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  • Gaithersburg, Maryland
  • 22:33 (UTC -04:00)

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Achievement: Pair Extraordinairex2Achievement: Pull Sharkx2Achievement: Quickdraw

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toddcreasy/README.md

Todd Creasy

Bioinformatics and AI engineer, Gaithersburg, MD.

25 years in genomics and translational oncology, including 10+ years at AstraZeneca. I build NGS and transcriptomics pipelines, cloud-scale workflow infrastructure, and agentic AI systems for clinical and biomedical data.

Tools I use

  • AI: Anthropic API, Pydantic-AI, MCP, PyTorch, HuggingFace
  • Pipelines: Nextflow, nf-core (rnaseq, methylseq), nf-test, Seqera Platform, Bismark, scanpy, R/Bioconductor (DESeq2, mixOmics)
  • Cloud and infra: AWS Batch, AWS CDK, Docker, Apptainer, Slurm, GitHub Actions
  • Backend and data: Python, uv, FastAPI, PostgreSQL, Parquet

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