Skip to content

Pull requests: samtools/htslib

New pull request New
32 Open 1,267 Closed
32 Open 1,267 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Use bash and pipefail for tests using simple_test_driver.sh
#2083 opened Aug 27, 2026 by daviesrob Member Loading…
Fix infinite loop in zlib_mem_inflate() when uncomp_size=1 (CWE-835)
#2081 opened Aug 26, 2026 by lrycro Loading…
@jkbonfield
5
Add more memory allocation checks in header API functions
#2078 opened Aug 24, 2026 by daviesrob Member Loading…
4
Add S3 integration tests
#2067 opened Aug 13, 2026 by PeterDowdy Contributor Loading…
@whitwham
2
OSS-Fuzz: Add new fuzzer targets fai processing
#2039 opened Jun 19, 2026 by arthurscchan Loading…
@daviesrob
1
change to have hts wide depth filtering
#2016 opened May 21, 2026 by vasudeva8 Contributor Loading…
@jkbonfield
21
Long chr region
#2009 opened May 14, 2026 by jkbonfield Contributor • Draft
fix(performance): Use bounded HTTP Range requests for indexed BAM queries
#1998 opened Apr 14, 2026 by TechIsCool Loading…
@daviesrob
3
Add API functions to parse and format SEQ and QUAL fields
#1974 opened Nov 26, 2025 by jmarshall Member Loading…
@daviesrob
4
hts wide maxdepth limit check
#1965 opened Oct 30, 2025 by vasudeva8 Contributor • Draft
1
@whitwham
ISA-L compression support evaluation.
#1908 opened Apr 29, 2025 by rhpvorderman Contributor • Draft
2
Add VCF/BCF support for POS=0 coordinate
#1573 opened Mar 1, 2023 by pd3 Member Loading…
1
5
Proposal to add hts_log callback function and hts_log_set_logger()
#1414 opened Mar 23, 2022 by jmarshall Member • Draft
@daviesrob
2
Progress and Cancelation for Indexing
#1379 opened Jan 12, 2022 by BickfordA Contributor Loading…
11
Iteration over SAM header lines and header expression filtering
#1351 opened Nov 2, 2021 by jmarshall Member • Draft
@whitwham
2
Improve cross-compilation support [once autoconf 2.70 is widespread]
#1199 opened Jan 4, 2021 by jmarshall Member • Draft
2
improve compatibility for c++
#1191 opened Dec 11, 2020 by s-wakaba Loading…
6
Update to the depth filtering for mpileup.
#1084 opened Jun 15, 2020 by jkbonfield Contributor Loading…
5
Speed up of VCF parsing / writing with FORMAT fields.
#1081 opened May 28, 2020 by jkbonfield Contributor Loading…
4
Add method sam_open_write
#1055 opened Apr 6, 2020 by valeriuo Contributor Loading…
14
Fixes involving CRAM and header API for long references.
#976 opened Nov 15, 2019 by jkbonfield Contributor Loading…
2
sam_format1 : replace if/then with switch/case
#704 opened May 24, 2018 by lindenb Loading…
1
Add mmap hfile backend
#690 opened Apr 23, 2018 by ThomasHickman Contributor Loading…
12
Provide more informative error message when encountering unexpected n…
#689 opened Apr 22, 2018 by cinquin Contributor Loading…
2
Add hts_open_cb() interface which allows callback function used as data source
#647 opened Jan 10, 2018 by 38 Loading…
12
ProTip! Follow long discussions with comments:>50.