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Nextstrain

Real-time tracking of pathogen evolution

237 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 279 135
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 312 171

Repositories

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Showing 10 of 104 repositories

infra Public
Nextstrain shared infrastructure

nextstrain/infra's past year of commit activity

Makefile 0 0 2 1 Updated Sep 15, 2026
forecasts-flu Public
Seasonal influenza variant growth rates and frequency forecasts

nextstrain/forecasts-flu's past year of commit activity

Python 1 MIT 0 11 4 Updated Sep 14, 2026
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur's past year of commit activity

Python 279 AGPL-3.0 135 230 (1 issue needs help) 37 Updated Sep 14, 2026
mpox Public
Nextstrain build for mpox virus

nextstrain/mpox's past year of commit activity

Python 50 MIT 22 19 8 Updated Sep 14, 2026
nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org's past year of commit activity

JavaScript 96 AGPL-3.0 56 70 13 Updated Sep 14, 2026
auspice.us Public

nextstrain/auspice.us's past year of commit activity

JavaScript 13 8 4 0 Updated Sep 13, 2026
measles Public
Nextstrain build for measles virus

nextstrain/measles's past year of commit activity

Python 4 9 7 2 Updated Sep 11, 2026
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu's past year of commit activity

Python 64 34 27 9 Updated Sep 10, 2026
status Public
Nextstrain status pages

nextstrain/status's past year of commit activity

JavaScript 1 MIT 1 4 0 Updated Sep 10, 2026
real-time-pathogens-ms Public
Nextstrain automates real-time phylogenetic analysis of open data for endemic and emerging pathogens

nextstrain/real-time-pathogens-ms's past year of commit activity

TeX 0 0 0 0 Updated Sep 10, 2026

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