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National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 52 15

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 3 5

Repositories

Showing 10 of 85 repositories
  • submission-schema Public

    The NMDC submission schema

    microbiomedata/submission-schema's past year of commit activity
    Python 1 MIT 3 35 2 Updated Oct 14, 2026
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema's past year of commit activity
    Python 52 CC0-1.0 15 439 (5 issues need help) 15 Updated Oct 14, 2026
  • external-metadata-awareness Public

    MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

    microbiomedata/external-metadata-awareness's past year of commit activity
    Jupyter Notebook 2 1 99 3 Updated Oct 14, 2026
  • nmdc-ai-eval Public

    Framework and data for performing evaluations for AI-powered NMDC tools.

    microbiomedata/nmdc-ai-eval's past year of commit activity
    Python 2 0 45 4 Updated Oct 14, 2026
  • nmdc-metadata-suggestor-ai-tool Public

    A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

    microbiomedata/nmdc-metadata-suggestor-ai-tool's past year of commit activity
    Python 2 2 32 7 Updated Oct 13, 2026
  • nmdc-mass-spec-automation Public

    NMDC data processing system for metabolomics, lipidomics, and NOM data. Workflow and metadata manager.

    microbiomedata/nmdc-mass-spec-automation's past year of commit activity
    Python 1 1 2 2 Updated Oct 13, 2026
  • docs Public

    User-facing, web-based documentation about the NMDC

    microbiomedata/docs's past year of commit activity
    Dockerfile 3 5 33 1 Updated Oct 13, 2026
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime's past year of commit activity
    Python 7 8 147 (3 issues need help) 18 Updated Oct 13, 2026
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server's past year of commit activity
    Python 12 1 118 12 Updated Oct 12, 2026
  • SRA_submit Public

    ncbi export

    microbiomedata/SRA_submit's past year of commit activity
    Python 1 1 0 0 Updated Oct 9, 2026
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