Issues

• HERRO’s correction results on ONT data

  lbcb-sci/herro#87 · Filter by author majssssa opened on Jun 5, 2026
  5

• question about inference, when Killed in Parsing reads

  lbcb-sci/herro#85 · Filter by author Henry-Ding opened on Jun 2, 2026
  2

• How to handle HERRO inference OOM errors on limited-RAM GPU nodes

  lbcb-sci/herro#84 · Filter by author wlhCNU opened on May 21, 2026

• Unsupported CIGAR operation when computing inclusive scan

  lbcb-sci/herro#83 · Filter by author GuillaumeHolley opened on Sep 12, 2025

• Dataset generation issues

  lbcb-sci/herro#82 · Filter by author mjfbuse opened on Apr 21, 2025

• bin/sh: 20: cd: can't cd to herro ABORT: Aborting with RETVAL=255

  lbcb-sci/herro#80 · Filter by author Axzevd opened on Feb 13, 2025

• RUST_BACKTRACE=1 Error Message

  lbcb-sci/herro#79 · Filter by author PhDWannaB1030 opened on Jan 18, 2025
  2

• Update pytorch / cuda version?

  lbcb-sci/herro#78 · Filter by author ChristianKniep opened on Jan 9, 2025

• "thread '<unnamed>' panicked at /herro/herro/src/mm2.rs:37:10" running demo sequence

  lbcb-sci/herro#73 · Filter by author runujhkj opened on Dec 9, 2024

• Quality control

  lbcb-sci/herro#72 · Filter by author wendy1305 opened on Dec 5, 2024
  1

• herro inference error

  lbcb-sci/herro#71 · Filter by author 1Wencai opened on Dec 2, 2024
  2

• strange length binning?

  lbcb-sci/herro#67 · Filter by author kevfengler227 opened on Nov 7, 2024
  5

  

• conda environment installation issues

  lbcb-sci/herro#65 · Filter by author sjfleck opened on Oct 23, 2024
  2

  

• minimap2 overlap parameters

  lbcb-sci/herro#64 · Filter by author rcgsmith opened on Oct 22, 2024

• Provide an offical docker image

  lbcb-sci/herro#62 · Filter by author zhengxinchang opened on Oct 7, 2024
  2

• Training code

  lbcb-sci/herro#61 · Filter by author david4096 opened on Sep 25, 2024

• qbuf problem

  lbcb-sci/herro#59 · Filter by author mjfbuse opened on Sep 23, 2024

• error correction fails when ran with batched alignments

  lbcb-sci/herro#55 · Filter by author nponts opened on Sep 7, 2024
  2

• "Processed 0 reads" but exit code still 0

  lbcb-sci/herro#52 · Filter by author colindaven opened on Aug 12, 2024
  8

• Cannot load model

  lbcb-sci/herro#51 · Filter by author chuanxinyu opened on Aug 9, 2024
  2

• Growing differences between "dorado correct" and HERRO

  lbcb-sci/herro#49 · Filter by author shelkmike opened on Aug 6, 2024
  2

• RUST_BACKTRACE=1

  lbcb-sci/herro#47 · Filter by author fangdongming opened on Jul 24, 2024
  4

• Download of Singularity image (current link is dead)

  lbcb-sci/herro#46 · Filter by author estolle opened on Jul 23, 2024
  3

• RUST_BACKTRACE=1

  lbcb-sci/herro#45 · Filter by author PhDWannaB1030 opened on Jul 21, 2024
  1

• how to install herro without root

  lbcb-sci/herro#43 · Filter by author YouxinZhao opened on Jul 3, 2024
  1