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  1. MPRAsnakeflow MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    Python 16 12

Repositories

Showing 10 of 32 repositories
  • CADD_threshold_app Public
    kircherlab/CADD_threshold_app's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 23, 2026
  • MPRAlib Public

    Library to analyse, filter and plot MPRA count data.

    kircherlab/MPRAlib's past year of commit activity
    Python 2 MIT 1 2 0 Updated Sep 23, 2026
  • MPRAsnakeflow Public

    With this snakemake pipeline you can process your MPRA sequencing data (assignment and count). It is the standard MPRA pipeline of the IGVF consortium and a further development of MPRAflow.

    kircherlab/MPRAsnakeflow's past year of commit activity
    Python 16 MIT 12 8 2 Updated Sep 23, 2026
  • kircherlab.github.io Public

    Kircher Lab website

    kircherlab/kircherlab.github.io's past year of commit activity
    HTML 1 0 0 0 Updated Sep 22, 2026
  • CADD-SV Public

    CADD-SV – a framework to score the effect of structural variants

    kircherlab/CADD-SV's past year of commit activity
    Python 23 MIT 7 0 0 Updated Sep 17, 2026
  • IGVF_MPRA_quantification Public

    With this workflow you can use the output of MPRAsnakeflow (reporter experiment barcode file) together with the MPRA library sequence design file to quantify the MPRA reporter expression. It can quantify variants as well as elements. using BCalm.

    kircherlab/IGVF_MPRA_quantification's past year of commit activity
    R 0 MIT 0 0 2 Updated Sep 7, 2026
  • 80K-Analysis Public
    kircherlab/80K-Analysis's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 31, 2026
  • CADD_threshold_analysis Public
    kircherlab/CADD_threshold_analysis's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 26, 2026
  • MPRA_SaturationMutagenesis Public

    R Shiny website of the Saturation Mutagenesis manuscript

    kircherlab/MPRA_SaturationMutagenesis's past year of commit activity
    R 4 GPL-3.0 2 1 2 Updated Jul 27, 2026
  • mpra_capture_flow Public
    kircherlab/mpra_capture_flow's past year of commit activity
    Python 0 MIT 0 0 1 Updated Jun 29, 2026
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