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ITMAT Applications

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  1. rum rum Public

    RNA-Seq Unified Mapper

    Roff 27 4

  2. Normalization Normalization Public

    RNA-Seq normalization and quantification pipeline

    Roff 12 6

  3. BEERS2 BEERS2 Public

    Python 11 2

  4. bio-cookbooks bio-cookbooks Public

    A Chef cookbooks repository for bioinformatics tools

    Ruby 8

  5. CAMPAREE CAMPAREE Public

    Configurable And Modular Program Allowing RNA Expression Emulation

    Python 8 2

  6. beers_simulator beers_simulator Public

    Perl 5 2

Repositories

Showing 10 of 41 repositories
  • ITMAT_office_houRs Public
    itmat/ITMAT_office_houRs's past year of commit activity
    1 0 0 0 Updated Apr 16, 2026
  • CAMPAREE Public

    Configurable And Modular Program Allowing RNA Expression Emulation

    itmat/CAMPAREE's past year of commit activity
    Python 8 GPL-3.0 2 5 0 Updated Mar 3, 2026
  • dependent_sim_paper Public
    itmat/dependent_sim_paper's past year of commit activity
    R 0 MIT 0 0 0 Updated Oct 6, 2025
  • BEERS2 Public
    itmat/BEERS2's past year of commit activity
    Python 11 GPL-3.0 2 6 3 Updated Mar 31, 2025
  • BEERS_UTILS Public

    Utilities for the BEERS 2 suite of tools.

    itmat/BEERS_UTILS's past year of commit activity
    Python 0 GPL-3.0 0 0 1 Updated Mar 31, 2025
  • Normalization Public

    RNA-Seq normalization and quantification pipeline

    itmat/Normalization's past year of commit activity
    Roff 12 GPL-3.0 6 6 0 Updated Nov 25, 2024
  • OmicsBenchmarkReport Public

    Report template for omics methods benchmarking

    itmat/OmicsBenchmarkReport's past year of commit activity
    1 CC0-1.0 0 0 0 Updated Oct 5, 2023
  • Barrel Public
    itmat/Barrel's past year of commit activity
    Python 0 0 0 0 Updated Aug 29, 2023
  • nitecap Public

    Nitecap is an exploratory circadian data analysis tool aimed at high-throughput omics data. It provides a web-interface to examine your dataset with highly-responsive visualizations, allowing the easy viewing of hundreds or thousands of genes or other features. Nitecap computes some standard rhythmicity tests for you, including JTK, ARSER, Lomb…

    itmat/nitecap's past year of commit activity
    HTML 3 GPL-3.0 1 0 4 Updated Feb 16, 2023
  • rum Public

    RNA-Seq Unified Mapper

    itmat/rum's past year of commit activity
    Roff 27 MIT 4 49 1 Updated Sep 9, 2022
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