Skip to content
@greninger-lab

greninger-lab

Popular repositories Loading

  1. revica revica Public

    Forked from asereewit/revica

    A reference-based viral consensus genome assembly pipeline

    Nextflow 8 3

  2. covid_swift_pipeline covid_swift_pipeline Public

    Forked from michellejlin/covid_swift_pipeline

    Nextflow 4 4

  3. vadr-vscan-aglab vadr-vscan-aglab Public

    Use VADR v-scan to annotate HCoV, HMPV, HPIV, MeV, MuV or RuV sequences.

    Shell 4

  4. lava lava Public archive

    Forked from michellejlin/lava

    LAVA: Longitudinal Analysis of Viral Alleles

    Python 3 2

  5. pileup-hi pileup-hi Public

    Forked from epiliper/pileup-hi

    A high-throughput, extensible alignment pileup engine for the SAM and BAM formats

    Rust 3

  6. Tpallidum_WGS_Pipeline Tpallidum_WGS_Pipeline Public

    Nextflow 2

Repositories

Showing 10 of 81 repositories
  • vadr-models-ev Public

    Human enterovirus (EV) VADR model libraries

    greninger-lab/vadr-models-ev's past year of commit activity
    JavaScript 1 0 0 0 Updated Sep 2, 2026
  • picorna-strm Public
    greninger-lab/picorna-strm's past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 31, 2026
  • tpallidum-genotype-summary Public
    greninger-lab/tpallidum-genotype-summary's past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 25, 2026
  • RAVA_Pipeline Public

    RAVA (Reference-based Analysis of Viral Alleles) is a Nextflow-based pipeline for non-longitudinal viral NGS data that generates interactive browser visualizations and aggregate mutation tables.

    greninger-lab/RAVA_Pipeline's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Aug 18, 2026
  • pileup-hi Public Forked from epiliper/pileup-hi

    A high-throughput, extensible alignment pileup engine for the SAM and BAM formats

    greninger-lab/pileup-hi's past year of commit activity
    Rust 3 GPL-3.0 1 0 0 Updated Aug 14, 2026
  • pileup-hi_paper Public
    greninger-lab/pileup-hi_paper's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 14, 2026
  • rad_assembler Public

    Nextflow pipeline for Reference Assisted De novo assembling whole genome shotgun sequenced viruses.

    greninger-lab/rad_assembler's past year of commit activity
    Nextflow 0 MIT 1 3 0 Updated Jul 16, 2026
  • tpallidum-variant-calling Public
    greninger-lab/tpallidum-variant-calling's past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Jun 3, 2026
  • vadr-models-hav Public

    Hepatitis A virus (HAV) VADR model library

    greninger-lab/vadr-models-hav's past year of commit activity
    JavaScript 2 0 0 0 Updated May 26, 2026
  • revica-strm Public Forked from epiliper/revica-strm

    An accelerated pipeline for reference-based assembly of viral genomes from capture and metagenomic short read sequencing data

    greninger-lab/revica-strm's past year of commit activity
    Nextflow 1 2 1 0 Updated Apr 22, 2026
View all repositories

Most used topics

Loading…