All pull requests

Pull requests

• Also update the docs updater to python 3.10 and newer cwltool.

  #1087·tmooney opened Jun 21, 2023Member·

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• Updates to immuno workflow for upcoming 4.0.0 release

  #1085·susannasiebert opened Mar 10, 2023Contributor·

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• Port changes from tmooney/analysis-wdls#1.

  #1084·tmooney opened Feb 22, 2023Member·

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• Use sambamba for duplicate marking.

  #1082·tmooney opened Dec 13, 2022Member·

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• FDA table generation: the output table_file_name is required

  #1079·tmooney opened Oct 18, 2022Member·

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• germline joint detect variants workflow

  #1043·apaul7 opened Jul 15, 2021Member·

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  16

• Adding LLR and MAPQ column to variants table

  #1019·saimukund20 opened Mar 23, 2021Collaborator·

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• Updating bisulfite pipeline to accept bams and fastqs

  #996·chrisamiller opened Jan 27, 2021Collaborator·

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• somatic_exome cram version

  #973·johnegarza opened Dec 8, 2020Member·

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• more docs for somatic exome

  #872·zlskidmore opened Feb 4, 2020Collaborator·

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• Updated workflow for basic UMI-aware alignment and qc

  #840·jasonwalker80 opened Dec 9, 2019Member·

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• Non-human WGS Pipeline with Basic QC and Variant Calls (SNVs/Indels)

  #714·jasonwalker80 opened Jun 18, 2019Member·

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• Basic Exome Alignment +QC Workflow (non-human)

  #713·jasonwalker80 opened Jun 18, 2019Member·

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• Update interval input

  #618·jasonwalker80 opened Apr 3, 2019Member·

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• Cram support

  #609·zlskidmore opened Mar 19, 2019Collaborator·

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