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ga4gh
vrs-python
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Enforce sequence coordinate bounds
- #663
#663
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theferrit32
merged 16 commits into
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ga4gh/vrs-python:main
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kf/location-bounds
ga4gh/vrs-python:kf/location-bounds
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Oct 27, 2026
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Enforce sequence coordinate bounds
#663
theferrit32
merged 16 commits into
main
ga4gh/vrs-python:main
from
kf/location-bounds
ga4gh/vrs-python:kf/location-bounds
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Commits
Commits on Sep 23, 2026
fix(translator): look up VRS model class by type in _from_vrs
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fix(translator): reject out-of-bounds sequence locations
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fix(normalize): reject out-of-bounds allele locations before fetching
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test: cover out-of-bounds location validation
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Commits on Sep 24, 2026
cleanup: trim location bounds validation
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cleanup: inline single-use bounds helpers
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cleanup: validate bounds against the refget accession
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cleanup: address review of location bounds validation
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Commits on Oct 1, 2026
cleanup: name both input and refget ids in bounds errors
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cleanup: use dict test cases to match existing parametrize style
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Commits on Oct 6, 2026
revert: drop _from_vrs fix from location bounds branch
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Commits on Oct 20, 2026
cleanup: check location bounds inside validate_ref_seq
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fix: reject locations and fetches whose start is after their end
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fix: check HGVS identity and dup locations before fetching the reference
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Commits on Oct 26, 2026
Merge branch 'main' into kf/location-bounds
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cleanup: trim start-after-end docstrings, comments and error message
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