Style: pre-comit autofixes white spaces and character limit

.pre-commit-config.yaml

@@ -11,7 +11,7 @@ ci:
   submodules: false
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v6.0.0
     hooks:
       - id: check-yaml
       - id: end-of-file-fixer
@@ -21,31 +21,31 @@ repos:
       - id: check-toml
       - id: check-added-large-files
   - repo: https://github.com/psf/black
-    rev: 24.4.2
+    rev: 26.3.1
     hooks:
       - id: black
   - repo: https://github.com/pycqa/flake8
-    rev: 7.0.0
+    rev: 7.3.0
     hooks:
       - id: flake8
   - repo: https://github.com/pycqa/isort
-    rev: 5.13.2
+    rev: 9.0.0a3
     hooks:
       - id: isort
         args: ["--profile", "black"]
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
+    rev: 0.9.1
     hooks:
       - id: nbstripout
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v6.0.0
     hooks:
       - id: no-commit-to-branch
         name: Prevent Commit to Main Branch
         args: ["--branch", "main"]
         stages: [pre-commit]
   - repo: https://github.com/codespell-project/codespell
-    rev: v2.3.0
+    rev: v2.4.2
     hooks:
       - id: codespell
         additional_dependencies:
@@ -58,8 +58,8 @@ repos:
         additional_dependencies:
           - "prettier@^3.2.4"
   # docformatter - PEP 257 compliant docstring formatter
-  - repo: https://github.com/s-weigand/docformatter
-    rev: 5757c5190d95e5449f102ace83df92e7d3b06c6c
+  - repo: https://github.com/PyCQA/docformatter
+    rev: v1.7.8
     hooks:
       - id: docformatter
         additional_dependencies: [tomli]

news/precomit-autofix.rst

@@ -0,0 +1,23 @@
+**Added:**
+
+* No News Added: Style change made with pre-commit auto-fixers. No functional changes were made to the code.
+
+**Changed:**
+
+* <news item>
+
+**Deprecated:**
+
+* <news item>
+
+**Removed:**
+
+* <news item>
+
+**Fixed:**
+
+* <news item>
+
+**Security:**
+
+* <news item>

src/diffpy/labpdfproc/tools.py

@@ -113,8 +113,10 @@ def _expand_user_input(args):
 
 
 def set_input_lists(args):
-    """Set input directory and files. It takes cli inputs, checks if
-    they are files or directories and creates a list of files to be
+    """Set input directory and files.
+
+    It takes cli inputs, checks if they are files or directories
+    and creates a list of files to be
     processed which is stored in the args Namespace.
 
     Parameters
@@ -132,7 +134,6 @@ def set_input_lists(args):
     args : argparse.Namespace
         The updated arguments with the modified input list.
     """
-
     input_paths = []
     args = _expand_user_input(args)
     for input_name in args.input:
@@ -224,7 +225,6 @@ def load_wavelength_from_config_file(args):
     args : argparse.Namespace
         The updated arguments with the updated wavelength and anode type.
     """
-
     if args.wavelength is not None:
         return normalize_wavelength(args)
 
@@ -453,7 +453,6 @@ def load_user_metadata(args):
         The updated argparse Namespace
         with user metadata inserted as key-value pairs.
     """
-
     reserved_keys = set(vars(args).keys())
 
     if args.user_metadata:
@@ -479,10 +478,12 @@ def load_user_metadata(args):
 
 
 def load_user_info(args):
-    """Load user info into args. If none is provided, call
-    check_and_build_global_config function from diffpy.utils to prompt
-    the user for inputs. Otherwise, call get_user_info with the provided
-    arguments.
+    """Load user info into args.
+
+    If none is provided, call check_and_build_global_config
+    function from diffpy.utils to prompt
+    the user for inputs. Otherwise, call get_user_info
+    with the provided arguments.
 
     Parameters
     ----------
@@ -550,9 +551,11 @@ def _check_saved_file_exists(args):
 
 
 def preprocessing_args(args):
-    """Perform preprocessing on the provided args. The process includes
-    loading package and user information, setting input, output,
-    wavelength, anode type, xtype, mu*D, and loading user metadata.
+    """Perform preprocessing on the provided args.
+
+    The process includes loading package and user information,
+    setting input, output, wavelength, anode type, xtype,
+    mu*D, and loading user metadata.
 
     Parameters
     ----------