Issues

• Funnel Apptainer executor

  Feature Request
  calypr/funnel#1483 · Filter by author matthewpeterkort opened on Oct 29, 2026

• Proposal: GA4GH htsget:// and sda:// task inputs (with Crypt4GH decryption)

  calypr/funnel#1455 · Filter by author josefAugustin opened on Oct 8, 2026

• Releases still use permalinks in the ohsu-comp-bio namespace which no longer contains those resources.

  blockerbug
  Bug

  calypr/funnel#1391 · Filter by author nimpo opened on Apr 16, 2026
  1

  

• GCP Batch: Verify Compliance Tests

  bugGCP Batch
  Bug

  calypr/funnel#1273 · Filter by author lbeckman314 opened on Dec 9, 2025 · GCP Batch Production Support

• GCP Batch: Possible to remove Bucket Prefix in Inputs + Outputs?

  bugGCP Batch
  Bug

  calypr/funnel#1272 · Filter by author lbeckman314 opened on Dec 9, 2025 · GCP Batch Production Support
  3

  

• GCP Batch: Task Logs: appear in GCP Batch Console, but not retrieved by Funnel yet

  bugGCP Batch
  Bug

  calypr/funnel#1271 · Filter by author lbeckman314 opened on Dec 9, 2025 · GCP Batch Production Support
  

• GCP Batch: Task State Syncing: need to update reconciler to fetch Task State

  bugGCP Batch
  Bug

  calypr/funnel#1270 · Filter by author lbeckman314 opened on Dec 9, 2025 · GCP Batch Production Support
  

• Explore support for alternative $GOOS/$GOARCH

  enhancementexperiment
  Feature

  calypr/funnel#1258 · Filter by author lbeckman314 opened on Nov 25, 2025
  

• Design Doc: Investigate GCE Batch + TES

  enhancementexperiment
  Feature

  calypr/funnel#1188 · Filter by author lbeckman314 opened on Apr 11, 2025 · 0.11.4
  3

  

• Plugin fails to exit gracefully

  bug
  Bug

  calypr/funnel#1187 · Filter by author lbeckman314 opened on Apr 11, 2025
  

• Test support for S3 buckets with KMS encryption

  blocker
  Bug

  calypr/funnel#1182 · Filter by author lbeckman314 opened on Apr 2, 2025 · 0.11.4
  

• Add API Spec for Funnel Plugin

  docs
  Task

  calypr/funnel#1174 · Filter by author lbeckman314 opened on Mar 13, 2025 · 0.11.4
  

• Feature Request: Add visualizer for tracking workflows and file inputs/outputs

  enhancementexperimentFeature Request
  Feature

  calypr/funnel#1034 · Filter by author lbeckman314 opened on Aug 14, 2024
  

• Funnel does not detect terminated instances on AWS

  calypr/funnel#973 · Filter by author kmavrommatis opened on May 24, 2024

• Expose backend parameter to run container with additional permissions

  enhancementFeature Request
  calypr/funnel#962 · Filter by author stxue1 opened on May 9, 2024
  1

  

• Add option to connect to Gen3 systems

  calypr/funnel#863 · Filter by author kellrott opened on Feb 27, 2024

• Allow Funnel to run tasks against custom domain socket

  enhancement
  calypr/funnel#809 · Filter by author lbeckman314 opened on Jan 23, 2024
  1

  

• Add Snakemake workflow tests to Funnel

  enhancementgood first issue
  calypr/funnel#762 · Filter by author lbeckman314 opened on Dec 14, 2023

• Task ID returned before database doc is created

  calypr/funnel#722 · Filter by author uniqueg opened on Oct 3, 2023
  1

• Configuration for replacing path prefixes

  feature
  calypr/funnel#708 · Filter by author kellrott opened on May 31, 2023

• Using instances with GPUs

  calypr/funnel#664 · Filter by author kmavrommatis opened on Mar 21, 2022
  4

• Compute: HashiCorp Nomad

  Feature Request
  calypr/funnel#628 · Filter by author matthdsm opened on Mar 3, 2020
  9

• Storage: add DRS support

  calypr/funnel#627 · Filter by author adamstruck opened on Feb 24, 2020

• Provide aws command to create CloudFormation template of resources instead of actual resources

  calypr/funnel#624 · Filter by author golharam opened on Dec 13, 2019
  4

• Retry failed task

  calypr/funnel#616 · Filter by author kmavrommatis opened on Jun 25, 2019
  3