Issues

• How to set numsites for consensus tree？

  blackrim/treePL#73 · Filter by author NERV-Asuka opened on Nov 24, 2025
  3

• I can't even check the version

  blackrim/treePL#72 · Filter by author Pawel9906 opened on Jun 27, 2025
  2

• "tree missing concluding semicolon" error for what looks like a good tree

  blackrim/treePL#71 · Filter by author pbbreslin1 opened on May 21, 2025
  3

• No access to sudo on a cluster

  blackrim/treePL#70 · Filter by author ThibauldMichel opened on Apr 4, 2025
  2

• Seeking Guidance on Using treePL for Divergence Time Analysis

  blackrim/treePL#69 · Filter by author hlstrived opened on Apr 3, 2025
  1

• treePL: error while loading shared libraries: libadolc.so.2: cannot open shared object file: No such file or directory

  blackrim/treePL#68 · Filter by author bioinfowheat opened on Jan 29, 2025

• Large variation among different replicates but with same parameters

  blackrim/treePL#66 · Filter by author XuWeiEvo opened on Mar 27, 2024

• Failed setting feasible start rates/dates after 10 attempts. Aborting.

  blackrim/treePL#63 · Filter by author Puguang-Zhao opened on Feb 28, 2024
  8

• How to call treePL ??

  blackrim/treePL#61 · Filter by author Galaxy-228 opened on Jun 27, 2022
  11

• R script to check consistency of calibrations for 100 large trees (~3,000 taxa)?

  blackrim/treePL#59 · Filter by author Belinda333 opened on Nov 24, 2021
  22

• Installation problem

  blackrim/treePL#57 · Filter by author francicco opened on Aug 19, 2021

• CV hanging

  blackrim/treePL#51 · Filter by author tle003 opened on Aug 9, 2020
  2

• What exactly does "linear search failed" mean in terms of tree quality?

  blackrim/treePL#49 · Filter by author jamiethompson77 opened on Jun 29, 2020
  4

• error in installation

  blackrim/treePL#36 · Filter by author zhaonanhd opened on Jul 5, 2018

• calculating without gradient (might want to try a different optad=VALUE)

  blackrim/treePL#34 · Filter by author stubbsrl opened on Jan 9, 2018
  1

• Estimating substitution rates

  blackrim/treePL#33 · Filter by author burbrink opened on Jan 9, 2018
  2

• Prime: "Linear search failed" concerns

  blackrim/treePL#32 · Filter by author coyotree opened on Nov 13, 2017