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@blab

Bedford Lab

Viruses, evolution and immunity at Fred Hutch.

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  1. nextflu nextflu Public

    Real-time tracking of influenza evolution

    JavaScript 91 18

  2. blotter blotter Public

    bedford lab research

    HTML 68 93

  3. global-migration global-migration Public

    Analysis of global migration patterns of seasonal influenza viruses

    Mathematica 23

  4. baltic baltic Public

    Forked from evogytis/baltic

    baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longer receive updates, so any further development to baltic is g…

    Jupyter Notebook 12 6

  5. siv-cst siv-cst Public

    Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission

    Jupyter Notebook 6 2

  6. zika-seq zika-seq Public

    Pipelines to do MinION sequencing of Zika virus

    Python 15 3

Repositories

Showing 10 of 118 repositories
  • ncov-usa-mig Public

    SARS-CoV-2 geographic and demographic structure in the USA

    blab/ncov-usa-mig's past year of commit activity
    HTML 1 0 0 0 Updated Sep 15, 2026
  • mutational-embedding-vectors Public
    blab/mutational-embedding-vectors's past year of commit activity
    HTML 0 0 1 0 Updated Sep 13, 2026
  • blotter Public

    bedford lab research

    blab/blotter's past year of commit activity
    HTML 68 93 2 0 Updated Aug 31, 2026
  • pathogen-embed Public

    Create reduced dimension embeddings for pathogen sequences

    blab/pathogen-embed's past year of commit activity
    Python 1 MIT 0 3 0 Updated Aug 14, 2026
  • ncov-saltational Public

    Characterizing SARS-CoV-2 saltational evolution

    blab/ncov-saltational's past year of commit activity
    R 0 0 0 0 Updated Aug 7, 2026
  • adaptive-evolution Public

    An atlas of continuous adaptive evolution in endemic human viruses

    blab/adaptive-evolution's past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Aug 2, 2026
  • bacterial-args Public

    Recombination-aware bacterial phylgoeography using ARGs

    blab/bacterial-args's past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Jul 22, 2026
  • fitness-flux Public

    Fitness flux in SARS-CoV-2 and influenza H3N2

    blab/fitness-flux's past year of commit activity
    Wolfram Language 1 2 0 0 Updated Jul 16, 2026
  • rt-from-frequency-dynamics Public

    Inferring variant-specific reproduction numbers from case counts and sequencing data

    blab/rt-from-frequency-dynamics's past year of commit activity
    Wolfram Language 45 MIT 5 3 1 Updated Jul 6, 2026
  • blotter-deploy Public

    Script to build and deploy Bedford lab website

    blab/blotter-deploy's past year of commit activity
    Ruby 0 0 0 2 Updated Jun 30, 2026
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