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@biocore

biocore

Collaboratively developed bioinformatics software.

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  1. gneiss gneiss Public

    compositional data analysis toolbox

    Jupyter Notebook 63 27

Repositories

Showing 10 of 92 repositories
  • pysyndna Public

    Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

    biocore/pysyndna's past year of commit activity
    Python 0 0 0 0 Updated Sep 9, 2026
  • unifrac-binaries Public
    biocore/unifrac-binaries's past year of commit activity
    C++ 2 BSD-3-Clause 10 5 1 Updated Sep 6, 2026
  • q2-conduit Public

    Plugin that converts Conduit metaproteomics results into QIIME 2 artifacts for downstream analyses

    biocore/q2-conduit's past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Aug 27, 2026
  • kl-metapool Public

    Jupyter notebooks to assist with sample processing

    biocore/kl-metapool's past year of commit activity
    Python 9 MIT 20 58 (2 issues need help) 3 Updated Jul 24, 2026
  • tax2tree Public

    Automated taxonomy decoration onto a tree

    biocore/tax2tree's past year of commit activity
    Python 18 BSD-3-Clause 11 10 2 Updated Jul 16, 2026
  • gemelli Public

    Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

    biocore/gemelli's past year of commit activity
    Python 92 BSD-3-Clause 20 36 (1 issue needs help) 3 Updated Jul 13, 2026
  • BIRDMAn Public

    Bayesian Inferential Regression for Differential Microbiome Analysis

    biocore/BIRDMAn's past year of commit activity
    Python 25 BSD-3-Clause 6 19 1 Updated Jun 5, 2026
  • biom-format Public

    The Biological Observation Matrix (BIOM) Format Project

    biocore/biom-format's past year of commit activity
    Python 98 93 27 3 Updated Jun 1, 2026
  • q2-birdman Public Forked from ahdilmore/MARS_Birdman

    Outlines for running birdman

    biocore/q2-birdman's past year of commit activity
    Python 3 BSD-3-Clause 4 0 0 Updated May 18, 2026
  • microsetta-interface Public

    The Microsetta participant facing user interface

    biocore/microsetta-interface's past year of commit activity
    Jinja 1 BSD-3-Clause 17 44 4 Updated Apr 23, 2026
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