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1. ITSxRust ITSxRust Public

   ITS region extraction for long-read amplicon sequencing

   Rust 23

2. emits emits Public

   Expectation-Maximization abundance estimation for fungal ITS communities from long-read sequencing

   Rust 3

3. ssuplex ssuplex Public

   A fast, lightweight Rust preprocessor for rRNA-marker eDNA workflows

   Rust 2

4. its-classifier-audit its-classifier-audit Public

   Benchmark and flank ablation showing pretrained deep-learning ITS classifiers read the flanking regions rather than the ITS2 barcode.

   Python 2

5. its-novelty its-novelty Public

   A calibrated novelty flag for fungal ITS metabarcoding: conformal p-values replace an arbitrary identity cutoff with a chosen false-novelty rate.

   Python 2

6. open-world-its open-world-its Public

   Code, deviation log and manuscript for an open-world evaluation of a learned fungal ITS embedding against correctly configured VSEARCH alignment.

   Python 1