Sigray-Lab

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1. sigray_lab_website sigray_lab_website Public

   Website for Pontus Plavén Sigray's research group

   HTML

2. ERAP-periodontal-analysis ERAP-periodontal-analysis Public

   FDG-PET/MRI analysis pipeline for quantifying periodontal inflammation in the ERAP clinical trial

   Python

3. ERAP-ONH-analysis ERAP-ONH-analysis Public

   FDG-PET quantification pipeline for optic nerve head (ONH) analysis in the ERAP clinical trial

   Python

4. ERAP-BMD-muscle-analysis ERAP-BMD-muscle-analysis Public

   CT analysis pipeline for bone mineral density, muscle composition, and adipose tissue from the ERAP clinical trial

   Python

5. CSF-Panel-Discovery CSF-Panel-Discovery Public

   CSF autophagy/lysosome biomarker panel discovery pipeline - 13 datasets, ~9,500 proteins scored, translational mouse↔human

   Python

6. pet-idif-pipeline pet-idif-pipeline Public

   Dynamic PET imaging pipeline: DICOM to NIfTI, brain segmentation, TAC extraction, SUV/%ID, IDIF, and kinetic modeling (Patlak, Logan, 1/2TCM)

   Python