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@SIMEXP

SIMEXP

Laboratory for brain simulation and exploration

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  1. load_confounds load_confounds Public archive

    Load fMRIprep confounds in python

    Python 38 12

  2. niak niak Public

    GNU Octave library for connectivity analysis in large fMRI datasets

    MATLAB 30 22

  3. psom psom Public archive

    pipeline system for octave and matlab

    MATLAB 25 13

  4. fmriprep-denoise-benchmark fmriprep-denoise-benchmark Public

    Benchmark denoising strategies available from fmriprep.

    Python 17 9

  5. fmri_predict fmri_predict Public

    predicting fmri activaties from connectome

    Jupyter Notebook 16 12

  6. Data2Bids Data2Bids Public

    Reorganize fmri files to make them BIDS compliant.

    Python 13 2

Repositories

Showing 10 of 118 repositories
  • prevent-ad-benchmark Public

    Benchmarking neuroimaging foundation models (BrainLM, BrainHarmonix) on the PREVENT-AD dataset for downstream prediction of clinical and biological targets.

    SIMEXP/prevent-ad-benchmark's past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 14, 2026
  • simexp.github.io Public

    website of the SIMEXP lab

    SIMEXP/simexp.github.io's past year of commit activity
    Python 0 CC-BY-4.0 3 15 3 Updated Sep 5, 2026
  • Repo2Data Public

    Automatic data fetcher from the web

    SIMEXP/Repo2Data's past year of commit activity
    Python 9 MIT 7 10 1 Updated Mar 1, 2026
  • prevent-ad_dr8.1internal Public

    All fMRI data procressing used for Prevent-AD internal data release 8.0.

    SIMEXP/prevent-ad_dr8.1internal's past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 16, 2026
  • fmriprep-denoise-benchmark Public

    Benchmark denoising strategies available from fmriprep.

    SIMEXP/fmriprep-denoise-benchmark's past year of commit activity
    Python 17 MIT 9 0 0 Updated Dec 18, 2025
  • giga_preprocess2 Public

    Preprocess datasets using fMRIPrep

    SIMEXP/giga_preprocess2's past year of commit activity
    Shell 0 MIT 1 0 3 Updated Nov 7, 2025
  • giga_auto_qc Public

    Automatic quality control for fMRIPrep outputs aimed for large dataset

    SIMEXP/giga_auto_qc's past year of commit activity
    Python 3 MIT 2 8 1 Updated Aug 14, 2025
  • fmriprep-slurm Public

    Generate and run SLURM jobs on HPCs

    SIMEXP/fmriprep-slurm's past year of commit activity
    Python 13 MIT 3 2 0 Updated Aug 13, 2025
  • bids_conversion Public

    Scripts to convert data from CCNA and CIMAQ

    SIMEXP/bids_conversion's past year of commit activity
    Python 1 2 0 6 Updated Jul 31, 2025
  • wrangling-phenotype Public

    get ukbb data in shape for other projects

    SIMEXP/wrangling-phenotype's past year of commit activity
    Python 0 MIT 0 3 2 Updated Jul 22, 2025
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