Sk/queries - #78

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thompson318 wants to merge 64 commits into

devfrom

Commits on Feb 2, 2026

first query for flow sheets
skeating
committed
820840d

Commits on Feb 4, 2026

building up scripts
skeating
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fb3d6da

Commits on Feb 19, 2026

adding more files
skeating
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8476351

Commits on Aug 5, 2026

Merge branch 'dev' into sk/queries
skeating
committed
47240ff

Commits on Aug 9, 2026

Add and refine SQL scripts for EHR data extraction
skeating
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3961143

Commits on Aug 11, 2026

Started on functions to wrap snakemake around sql calls
thompson318
committed
cdec5ca

Commits on Aug 12, 2026

Started to implement caboodle look up code
thompson318
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9897259
Moved airway sql to sql directory
thompson318
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1f2cfbe
Setting up config and docker bits
thompson318
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bd72361

Commits on Aug 18, 2026

Caboodle setup goes into exporter.env
thompson318
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33e2c08
Format fix
thompson318
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9b291cb
Beginning of test for ehr integration
thompson318
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d4fde59
SQL formatting
thompson318
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d910831
Merge branch 'dev' into st/queries-to-snakemake
thompson318
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654db91
Test with ehr lookup
thompson318
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e8f29a7
use caboodle testing
thompson318
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86d5dea
Trying to test ehr and hash lookup with ftps
thompson318
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7fbcfc0

Commits on Aug 19, 2026

Commits on Aug 20, 2026

Commits on Aug 24, 2026

Commits on Aug 26, 2026

Commits on Aug 27, 2026

moved sql and implemented lab results
thompson318
committed
5d06ecc
Fixed column names in pseudon
thompson318
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c61164c
Flowsheets and labresults are star, not caboodle
thompson318
committed
a450faf

Commits on Aug 28, 2026

removed queries from proprietary database
skeating
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7b60b7d
removed queries from proprietary database
skeating
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83908c7

Commits on Aug 31, 2026

Commits on Sep 4, 2026

First go at janitor script. Only doing waveform processing files for
jeremyestein
committed
0763609

Commits on Sep 7, 2026

Merge remote-tracking branch 'origin/dev' into sk/queries
skeating
committed
2b4a0d9
star flow sheet query
skeating
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6057e70
finished star lab queries
skeating
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fbfc355
Add test for janitor, and add ability to clear up save HL7
jeremyestein
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93fe4e7
Docs tweak
jeremyestein
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0560106
Linting fix
jeremyestein
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392d579

Commits on Sep 8, 2026

Merge branch 'dev' into jeremy/janitoring
jeremyestein
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a0624cf
Rename namedtuple so pytest doesn't think it's a test class
jeremyestein
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b1394c7
Copy the janitoring config file
jeremyestein
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7376d32
Was overriding coverage directories specified in config file on the
jeremyestein
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b919c14
Merge remote-tracking branch 'origin/dev' into sk/queries
skeating
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5eaa746
removed un new scripts and moved read me to current script location
skeating
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87d9ae9
added note about getting scripts from the waveform-private-queries repository as part of deployment
skeating
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dfbb052
Merge remote-tracking branch 'origin/jeremy/janitoring' into sk/queries
skeating
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061dca7
Files that it looks like didn't get merged properly
skeating
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2be6191
I missed one
skeating
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89825d3