EHR queries - #103
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Introduces new queries for airway and sputum/secretions data, and refactors the flow sheet query to consolidate multiple values into a wider format. A new README documents the overall data extraction goal and the current set of scripts.
Transforms specific lab test results (e.g., CRP, WCC) from a long format into distinct columns using `MAX() FILTER`. This enables direct consumption of lab data in a wider format, simplifying downstream analysis. Additionally, the query is updated to use parameters for `hospital_visit_id` and to include date range filtering, improving its flexibility.
…Claude Sonnet 5.0
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Codecov Report❌ Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## dev #103 +/- ##
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+ Coverage 72.71% 73.05% +0.33%
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Files 15 16 +1
Lines 722 835 +113
Branches 67 75 +8
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+ Hits 525 610 +85
- Misses 175 197 +22
- Partials 22 28 +6 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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I have linearised the previous branches somewhat and removed all merges from dev (or janitoring), then done a big merge at the end. This takes us up to the equivalent of commit 061dca7 in the other branch.