chore(main): release 1.4.0

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🤖 I have created a release beep boop

1.4.0 (2026-09-02)

Features

• add checkM tool; closes #14 (3a0133a)
• add synteny anlaysis and viz using ntSynt (af66e43)
• added ntSynt and ntSynt-viz for synteny analysis + bug fix (6d9f5cb)

Bug Fixes

• add ref to synteny if defined in config; added ref_sequence for testing; closes #17 (49a451e)
• allow numeric strain and sample names (5f1e10c)
• container directive (6cd8742)
• dependency (90eb0ca)
• forgot 'extra' parameter in synteny detection. (3afccf5)
• formatting, early-fail on empty df, type enforcement for sample sheet (b8b013b)
• formatting, swap rsync with mv (2b142b7)
• minor change in config (fa92fb8)
• remove prefix param; closes #18 (75f9965)
• update bakta version. (3c3d61a)

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🤖 Created releases:

• v1.4.0

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