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test: raise coverage 48% -> 78% (+653 tests), fix 13 bugs found on the way - #159

Merged

Hendrik-code merged 25 commits into

mainfrom

coverage-85

Oct 21, 2026

Merged

test: raise coverage 48% -> 78% (+653 tests), fix 13 bugs found on the way#159
Hendrik-code merged 25 commits into
mainfrom
coverage-85

Commits on Oct 19, 2026
- fix: restore python 3.9 support (pairwise, zip strict) + stale coverage path
  
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  5065087
- fix: clamp _center_frontal to the volume; honour the network argument in TTA
  
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- test: cover bids_files via a synthetic on-disk BIDS dataset (39%->82%)
  
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- test: cover the logger (log_file 43%->~95%, log_constants to 100%)
  
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- test: cover spinestats angles/curvature/pelvic against analytic ground truth
  
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- test: cover torso_vat_sat and body_quadrants on synthetic volumes (4%->86%)
  
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  593a51b
- test: cover ivd/vertebra geometry and endplate ray casting (20%->82%)
  
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  5057fed
- test: cover core/dicom via a generated DICOM series round-trip (11%->61%)
  
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- test: cover dicom_renamer and xa_pairing via their dry-run plans (0%->80%/89%)
  
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- test: cover NII wrapper gaps (infect, truncate, stl, math mixin, Has_Grid)
  
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- test: cover ray casting and pixel-based point finding (37%->84%)
  
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- test: cover POI serialization formats and descriptor internals
  
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- test: cover stitching affine internals, sitk conversion and internal plumbing
  
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- test: cover the 2D snapshot helpers and templates (79%->86%)
  
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  da04efd
- test: close np_utils gaps; fix np_calc_boundary_mask for any threshold >= 2
  
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  82a51ba
- fix(rib): assign_ribs_to_vert_segmentation could never return; add tests (12%->63%)
  
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  8a0c73d
- test: cover rigid point registration (66%->88%)
  
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- test: cover the segmentation wrappers with a boundary-level mock
  
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  1d6e8b6
- test: cover the angles plotting wrappers (angles.py 62%->80%)
  
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  0ef1d82
- build: curate the coverage omit list; add a heavy-dep CI coverage job
  
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  dd7ff76
- style: fix the docstring section formatting ruff flagged (D410)
  
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  d6b9a93
- style: use a helper method instead of an assigned lambda
  
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  714ec62
- fix(ci): restrict the new DICOM dev deps to python >= 3.10
  
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  5e284e3
- fix(test): guard the mip_shot template test on torch
  
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Commits on Oct 20, 2026
- fix(ci): make the python 3.9 dependency set installable again
  
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  82c3600

Commits

Commits on Oct 19, 2026

Commits on Oct 20, 2026