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[WIP] Integration with DeepLabCut 3.0 - PyTorch Engine - #121

Merged

MMathisLab merged 89 commits into

mainfrom

dlclive3

Jan 19, 2026

Commits on Feb 24, 2025
- Remove TensorFlow references
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  b11743c
- Add comments on TF questions for changing dlc-live pipeline to Pytorch
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  c8f5839
- Vanilla pytorch inference done; Commenting out TensorFlow references in code
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  030c42c
- change testing directory for Anna and allow to run on CPU
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  d75339a
- Fix display, clean code, adapt frame processing, onnx inference
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  4de5829
- add screenshots
  Niels Poulsen
  committed
  40a9dd4
- Fix CPU inference crash + GPU (cuda) & CPU support for Pytorch and ONNX inference
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  2fc48f1
- Video analysis feature
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  125a072
- Improvements on benchmark_pytorch.py
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  9d2350e
- Implement TensorRT optimisation on ONNX models and FP16 precision inference
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  13b8fae
- Avs live feed
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  8b41df6
- Tutorial notebook in progress
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  d1e7df9
- bug fixing h5 saving for live video feed
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  2fb39fc
- add code to save numbers in csv and h5 as numbers, not tensor(number)
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  98b3a13
- add timestamp suffix to videos and csv/h5 files
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  e6a914a
- fix live inference and display, black and isort
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  29c8122
- cleaning out unused files
  
  AnnaStuckert
  authored and
  Niels Poulsen
  committed
  9508a79
- update docstrings, clean dlclive script
  
  dikraMasrour
  authored and
  Niels Poulsen
  committed
  d61f892
- Continued DeepLabCut-Live implementation for DeepLabCut 3.0
  Niels Poulsen
  committed
  f527d38
Commits on Feb 27, 2025
- working on README
  Niels Poulsen
  committed
  4c07e04
- improved docs
  Niels Poulsen
  committed
  82daf43
- improved docs for PyTorch code
  Niels Poulsen
  committed
  40005ae
- improved readme
  Niels Poulsen
  committed
  c6a1f69
- fix default top down dynamic cropping parameters
  Niels Poulsen
  committed
  d738a2c
Commits on May 5, 2025
- Update README.md
  
  MMathisLab
  and
  maximpavliv
  authored
  9524092
Commits on Jun 4, 2025
- Update .gitignore
  maximpavliv
  committed
  6db3901
- CI/CD update python version
  maximpavliv
  committed
  b7a527e
- CI/CD update actions versions
  maximpavliv
  committed
  8c2f1af
- CI/CD update trigger events
  maximpavliv
  committed
  15c1364
- CI/CD update MacOS version
  maximpavliv
  committed
  4444e3d
- dlclibrary set version to >=0.0.6
  maximpavliv
  committed
  0fefc95
- Poetry lock
  maximpavliv
  committed
  85ad7cb
- Poetry lock
  maximpavliv
  committed
  c479b11
- Pyproject.toml update tensorflow installation
  maximpavliv
  committed
  acd7e3e
- Poetry lock
  maximpavliv
  committed
  d70b7e8
- Install specific tensorflow-io-gcs-filesystem for windows
  maximpavliv
  committed
  114c55a
- Poetry lock
  maximpavliv
  committed
  6ed7faf
- Update deprecated section name
  maximpavliv
  committed
  594dee8
- Poetry lock
  maximpavliv
  committed
  b7e3ae2
- Merge branch 'maxim/fix_cicd' into dlclive3
  maximpavliv
  committed
  fb3424c
- Poetry lock
  maximpavliv
  committed
  751abea
- CI/CD install Tensorflow
  maximpavliv
  committed
  d27e8e1
- Fix missing DLCLive precision attribute
  maximpavliv
  committed
  55def2e
- benchmark_pytorch fix imports order resulting in crash
  maximpavliv
  committed
  87ac706
- Correct arg name
  maximpavliv
  committed
  d8f8eb0
Commits on Jun 5, 2025
- Benchmark pytorch: remove snapshot argument
  maximpavliv
  committed
  02c1a27
- Fix incorrect bbox unpacking
  maximpavliv
  committed
  fb1314e
- Benchmark pytorch: fix read config
  maximpavliv
  committed
  a00af6c
- Benchmark pytorch: rename method
  maximpavliv
  committed
  58a094a
- Benchmark pytorch: fix loop
  maximpavliv
  committed
  77c2f43
- Benchmark pytorch - update display params
  maximpavliv
  committed
  2b7c520
- Formatting
  maximpavliv
  committed
  45c85a5
- Benchmark pytorch: change save_dir default value
  maximpavliv
  committed
  5b10eb1
- Benchmark pytorch: extract setup_video_writer()
  maximpavliv
  committed
  7227c98
- Benchmark pytorch: extract draw_pose_and_write()
  maximpavliv
  committed
  ad62af4
Commits on Jun 11, 2025
- Add detector_transform and pose_transform
  maximpavliv
  committed
  014b96b
- Display: fix multi-animal frame display
  maximpavliv
  committed
  e03fb1d
- Benchmark pytorch: add single_animal arg
  maximpavliv
  committed
  045de53
- Benchmark pytorch: dont setup videowriter if not needed
  maximpavliv
  committed
  b493bef
Commits on Jun 13, 2025
- Benchmark pytorch: fix save_poses_to_files()
  maximpavliv
  committed
  dfe5817
- Benchmark pytorch: docstring
  maximpavliv
  committed
  c6ee1ba
- Benchmark pytorch: formatting
  maximpavliv
  committed
  9b5d8f1
- Benchmark pytorch: introduce n_frames and progress bar
  maximpavliv
  committed
  a29415d
- Benchmark pytorch: remove try-except block
  maximpavliv
  committed
  3660dcf
Commits on Jun 15, 2025
- Delete poetry.lock
  MMathisLab
  authored
  f8fb374
Commits on Aug 22, 2025
- SimCCPredictor: add visilibity computation (#131)
  maximpavliv
  authored
  a096c94
Commits on Jan 13, 2026
- [WIP] Continue work on Integration with DeepLabCut 3.0 (#127)
  
  authored
  ac75b2a
Commits on Jan 14, 2026
- Merge main into dlclive3
  deruyter92
  committed
  526a162
- Fix argument alignment in `benchmark_videos` call
  deruyter92
  committed
  cbc23ed
- Update pyproject.toml
  deruyter92
  committed
  770321d
- fix python version <3.13
  deruyter92
  committed
  cd4649e
- Update pyproject.toml: remove duplicate line
  
  deruyter92
  and
  Copilot
  authored
  e0e900a
- update CI
  deruyter92
  committed
  f5ce1a1
- Update pyproject.toml
  deruyter92
  committed
  690f285
- update display.py
  deruyter92
  committed
  8f1e844
- incorporate copilot suggestions
  deruyter92
  committed
  c6f7813
- Merge pull request #149: Make pyproject.toml PEP 517 / 518 / 621–compliant
  deruyter92
  authored
  ff0ecad
- merge branch 'main' into PR #121
  deruyter92
  committed
  9db0752
- fix video downloading in `check_install`.
  deruyter92
  committed
  b1158f5
- Update readme and installation docs
  deruyter92
  committed
  ecb3673
- update .gitignore (ignore .lock files)
  deruyter92
  committed
  7e9b4b4
- Minor refactors (comments, unused imports, unused variables)
  deruyter92
  committed
  11690ed
- remove unused script fix_deeplabcut_imports
  deruyter92
  committed
  6e2ad64
- add basic tests
  deruyter92
  committed
  72d073b
- update .gitignore
  deruyter92
  committed
  681c373
Commits on Jan 15, 2026
- Update CI workflow: include all tests
  
  deruyter92
  and
  sneakers-the-rat
  authored
  83390f0
Commits on Jan 19, 2026
- reformatting tests/* (apply copilot suggestions)
  deruyter92
  committed
  5be9409
- Add centralized `get_available_backends` function.
  deruyter92
  committed
  17a3a52
- remove redundant import checking
  deruyter92
  committed
  d914b22

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