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@CompGenomeLab

Computational Genomics Laboratory

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  1. PHACT PHACT Public

    This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager

    R 12 7

  2. PHACE PHACE Public

    Phylogeny-aware co-evolution

    R 12 3

  3. PHACTboost PHACTboost Public

    R 8 3

  4. boquila boquila Public

    NGS read simulator to eliminate read nucleotide bias in sequence analysis.

    Rust 6

  5. xr-ds-seq-snakemake xr-ds-seq-snakemake Public

    This repository contains xr-seq and damage-seq pipelines.

    Python 5

  6. missense_atlas missense_atlas Public

    Missense Atlas

    JavaScript 3

Repositories

Showing 10 of 40 repositories
  • GPCRevolution Public
    CompGenomeLab/GPCRevolution's past year of commit activity
    HTML 1 0 0 0 Updated Oct 22, 2026
  • ggner-3d Public

    Analysis code for RNAPII, nucleotide excision repair, and 3D genome dynamics after UV damage

    CompGenomeLab/ggner-3d's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 7, 2026
  • ner_rnapii_3d Public

    1D loop-extrusion simulation engine modeling RNAPII transcription, DNA lesions, CTCF boundaries, and repair dynamics

    CompGenomeLab/ner_rnapii_3d's past year of commit activity
    Python 0 0 0 0 Updated Aug 7, 2026
  • CompGenomeLab/GPCR_Superfamily's past year of commit activity
    Python 0 0 0 0 Updated Jul 25, 2026
  • brendo Public
    CompGenomeLab/brendo's past year of commit activity
    CSS 1 MIT 0 0 1 Updated Jul 18, 2026
  • PHACE Public

    Phylogeny-aware co-evolution

    CompGenomeLab/PHACE's past year of commit activity
    R 12 MIT 3 0 0 Updated Jul 7, 2026
  • uv-3d-ddr Public

    Genome architecture analysis, dataset generation, and GNN training/inference from the study 'UV-induced reorganization of 3D genome mediates DNA damage response'.

    CompGenomeLab/uv-3d-ddr's past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Jun 5, 2026
  • quiz-pool Public
    CompGenomeLab/quiz-pool's past year of commit activity
    Python 1 0 0 0 Updated Jun 2, 2026
  • CompGenomeLab/GPCR_Family_Divergence's past year of commit activity
    HTML 1 MIT 0 0 0 Updated May 7, 2026
  • PHACE-MP Public Forked from CompGenomeLab/PHACE

    Phylogeny-aware co-evolution

    CompGenomeLab/PHACE-MP's past year of commit activity
    R 0 MIT 3 0 0 Updated Apr 27, 2026

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