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BojarLab

Machine Learning in Glycobiology and Systems Biology

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  1. glycowork glycowork Public

    Package for processing and analyzing glycans and their role in biology.

    Jupyter Notebook 101 19

  2. CandyCrunch CandyCrunch Public

    Predicting glycan structure from LC-MS/MS data

    Jupyter Notebook 36 11

  3. GIFFLAR GIFFLAR Public archive

    Glycan Informed Foundational Framework for Learning Abstract Representations, based on Combinatorial Complexes and Heterogeneous GNNs [LEGACY; use glycowork implementation]

    HTML 9 2

  4. canonicalize_app canonicalize_app Public

    Canonicalize glycan sequences via a web app

    Python 2

  5. glycorender glycorender Public

    Bespoke renderer for GlycoDraw .svg into .pdf/.png

    Python

  6. glycontact glycontact Public

    GlyContact: a Python package for retrieving, processing, and analyzing 3D glycan structures.

    Jupyter Notebook 15 2

Repositories

Showing 10 of 20 repositories
  • CandyCrunch Public

    Predicting glycan structure from LC-MS/MS data

    BojarLab/CandyCrunch's past year of commit activity
    Jupyter Notebook 36 MIT 11 0 0 Updated Oct 7, 2026
  • glycowork Public

    Package for processing and analyzing glycans and their role in biology.

    BojarLab/glycowork's past year of commit activity
    Jupyter Notebook 101 MIT 19 0 0 Updated Oct 7, 2026
  • GlycoGauntlet Public

    Competition to annotate glycomics data

    BojarLab/GlycoGauntlet's past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 6, 2026
  • GlycoForge Public

    A simulation tool for generating glycomic relative-abundance datasets with customizable biological group differences and controllable batch-effect injection

    BojarLab/GlycoForge's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 4, 2026
  • glycontact Public

    GlyContact: a Python package for retrieving, processing, and analyzing 3D glycan structures.

    BojarLab/glycontact's past year of commit activity
    Jupyter Notebook 15 MIT 2 0 0 Updated Oct 3, 2026
  • glycorender Public

    Bespoke renderer for GlycoDraw .svg into .pdf/.png

    BojarLab/glycorender's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 29, 2026
  • Reaction-order Public

    Analyzing diamonds in the biosynthetic network to show preferred reaction order

    BojarLab/Reaction-order's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 16, 2026
  • canonicalize_app Public

    Canonicalize glycan sequences via a web app

    BojarLab/canonicalize_app's past year of commit activity
    Python 2 MIT 0 0 0 Updated Sep 9, 2026
  • GlycoGym Public
    BojarLab/GlycoGym's past year of commit activity
    Python 0 MIT 1 1 0 Updated Aug 12, 2026
  • Bio513_metabolomics Public

    Jupyter notebooks for the metabolomics computer lab in BIO513 — preprocessing, univariate statistics, PCA, and OPLS-DA of NMR urine metabolite profiles from critically ill children, using Python.

    BojarLab/Bio513_metabolomics's past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Apr 15, 2026
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