Issues

• Allow for clustering very large sets of cells

  AlexsLemonade/morphport#95 · Filter by author jashapiro opened on Oct 28, 2026

• Add Mean Average Precision (mAP) scoring

  AlexsLemonade/morphport#88 · Filter by author jashapiro opened on Oct 23, 2026

• Add condition/drug screen analyses to workflow

  Epic
  AlexsLemonade/morphport#87 · Filter by author jashapiro opened on Oct 23, 2026

• Consider how to support alternative cytotable conversion settings

  AlexsLemonade/morphport#83 · Filter by author jashapiro opened on Oct 22, 2026

• Update to typed processes

  AlexsLemonade/morphport#78 · Filter by author jashapiro opened on Oct 22, 2026

• Add metadata from sample sheet to table

  AlexsLemonade/morphport#67 · Filter by author jashapiro opened on Oct 13, 2026
  1

  

• Update container definitions to use nf-core 4.1 config files

  AlexsLemonade/morphport#64 · Filter by author jashapiro opened on Aug 7, 2026
  

• Create test data and tests for compute_embeddings module

  AlexsLemonade/morphport#57 · Filter by author jashapiro opened on Jul 23, 2026

• Epic: Improve unit testing in morphport

  Epic
  AlexsLemonade/morphport#56 · Filter by author jashapiro opened on Jul 23, 2026

• Epic: Initial full workflow for PCCMA output

  Epic
  AlexsLemonade/morphport#53 · Filter by author jashapiro opened on Jul 17, 2026

• Explore Hierarchical clustering options

  science
  AlexsLemonade/morphport#47 · Filter by author jashapiro opened on Jul 9, 2026

• Calculate consensus similarity matrices

  AlexsLemonade/morphport#43 · Filter by author jashapiro opened on Jun 22, 2026
  1

• Explore scientific questions related to processing

  Epicscience
  AlexsLemonade/morphport#40 · Filter by author jashapiro opened on Jun 9, 2026

• Evaluate Feature Selection options

  science
  AlexsLemonade/morphport#38 · Filter by author jashapiro opened on May 20, 2026

• Decide what to do with missing values/imputation

  science
  AlexsLemonade/morphport#34 · Filter by author jashapiro opened on May 18, 2026

• Process for batch normalization

  AlexsLemonade/morphport#16 · Filter by author jashapiro opened on Apr 25, 2026

• Add data and enable nf-test

  AlexsLemonade/morphport#8 · Filter by author jashapiro opened on Apr 15, 2026