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Update development branch - #4

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bgcasey merged 20 commits into
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Oct 12, 2026
Merged

bgcasey merged 20 commits into
developmentfrom
main

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@bgcasey bgcasey commented Oct 12, 2026

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bgcasey and others added 20 commits October 7, 2026 13:57
Getting the R&D pipeline working and in parity with the v2 model results
- Updated the README.md to improve clarity on the purpose and structure of the repository.
- Enhanced sections on the status of components, how the repository works, and the experiment pipeline.
- Added detailed instructions on building the dataset and running experiments.
- Improved the organization of the documentation, including clearer headings and subheadings.
- Added new sections on the test dataset, environment variables, and the module interface.
- Revised the status table to reflect the current state of the test dataset and pipeline.
- Updated the "Adding an experiment" and "Contributing a taxon module" sections for better guidance.
- Cleaned up redundant information and ensured consistency in terminology throughout the documentation.
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bgcasey merged commit afdfe3b into development Oct 12, 2026
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