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ABbiodiversity
sdmMethodsDev
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Improve code efficiency
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#2
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bgcasey
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Oct 7, 2026
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Improve code efficiency
#2
bgcasey
merged 16 commits into
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ABbiodiversity/sdmMethodsDev:development
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ABbiodiversity/sdmMethodsDev:improve_code_efficiency
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Commits on Oct 3, 2026
Add grid_summary.csv to tracked output tables in .gitignore
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Refactor framework design and documentation
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Updated readme to reflect updated pipeline
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Update parity_summary.csv and documentation for output clarity
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Commits on Oct 5, 2026
Enhance documentation for experiments and covariate handling
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Update README and documentation for xgboost integration
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Refactor dataset references to use published copies
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Commits on Oct 6, 2026
Remove harmonization script for v2 results
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Refactor README and taxon quirks documentation; remove legacy scripts and update references to ABMIexploreR results. Add run script for rebuilding test dataset and v2 reference with logging.
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Update README and getting_started documentation for comparison metrics
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Add new_experiment function to scaffold experiment folders and update documentation
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Add parity summary CSV file with climate and habitat data for various taxa
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Refactor code for clarity and efficiency; update comments and headers across multiple scripts
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Commits on Oct 7, 2026
Refactor documentation and comments across multiple modules for clarity and consistency
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Add comprehensive documentation for setup, experiments, harness, modules, and tests
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Add Quarto documentation site with GitHub Actions workflow
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