Issues

• Question: Partial Template using AF module

  sokrypton/ColabDesign#209 · Filter by author m-a-r-i-u-s opened on Jul 8, 2026

• ColabDesign not support RTX PRO 6000 Blackwell properly

  sokrypton/ColabDesign#205 · Filter by author guodong1988 opened on May 22, 2026

• Considering also implement the ca-only mode ?

  sokrypton/ColabDesign#204 · Filter by author daniel-dpq opened on Dec 13, 2025

• Question about aatype passed to AF2 structure module during design

  sokrypton/ColabDesign#203 · Filter by author tsjain opened on Oct 2, 2025

• homo-oligomeric binders

  sokrypton/ColabDesign#202 · Filter by author thomas-tugwell opened on Sep 22, 2025

• Legacy setup.py install will be deprecated

  sokrypton/ColabDesign#201 · Filter by author Markus92 opened on Aug 4, 2025

• Using CA-only ProteinMPNN models

  sokrypton/ColabDesign#200 · Filter by author gian-marco-visani-dyno opened on Jul 31, 2025

• Using ProteinMPNN *without* oxygens?

  sokrypton/ColabDesign#199 · Filter by author gian-marco-visani-dyno opened on Jul 31, 2025

• Using structural templates for the binder in AFdesign’s binder hallucination protocol

  sokrypton/ColabDesign#196 · Filter by author alexandre239 opened on Jun 4, 2025

• Package versions

  sokrypton/ColabDesign#195 · Filter by author LeoXue09 opened on Jun 2, 2025
  1

• dm-haiku version

  sokrypton/ColabDesign#194 · Filter by author raemisch opened on May 5, 2025

• ColabDesign error with trimmed interface/ectodomains

  sokrypton/ColabDesign#191 · Filter by author jicheng44 opened on Feb 28, 2025
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• Urgent: Unable to load custom PDB RFDiffusion

  sokrypton/ColabDesign#190 · Filter by author sbhakat opened on Feb 10, 2025
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• Size limit protein target in AfDesign

  sokrypton/ColabDesign#189 · Filter by author biostructaq25 opened on Jan 16, 2025

• Motif scaffolding a dimer with symmetry

  sokrypton/ColabDesign#188 · Filter by author nedru004 opened on Jan 9, 2025

• Template mode in AFcluster fails to retrieve pdb

  sokrypton/ColabDesign#185 · Filter by author leonart3 opened on Nov 4, 2024

• asymmetric inputs for get_con_loss inside _loss_binder

  sokrypton/ColabDesign#184 · Filter by author pagpires opened on Oct 9, 2024

• mk_af_model.predict and localcolabfold

  sokrypton/ColabDesign#183 · Filter by author vuhongai opened on Oct 8, 2024
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• ColabDesign RFdiffusion FileNotFoundError

  sokrypton/ColabDesign#181 · Filter by author ttessie2 opened on Oct 4, 2024
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• ColabDesign license

  sokrypton/ColabDesign#180 · Filter by author komatsuna-san opened on Oct 3, 2024
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• options for ligandmpnn in colabdesign

  sokrypton/ColabDesign#179 · Filter by author ShuhaoGithub opened on Sep 4, 2024

• WARNING: 'model_1_ptm' not found WARNING: 'model_2_ptm' not found

  sokrypton/ColabDesign#178 · Filter by author wendi-luo opened on Jul 2, 2024

• error in cyclic design notebook

  sokrypton/ColabDesign#175 · Filter by author overlord1647 opened on Jun 19, 2024

• MMSEQ2 NCBI labels (how can we keep them)

  sokrypton/ColabDesign#174 · Filter by author MishterBluesky opened on Jun 6, 2024

• Is it preferable for the "con" metric to have a smaller value during the optimization process?

  sokrypton/ColabDesign#171 · Filter by author milkboylyf opened on Feb 20, 2024