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Fix #13290 (Import project: -isystem in compile_commands.json) #24242

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Job	Run time
build_cmake_boost (macos-15)	59s
build (ubuntu-22.04)	9m 28s
build_cmake_cxxstd (ubuntu-22.04, 17)	5m 1s
build_cmake_cxxstd (ubuntu-22.04, 14)	1m 34s
build_mathlib (macos-15)	2m 56s
check_nonneg (ubuntu-22.04)	21s
build (macos-15)	12m 55s
build_uchar (ubuntu-22.04)	3m 17s
build_cmake (ubuntu-22.04)	7m 44s
build_cmake (macos-15)	4m 38s
build_mathlib (ubuntu-22.04)	1m 49s
build_cmake_minimum	44s
build_cmake_cxxstd (macos-15, 17)	4m 53s
check_nonneg (macos-15)	37s
build_cmake_tinyxml2 (ubuntu-22.04)	3m 57s
build_uchar (macos-15)	2m 22s
build_cmake_cxxstd (ubuntu-22.04, 20)	1m 10s
build_cmake_tinyxml2 (macos-15)	3m 21s
build_cmake_cxxstd (macos-15, 14)	3m 5s
selfcheck	34m 30s
	1h 45m 21s