diff --git a/.coveragerc-core b/.coveragerc-core
index 00f5e75..b36c0af 100644
--- a/.coveragerc-core
+++ b/.coveragerc-core
@@ -3,9 +3,7 @@ branch = True
 source = biofilter
 omit =
     */tests/*
-    */biofilter/alembic/*
     */biofilter/modules/etl/dtps/*
-    */biofilter/modules/report/reports_bkp/*
 
 [report]
 show_missing = True
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
index 57d2455..440983c 100644
--- a/.github/workflows/test.yml
+++ b/.github/workflows/test.yml
@@ -9,13 +9,20 @@ jobs:
   test:
     runs-on: ubuntu-latest
 
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    name: test (py${{ matrix.python-version }})
+
     steps:
       - uses: actions/checkout@v4
 
       - name: Set up Python
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: ${{ matrix.python-version }}
 
       - name: Install Poetry
         run: |
diff --git a/README.md b/README.md
index 580d723..a42ebcc 100644
--- a/README.md
+++ b/README.md
@@ -15,7 +15,7 @@ A **bundle**: a dated directory of Parquet files with a `manifest.json`
 describing them.
 
 ```
-20260914/
+bundle/
 ├── manifest.json        the catalogue: every file, its rows, its size
 ├── bundle_plan.json     which sources went in, at which versions
 ├── build_record.json    what each build run did, in order
@@ -87,13 +87,13 @@ for the disk, time and memory it takes.
 
 Biofilter has two halves, separated by the bundle rather than by an API.
 
-| | Builds a bundle | Reads a bundle |
-|---|---|---|
-| Who | whoever maintains the data | everyone else |
-| How often | a few times a year | constantly |
-| Engine | SQLAlchemy models, staging SQLite | DuckDB, in process |
-| Can write | yes — it is the only code that can | no, structurally |
-| Commands | `bundle`, `etl`, `db` | `report` |
+|           | Builds a bundle                    | Reads a bundle     |
+| --------- | ---------------------------------- | ------------------ |
+| Who       | whoever maintains the data         | everyone else      |
+| How often | a few times a year                 | constantly         |
+| Engine    | SQLAlchemy models, staging SQLite  | DuckDB, in process |
+| Can write | yes — it is the only code that can | no, structurally   |
+| Commands  | `bundle`, `etl`, `db`              | `report`           |
 
 The build runs in **two branches**. The core — genes, proteins, pathways,
 diseases, GO, chemicals and their relationships — is about 7 million rows and
@@ -103,7 +103,7 @@ no foreign keys, so there is nothing to resolve and nothing to stage: it writes
 its final Parquet directly.
 
 📖 [System Overview](https://biofilter.readthedocs.io/en/latest/technical/system_overview.html)
- · [The Read Path](https://biofilter.readthedocs.io/en/latest/technical/read_path.html)
+· [The Read Path](https://biofilter.readthedocs.io/en/latest/technical/read_path.html)
 
 ---
 
@@ -112,14 +112,14 @@ its final Parquet directly.
 A report takes a list of things you have and returns a table. Seventeen of
 them, in six families:
 
-| Family | What they answer |
-|---|---|
-| `resolve_*` | Which of my names does Biofilter recognise? |
-| `annotate_*` | What is known about these genes, variants, proteins, pathways, diseases, GO terms? |
-| `expand_*` | What is connected to them — neighbours, relationships, variants in a gene, regulatory evidence? |
-| `pair_*` | Which of these genes or variants share biology, and on what support? |
-| `aggregate_*` | Roll a cohort's variants up to a summary. |
-| `platform_*` | What does this bundle contain, and how was it built? |
+| Family        | What they answer                                                                                |
+| ------------- | ----------------------------------------------------------------------------------------------- |
+| `resolve_*`   | Which of my names does Biofilter recognise?                                                     |
+| `annotate_*`  | What is known about these genes, variants, proteins, pathways, diseases, GO terms?              |
+| `expand_*`    | What is connected to them — neighbours, relationships, variants in a gene, regulatory evidence? |
+| `pair_*`      | Which of these genes or variants share biology, and on what support?                            |
+| `aggregate_*` | Roll a cohort's variants up to a summary.                                                       |
+| `platform_*`  | What does this bundle contain, and how was it built?                                            |
 
 ```bash
 biofilter report list --verbose
@@ -133,14 +133,14 @@ biofilter report explain --report-name expand_gene_to_variant
 
 One per report, runnable against a bundle:
 
-| | |
-|---|---|
-| [`reports__101`](notebooks/templates/reports__101.ipynb) | **start here** — how reports work |
-| [`reports__resolve_entity`](notebooks/templates/reports__resolve_entity.ipynb) | start here for a new input list |
-| [`reports__annotate_gene`](notebooks/templates/reports__annotate_gene.ipynb) | annotating a gene list |
-| [`reports__expand_gene_to_variant`](notebooks/templates/reports__expand_gene_to_variant.ipynb) | variants in a gene, filtered by predicted damage |
-| [`reports__aggregate_cohort_variants`](notebooks/templates/reports__aggregate_cohort_variants.ipynb) | a cohort, matched and binned |
-| [`reports__TEMPLATE`](notebooks/templates/reports__TEMPLATE.ipynb) | copy this to write a new report |
+|                                                                                                      |                                                  |
+| ---------------------------------------------------------------------------------------------------- | ------------------------------------------------ |
+| [`reports__101`](notebooks/templates/reports__101.ipynb)                                             | **start here** — how reports work                |
+| [`reports__resolve_entity`](notebooks/templates/reports__resolve_entity.ipynb)                       | start here for a new input list                  |
+| [`reports__annotate_gene`](notebooks/templates/reports__annotate_gene.ipynb)                         | annotating a gene list                           |
+| [`reports__expand_gene_to_variant`](notebooks/templates/reports__expand_gene_to_variant.ipynb)       | variants in a gene, filtered by predicted damage |
+| [`reports__aggregate_cohort_variants`](notebooks/templates/reports__aggregate_cohort_variants.ipynb) | a cohort, matched and binned                     |
+| [`reports__TEMPLATE`](notebooks/templates/reports__TEMPLATE.ipynb)                                   | copy this to write a new report                  |
 
 All of them: [`notebooks/templates/`](notebooks/templates/)
 
@@ -203,7 +203,7 @@ apptainer run \
 `--output` writes inside the container, so it has to point at `/workspace`.
 
 📖 [docker/README.md](docker/README.md) · Penn LPC users:
-[lpc__quickstart.md](notebooks/lpc__quickstart.md)
+[lpc\_\_quickstart.md](notebooks/lpc__quickstart.md)
 
 ---
 
diff --git a/assistent/gpt_builder/consolidated/bf4_agents.md b/assistent/gpt_builder/consolidated/bf4_agents.md
index ce5c5f5..b16f05e 100644
--- a/assistent/gpt_builder/consolidated/bf4_agents.md
+++ b/assistent/gpt_builder/consolidated/bf4_agents.md
@@ -170,7 +170,7 @@ one; the wrapper is what carries `.provenance`, `.num_rows` and `.columns`.
 
 ## 8) The reports
 
-Sixteen, in six families. `biofilter report list --verbose` is always the
+Seventeen, in six families. `biofilter report list --verbose` is always the
 authority for what your install has.
 
 | Family | Reports |
@@ -178,7 +178,7 @@ authority for what your install has.
 | `annotate_*` | `annotate_gene`, `annotate_variant`, `annotate_protein`, `annotate_disease`, `annotate_pathway`, `annotate_go` |
 | `expand_*` | `expand_gene_to_variant`, `expand_variant_regulatory`, `expand_entity_neighborhood`, `expand_entity_relationship` |
 | `resolve_*` | `resolve_entity` |
-| `pair_*` | `pair_variants` |
+| `pair_*` | `pair_genes`, `pair_variants` |
 | `aggregate_*` | `aggregate_cohort_variants` |
 | `platform_*` | `platform_data_statistics`, `platform_etl_status`, `platform_etl_packages` |
 
@@ -191,6 +191,7 @@ By the question instead:
 | rsIDs or positions | `annotate_variant` |
 | genes, want the variants in them | `expand_gene_to_variant` |
 | variants, want what they regulate | `expand_variant_regulatory` |
+| genes, want pairs that share biology | `pair_genes` |
 | variants, want candidate pairs | `pair_variants` |
 | a cohort | `aggregate_cohort_variants` |
 | a bundle you do not know | `platform_data_statistics` |
@@ -353,7 +354,7 @@ docker run --rm \
   -v /path/to/bundles/20260914:/bundle:ro \
   -v "$PWD/out:/workspace" \
   --user "$(id -u):$(id -g)" \
-  ricoandre/biofilter:latest \
+  ghcr.io/ritchielab/biofilter:latest \
   report run --report-name annotate_gene --input TP53 --output /workspace/genes.csv
 ```
 
@@ -361,7 +362,7 @@ Under Apptainer, `--bind` replaces `-v` and output ownership takes care of
 itself:
 
 ```bash
-apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter-hpc:latest
+apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter:latest
 ```
 
 ### 3.3 Option C - Source
diff --git a/assistent/gpt_builder/consolidated/bf4_docs.md b/assistent/gpt_builder/consolidated/bf4_docs.md
index ac9b680..facd99f 100644
--- a/assistent/gpt_builder/consolidated/bf4_docs.md
+++ b/assistent/gpt_builder/consolidated/bf4_docs.md
@@ -475,10 +475,10 @@ python -c "from biofilter import Biofilter; print('OK')"
 
 ## Docker
 
-One image, published to two registries. Pull it rather than building:
+One image, for Docker and Apptainer alike. Pull it rather than building:
 
 ```bash
-docker pull ricoandre/biofilter:latest
+docker pull ghcr.io/ritchielab/biofilter:latest
 ```
 
 The image carries no data. It expects two mounts:
@@ -496,7 +496,7 @@ docker run --rm \
   -v /shared/bundles/20260914:/bundle:ro \
   -v "$(pwd)/out:/workspace" \
   --user "$(id -u):$(id -g)" \
-  ricoandre/biofilter:latest \
+  ghcr.io/ritchielab/biofilter:latest \
   report run --report-name annotate_gene --input TP53 --output /workspace/genes.csv
 ```
 
@@ -515,7 +515,7 @@ docker run --rm -it \
   -v /shared/bundles/20260914:/bundle:ro \
   -v "$(pwd):/workspace" \
   --entrypoint /bin/bash \
-  ricoandre/biofilter:latest
+  ghcr.io/ritchielab/biofilter:latest
 ```
 
 To build it yourself from a checkout:
@@ -530,7 +530,7 @@ The same image. `--bind` replaces `-v`, and output ownership takes care of
 itself because the container runs as you:
 
 ```bash
-apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter-hpc:latest
+apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter:latest
 
 apptainer run \
   --bind /shared/bundles/20260914:/bundle:ro \
@@ -539,8 +539,8 @@ apptainer run \
   report run --report-name annotate_gene --input APOE --output /workspace/apoe.csv
 ```
 
-The GHCR name `biofilter-hpc` predates the merge of what used to be two
-images; it is the same image as Docker Hub's.
+It is the same image either way — what changes is `--bind` in place of
+`-v`, and that Apptainer runs the container as you.
 
 ## From source
 
@@ -2323,7 +2323,7 @@ to that path, or the file leaves with the container:
 docker run --rm \
   -v /shared/bundles/20260914:/bundle:ro \
   -v "$(pwd)/out:/workspace" \
-  ricoandre/biofilter:latest \
+  ghcr.io/ritchielab/biofilter:latest \
   report run --report-name platform_etl_status --output /workspace/etl_status.csv
 ```
 
diff --git a/assistent/gpt_builder/consolidated/bf4_faq.md b/assistent/gpt_builder/consolidated/bf4_faq.md
index a203d56..26381a0 100644
--- a/assistent/gpt_builder/consolidated/bf4_faq.md
+++ b/assistent/gpt_builder/consolidated/bf4_faq.md
@@ -36,7 +36,7 @@ provenance inside the file.
 biofilter report list --verbose
 ```
 
-Sixteen, in six families. By the shape of the question:
+Seventeen, in six families. By the shape of the question:
 
 | You have | Report |
 |---|---|
@@ -53,6 +53,7 @@ Sixteen, in six families. By the shape of the question:
 | a gene-to-anything list of your own, want the pairs it implies | `pair_genes` |
 | a cohort | `aggregate_cohort_variants` |
 | a bundle you do not know | `platform_data_statistics` |
+| to know what ran to build it | `platform_etl_status`, and `platform_etl_packages` for the raw record |
 
 ### A2b) `pair_variants` or `pair_genes`?
 
@@ -399,7 +400,7 @@ docker run --rm \
   -v /path/to/bundles/20260914:/bundle:ro \
   -v "$PWD/out:/workspace" \
   --user "$(id -u):$(id -g)" \
-  ricoandre/biofilter:latest \
+  ghcr.io/ritchielab/biofilter:latest \
   report run --report-name annotate_gene --input TP53 --output /workspace/genes.csv
 ```
 
@@ -419,7 +420,7 @@ container runs as you.
 ### D4) Apptainer / Singularity
 
 ```bash
-apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter-hpc:latest
+apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter:latest
 
 apptainer run \
   --bind /path/to/bundles/20260914:/bundle:ro \
@@ -428,7 +429,7 @@ apptainer run \
   report run --report-name annotate_gene --input APOE --output /workspace/apoe.csv
 ```
 
-Same image as Docker Hub; the `-hpc` name is historical.
+The same image as the Docker example above; only the mount flag differs.
 
 ---
 
diff --git a/assistent/gpt_builder/consolidated/bf4_notebooks.md b/assistent/gpt_builder/consolidated/bf4_notebooks.md
index 4871f09..2af7c11 100644
--- a/assistent/gpt_builder/consolidated/bf4_notebooks.md
+++ b/assistent/gpt_builder/consolidated/bf4_notebooks.md
@@ -185,7 +185,7 @@ missing source or a version mismatch are printed, not raised.
 If you prefer a container to the module:
 
 ```bash
-apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter-hpc:latest
+apptainer pull bf4.sif docker://ghcr.io/ritchielab/biofilter:latest
 
 apptainer run \
   --bind /project/hall_shared/datasets/biofilter/<snapshot>:/bundle:ro \
@@ -1139,10 +1139,10 @@ from pathlib import Path
 
 from biofilter import Biofilter
 
-BUNDLE = "/Users/andrerico/Works/Sys/biofilter_430/biofilter_data/bundles/20260914" # change this to the path of your biofilter_data bundle
+BUNDLE = None  # set a path to override; None reads [database] bundle from .biofilter.toml
 REPORT = "annotate_gene"
 
-bf = Biofilter(bundle=BUNDLE, debug_mode=False)
+bf = Biofilter(bundle=BUNDLE, debug_mode=False) if BUNDLE else Biofilter(debug_mode=False)
 
 # Results land here whatever directory the kernel was started in — VS Code
 # and Jupyter disagree about that, and a bare filename ends up wherever
diff --git a/notebooks/templates/reports__annotate_gene.ipynb b/notebooks/templates/reports__annotate_gene.ipynb
index 2bc3e5e..e1b1f9f 100644
--- a/notebooks/templates/reports__annotate_gene.ipynb
+++ b/notebooks/templates/reports__annotate_gene.ipynb
@@ -63,10 +63,10 @@
     "\n",
     "from biofilter import Biofilter\n",
     "\n",
-    "BUNDLE = \"/Users/andrerico/Works/Sys/biofilter_430/biofilter_data/bundles/20260914\" # change this to the path of your biofilter_data bundle\n",
+    "BUNDLE = None  # set a path to override; None reads [database] bundle from .biofilter.toml\n",
     "REPORT = \"annotate_gene\"\n",
     "\n",
-    "bf = Biofilter(bundle=BUNDLE, debug_mode=False)\n",
+    "bf = Biofilter(bundle=BUNDLE, debug_mode=False) if BUNDLE else Biofilter(debug_mode=False)\n",
     "\n",
     "# Results land here whatever directory the kernel was started in \u2014 VS Code\n",
     "# and Jupyter disagree about that, and a bare filename ends up wherever\n",
diff --git a/poetry.lock b/poetry.lock
index f6fb324..5541c95 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -51,6 +51,17 @@ files = [
 astroid = ["astroid (>=2,<5)"]
 test = ["astroid (>=2,<5)", "pytest (<9.0)", "pytest-cov", "pytest-xdist"]
 
+[[package]]
+name = "attrs"
+version = "26.1.0"
+description = "Classes Without Boilerplate"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "attrs-26.1.0-py3-none-any.whl", hash = "sha256:c647aa4a12dfbad9333ca4e71fe62ddc36f4e63b2d260a37a8b83d2f043ac309"},
+    {file = "attrs-26.1.0.tar.gz", hash = "sha256:d03ceb89cb322a8fd706d4fb91940737b6642aa36998fe130a9bc96c985eff32"},
+]
+
 [[package]]
 name = "babel"
 version = "2.18.0"
@@ -133,6 +144,24 @@ d = ["aiohttp (>=3.10)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
+[[package]]
+name = "bleach"
+version = "6.4.0"
+description = "An easy safelist-based HTML-sanitizing tool."
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "bleach-6.4.0-py3-none-any.whl", hash = "sha256:4b6b6a54fff2e69a3dde9d21cc6301220bee3c3cb792187d11403fd795031081"},
+    {file = "bleach-6.4.0.tar.gz", hash = "sha256:4202482733d85cedd04e59fcb2f89f4e4c7c385a78d3c3c23c30446843a37452"},
+]
+
+[package.dependencies]
+tinycss2 = {version = ">=1.1.0", optional = true, markers = "extra == \"css\""}
+webencodings = "*"
+
+[package.extras]
+css = ["tinycss2 (>=1.1.0)"]
+
 [[package]]
 name = "cachetools"
 version = "7.0.5"
@@ -267,42 +296,6 @@ files = [
 [package.dependencies]
 pycparser = {version = "*", markers = "implementation_name != \"PyPy\""}
 
-[[package]]
-name = "chardet"
-version = "7.2.0"
-description = "Universal character encoding detector"
-optional = false
-python-versions = ">=3.10"
-files = [
-    {file = "chardet-7.2.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:556d6f81bd4131f7b2d4aa535f3061cd381853d4db7ea5c0a15dd5f1a3f39b66"},
-    {file = "chardet-7.2.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:a8b4c05733a517a2f53beb8d740cd6c5a1f4387c3dcbeb78380b848498fee8a6"},
-    {file = "chardet-7.2.0-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:ce80e8b62bb88135d36b9d4b95a6d9624ea862090bfd0228f9fee4a6aafaffc8"},
-    {file = "chardet-7.2.0-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:8190584663b8c051db28be5174d1c5774d7b7a5112e47152c02fd50bdf6405ad"},
-    {file = "chardet-7.2.0-cp310-cp310-win_amd64.whl", hash = "sha256:dfcf826f413be2d94605ecb2089f29e189cf6ed9baa30d9b2c8868da2e142398"},
-    {file = "chardet-7.2.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:a8685b331c4896e9135bd748387f713dd53c019475ae1b8238b8f59be1668acd"},
-    {file = "chardet-7.2.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:fa14cc0e7d2142dd313524b3a339e15cbd8b7a8a7e11a560686e0b6f58038ec9"},
-    {file = "chardet-7.2.0-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:4c51a3d8aa3c162be0495404b39bb1c137b44a634c1f46e2909e2c6a60349c00"},
-    {file = "chardet-7.2.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:347ed77bb5eed8929fae7482671690a15c731d66808f1ff0ce7d22224ca7ec79"},
-    {file = "chardet-7.2.0-cp311-cp311-win_amd64.whl", hash = "sha256:d298762002a6b6e81dbcc81ade9e0882e579e968f4801daf4d8ffd6a31b99552"},
-    {file = "chardet-7.2.0-cp312-cp312-macosx_10_13_x86_64.whl", hash = "sha256:c4604344380a6f9b982c28855c1edfd23a45a2c9142b9a34bc0c08986049f398"},
-    {file = "chardet-7.2.0-cp312-cp312-macosx_11_0_arm64.whl", hash = "sha256:195c54d8f04a7a9c321cb7cebececa35b1c818c7aa7c195086bae10fcbb3391f"},
-    {file = "chardet-7.2.0-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:ddd03a67fca8c91287f8718dfbe3f94c2c1aa1fd3a82433b693f5b868dedf319"},
-    {file = "chardet-7.2.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:8f6af0fa005b9488c8fbf8fec2ad7023531970320901d6334c50844ccca9b117"},
-    {file = "chardet-7.2.0-cp312-cp312-win_amd64.whl", hash = "sha256:e8853c71ea1261bcc1b8f8b171acb7c272a5cfd06b57729c460241ee38705049"},
-    {file = "chardet-7.2.0-cp313-cp313-macosx_10_13_x86_64.whl", hash = "sha256:6cdbe9404534cda0d28f172e91fa50db7655ae6262d093b0337a5aa47a47a5f6"},
-    {file = "chardet-7.2.0-cp313-cp313-macosx_11_0_arm64.whl", hash = "sha256:427d091994456cc16dbd1e20ae73fee068b9a31f3c90b75072f722d5dbbf156f"},
-    {file = "chardet-7.2.0-cp313-cp313-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:cad2cd094dfb14cfcb86b0a77568d23375b0005ea0144a726910df6f5c8a46b8"},
-    {file = "chardet-7.2.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:23e6acd1a58050d7c2aeecca700c0cf27b5ec4f6153a82c3b51c31b94c6ebfad"},
-    {file = "chardet-7.2.0-cp313-cp313-win_amd64.whl", hash = "sha256:dc5d034faa5b4a2a3af54e24881b2caef9b41fea00a4dddccf97a1e8ec51a213"},
-    {file = "chardet-7.2.0-cp314-cp314-macosx_10_15_x86_64.whl", hash = "sha256:719c572c4751c201f42134bd2aa0826928ed5113d29dfa482338c1a89bb925fa"},
-    {file = "chardet-7.2.0-cp314-cp314-macosx_11_0_arm64.whl", hash = "sha256:13a94d2c0dace263b8dcb61593c165d5749d60e2e2314231938eb87755c9de9f"},
-    {file = "chardet-7.2.0-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl", hash = "sha256:a1f081a0f3fce8e1c8f5d6b3691a4960aacc33f213f77ef8b89a6b5f0af4cadf"},
-    {file = "chardet-7.2.0-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl", hash = "sha256:b56152a17d19249388ae99a85a31c35bb8d5b421b90581226de34b2b316be806"},
-    {file = "chardet-7.2.0-cp314-cp314-win_amd64.whl", hash = "sha256:7077dc2435b95163db4206aa71ebc329da5bcddb8bfce69440ff8ecf637400bf"},
-    {file = "chardet-7.2.0-py3-none-any.whl", hash = "sha256:f8ea866b9fbd8df5f19032d765a4d81dcbf6194a3c7388b44d378d02c9784170"},
-    {file = "chardet-7.2.0.tar.gz", hash = "sha256:4ef7292b1342ea805c32cce58a45db204f59d080ed311d6cdaa7ca747fcc0cd5"},
-]
-
 [[package]]
 name = "charset-normalizer"
 version = "3.4.6"
@@ -824,6 +817,17 @@ files = [
     {file = "decorator-5.3.1.tar.gz", hash = "sha256:4cbcdd55a6efadb9dbea26b858f4fb3264567b52d69ca0d25b721b553f60ea82"},
 ]
 
+[[package]]
+name = "defusedxml"
+version = "0.7.1"
+description = "XML bomb protection for Python stdlib modules"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+files = [
+    {file = "defusedxml-0.7.1-py2.py3-none-any.whl", hash = "sha256:a352e7e428770286cc899e2542b6cdaedb2b4953ff269a210103ec58f6198a61"},
+    {file = "defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69"},
+]
+
 [[package]]
 name = "dill"
 version = "0.4.1"
@@ -988,6 +992,20 @@ files = [
 [package.extras]
 tests = ["asttokens (>=2.1.0)", "coverage", "coverage-enable-subprocess", "ipython", "littleutils", "pytest", "rich"]
 
+[[package]]
+name = "fastjsonschema"
+version = "2.22.2"
+description = "Fastest Python implementation of JSON schema"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "fastjsonschema-2.22.2-py3-none-any.whl", hash = "sha256:0fb3915616adac85ccfdd737d26be1089845d2019819505b42d39888458f74d4"},
+    {file = "fastjsonschema-2.22.2.tar.gz", hash = "sha256:72064e12356a7d6ef02165be2946b9abadbdf238536e07eb587e3dbaa33099cf"},
+]
+
+[package.extras]
+devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"]
+
 [[package]]
 name = "filelock"
 version = "3.25.2"
@@ -1308,6 +1326,41 @@ MarkupSafe = ">=2.0"
 [package.extras]
 i18n = ["Babel (>=2.7)"]
 
+[[package]]
+name = "jsonschema"
+version = "4.26.0"
+description = "An implementation of JSON Schema validation for Python"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "jsonschema-4.26.0-py3-none-any.whl", hash = "sha256:d489f15263b8d200f8387e64b4c3a75f06629559fb73deb8fdfb525f2dab50ce"},
+    {file = "jsonschema-4.26.0.tar.gz", hash = "sha256:0c26707e2efad8aa1bfc5b7ce170f3fccc2e4918ff85989ba9ffa9facb2be326"},
+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+jsonschema-specifications = ">=2023.03.6"
+referencing = ">=0.28.4"
+rpds-py = ">=0.25.0"
+
+[package.extras]
+format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "rfc3987-syntax (>=1.1.0)", "uri-template", "webcolors (>=24.6.0)"]
+
+[[package]]
+name = "jsonschema-specifications"
+version = "2025.9.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "jsonschema_specifications-2025.9.1-py3-none-any.whl", hash = "sha256:98802fee3a11ee76ecaca44429fda8a41bff98b00a0f2838151b113f210cc6fe"},
+    {file = "jsonschema_specifications-2025.9.1.tar.gz", hash = "sha256:b540987f239e745613c7a9176f3edb72b832a4ac465cf02712288397832b5e8d"},
+]
+
+[package.dependencies]
+referencing = ">=0.31.0"
+
 [[package]]
 name = "jupyter-client"
 version = "8.10.0"
@@ -1351,6 +1404,17 @@ traitlets = ">=5.3"
 docs = ["intersphinx-registry", "myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinxcontrib-spelling", "traitlets"]
 test = ["ipykernel", "pre-commit", "pytest (<9)", "pytest-cov", "pytest-timeout"]
 
+[[package]]
+name = "jupyterlab-pygments"
+version = "0.3.0"
+description = "Pygments theme using JupyterLab CSS variables"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jupyterlab_pygments-0.3.0-py3-none-any.whl", hash = "sha256:841a89020971da1d8693f1a99997aefc5dc424bb1b251fd6322462a1b8842780"},
+    {file = "jupyterlab_pygments-0.3.0.tar.gz", hash = "sha256:721aca4d9029252b11cfa9d185e5b5af4d54772bb8072f9b7036f4170054d35d"},
+]
+
 [[package]]
 name = "kiwisolver"
 version = "1.5.0"
@@ -1910,6 +1974,20 @@ files = [
     {file = "mdurl-0.1.2.tar.gz", hash = "sha256:bb413d29f5eea38f31dd4754dd7377d4465116fb207585f97bf925588687c1ba"},
 ]
 
+[[package]]
+name = "mistune"
+version = "3.3.4"
+description = "A sane and fast Markdown parser with useful plugins and renderers"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "mistune-3.3.4-py3-none-any.whl", hash = "sha256:ee015381e955e370962968befe1d729ab60fafb6a715ac6751763fbce38c8d4a"},
+    {file = "mistune-3.3.4.tar.gz", hash = "sha256:58b5c96d6fcb61190dfe5fae498d2b2065f99cf61e9649418fd54cf1ada86dfe"},
+]
+
+[package.dependencies]
+typing-extensions = {version = "*", markers = "python_version < \"3.11\""}
+
 [[package]]
 name = "mypy-extensions"
 version = "1.1.0"
@@ -1947,6 +2025,85 @@ rtd = ["ipython", "sphinx (>=7)", "sphinx-autodoc2 (>=0.5.0,<0.6.0)", "sphinx-bo
 testing = ["beautifulsoup4", "coverage[toml]", "defusedxml", "pygments (<2.19)", "pytest (>=8,<9)", "pytest-cov", "pytest-param-files (>=0.6.0,<0.7.0)", "pytest-regressions", "sphinx-pytest"]
 testing-docutils = ["pygments", "pytest (>=8,<9)", "pytest-param-files (>=0.6.0,<0.7.0)"]
 
+[[package]]
+name = "nbclient"
+version = "0.11.0"
+description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
+optional = false
+python-versions = ">=3.10.0"
+files = [
+    {file = "nbclient-0.11.0-py3-none-any.whl", hash = "sha256:ef7fa0d59d6e1d41103933d8a445a18d5de860ca6b613b87b8574accdb3c2895"},
+    {file = "nbclient-0.11.0.tar.gz", hash = "sha256:04a134a5b087f2c5887f228aca155db50169b8cd9334dee6942c8e927e56081a"},
+]
+
+[package.dependencies]
+jupyter-client = ">=7.0.0"
+jupyter-core = ">=5.4.0"
+nbformat = ">=5.2.0"
+traitlets = ">=5.13"
+
+[package.extras]
+dev = ["pre-commit"]
+docs = ["autodoc-traits", "flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "mock", "moto", "myst-parser", "nbconvert (>=7.1.0)", "pytest (>=9.0.1,<10)", "pytest-asyncio (>=1.3.0)", "pytest-cov (>=4.0)", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling", "testpath", "xmltodict"]
+test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.1.0)", "pytest (>=9.0.1,<10)", "pytest-asyncio (>=1.3.0)", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
+
+[[package]]
+name = "nbconvert"
+version = "7.17.1"
+description = "Convert Jupyter Notebooks (.ipynb files) to other formats."
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "nbconvert-7.17.1-py3-none-any.whl", hash = "sha256:aa85c087b435e7bf1ffd03319f658e285f2b89eccab33bc1ba7025495ab3e7c8"},
+    {file = "nbconvert-7.17.1.tar.gz", hash = "sha256:34d0d0a7e73ce3cbab6c5aae8f4f468797280b01fd8bd2ca746da8569eddd7d2"},
+]
+
+[package.dependencies]
+beautifulsoup4 = "*"
+bleach = {version = "!=5.0.0", extras = ["css"]}
+defusedxml = "*"
+jinja2 = ">=3.0"
+jupyter-core = ">=4.7"
+jupyterlab-pygments = "*"
+markupsafe = ">=2.0"
+mistune = ">=2.0.3,<4"
+nbclient = ">=0.5.0"
+nbformat = ">=5.7"
+packaging = "*"
+pandocfilters = ">=1.4.1"
+pygments = ">=2.4.1"
+traitlets = ">=5.1"
+
+[package.extras]
+all = ["flaky", "intersphinx-registry", "ipykernel", "ipython", "ipywidgets (>=7.5)", "myst-parser", "nbsphinx (>=0.2.12)", "playwright", "pydata-sphinx-theme", "pyqtwebengine (>=5.15)", "pytest (>=7)", "sphinx (>=5.0.2)", "sphinxcontrib-spelling", "tornado (>=6.1)"]
+docs = ["intersphinx-registry", "ipykernel", "ipython", "myst-parser", "nbsphinx (>=0.2.12)", "pydata-sphinx-theme", "sphinx (>=5.0.2)", "sphinxcontrib-spelling"]
+qtpdf = ["pyqtwebengine (>=5.15)"]
+qtpng = ["pyqtwebengine (>=5.15)"]
+serve = ["tornado (>=6.1)"]
+test = ["flaky", "ipykernel", "ipywidgets (>=7.5)", "pytest (>=7)"]
+webpdf = ["playwright"]
+
+[[package]]
+name = "nbformat"
+version = "5.11.1"
+description = "The Jupyter Notebook format"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "nbformat-5.11.1-py3-none-any.whl", hash = "sha256:cc6698fa75f4fab8755ead786317815f13a6fee3b53311c0abb1a8b51d52f7ec"},
+    {file = "nbformat-5.11.1.tar.gz", hash = "sha256:32d4521c68c6e7d5b29c76defaeed9f42ea733142b9b19f88277ce10390b9c4d"},
+]
+
+[package.dependencies]
+fastjsonschema = ">=2.15"
+jsonschema = ">=2.6"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
+traitlets = ">=5.1"
+
+[package.extras]
+docs = ["intersphinx-registry", "myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
+test = ["packaging", "pre-commit", "pytest", "testpath"]
+
 [[package]]
 name = "nest-asyncio2"
 version = "1.7.2"
@@ -2038,13 +2195,13 @@ et-xmlfile = "*"
 
 [[package]]
 name = "packaging"
-version = "24.1"
+version = "26.3"
 description = "Core utilities for Python packages"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
-    {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
+    {file = "packaging-26.3-py3-none-any.whl", hash = "sha256:d7193f7c8e4e93f444fde0262bf90af30e16fa0ad0ad44cb553c87339b23cd1c"},
+    {file = "packaging-26.3.tar.gz", hash = "sha256:94edc256424af38762eb31306eed28beb9f0efc50a8837492c9d6fd6004aed79"},
 ]
 
 [[package]]
@@ -2146,6 +2303,17 @@ sql-other = ["SQLAlchemy (>=2.0.0)", "adbc-driver-postgresql (>=0.8.0)", "adbc-d
 test = ["hypothesis (>=6.46.1)", "pytest (>=7.3.2)", "pytest-xdist (>=2.2.0)"]
 xml = ["lxml (>=4.9.2)"]
 
+[[package]]
+name = "pandocfilters"
+version = "1.5.1"
+description = "Utilities for writing pandoc filters in python"
+optional = false
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+files = [
+    {file = "pandocfilters-1.5.1-py2.py3-none-any.whl", hash = "sha256:93be382804a9cdb0a7267585f157e5d1731bbe5545a85b268d6f5fe6232de2bc"},
+    {file = "pandocfilters-1.5.1.tar.gz", hash = "sha256:002b4a555ee4ebc03f8b66307e287fa492e4a77b4ea14d3f934328297bb4939e"},
+]
+
 [[package]]
 name = "parso"
 version = "0.8.7"
@@ -2599,22 +2767,18 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyproject-api"
-version = "1.8.0"
+version = "1.11.2"
 description = "API to interact with the python pyproject.toml based projects"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 files = [
-    {file = "pyproject_api-1.8.0-py3-none-any.whl", hash = "sha256:3d7d347a047afe796fd5d1885b1e391ba29be7169bd2f102fcd378f04273d228"},
-    {file = "pyproject_api-1.8.0.tar.gz", hash = "sha256:77b8049f2feb5d33eefcc21b57f1e279636277a8ac8ad6b5871037b243778496"},
+    {file = "pyproject_api-1.11.2-py3-none-any.whl", hash = "sha256:69040bb421a3d502217bf9d5f92a94e65e1db3fe25b641d6064b2b5b9880428b"},
+    {file = "pyproject_api-1.11.2.tar.gz", hash = "sha256:7bff8690a101f5f0bac3221475d214018f196ae5eea3af9c9879f4d682a3fd60"},
 ]
 
 [package.dependencies]
-packaging = ">=24.1"
-tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
-
-[package.extras]
-docs = ["furo (>=2024.8.6)", "sphinx-autodoc-typehints (>=2.4.1)"]
-testing = ["covdefaults (>=2.3)", "pytest (>=8.3.3)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "setuptools (>=75.1)"]
+packaging = ">=25"
+tomli = {version = ">=2.3", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "pyreadline3"
@@ -2669,22 +2833,17 @@ six = ">=1.5"
 
 [[package]]
 name = "python-discovery"
-version = "1.2.0"
+version = "1.6.1"
 description = "Python interpreter discovery"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "python_discovery-1.2.0-py3-none-any.whl", hash = "sha256:1e108f1bbe2ed0ef089823d28805d5ad32be8e734b86a5f212bf89b71c266e4a"},
-    {file = "python_discovery-1.2.0.tar.gz", hash = "sha256:7d33e350704818b09e3da2bd419d37e21e7c30db6e0977bb438916e06b41b5b1"},
+    {file = "python_discovery-1.6.1-py3-none-any.whl", hash = "sha256:d43fcdef879fe795352bd13ccf8d185ba5a9f86f36cfcd00529f596e737442b3"},
+    {file = "python_discovery-1.6.1.tar.gz", hash = "sha256:cf87d3627dfb4412437fdd5b13eae402607722998d21567993aedbc59b23c15e"},
 ]
 
 [package.dependencies]
 filelock = ">=3.15.4"
-platformdirs = ">=4.3.6,<5"
-
-[package.extras]
-docs = ["furo (>=2025.12.19)", "sphinx (>=9.1)", "sphinx-autodoc-typehints (>=3.6.3)", "sphinxcontrib-mermaid (>=2)"]
-testing = ["covdefaults (>=2.3)", "coverage (>=7.5.4)", "pytest (>=8.3.5)", "pytest-mock (>=3.14)", "setuptools (>=75.1)"]
 
 [[package]]
 name = "python-dotenv"
@@ -2938,6 +3097,22 @@ files = [
 [package.dependencies]
 cffi = {version = "*", markers = "implementation_name == \"pypy\""}
 
+[[package]]
+name = "referencing"
+version = "0.37.0"
+description = "JSON Referencing + Python"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "referencing-0.37.0-py3-none-any.whl", hash = "sha256:381329a9f99628c9069361716891d34ad94af76e461dcb0335825aecc7692231"},
+    {file = "referencing-0.37.0.tar.gz", hash = "sha256:44aefc3142c5b842538163acb373e24cce6632bd54bdb01b21ad5863489f50d8"},
+]
+
+[package.dependencies]
+attrs = ">=22.2.0"
+rpds-py = ">=0.7.0"
+typing-extensions = {version = ">=4.4.0", markers = "python_version < \"3.13\""}
+
 [[package]]
 name = "requests"
 version = "2.32.5"
@@ -2959,6 +3134,130 @@ urllib3 = ">=1.21.1,<3"
 socks = ["PySocks (>=1.5.6,!=1.5.7)"]
 use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 
+[[package]]
+name = "rpds-py"
+version = "0.30.0"
+description = "Python bindings to Rust's persistent data structures (rpds)"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "rpds_py-0.30.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:679ae98e00c0e8d68a7fda324e16b90fd5260945b45d3b824c892cec9eea3288"},
+    {file = "rpds_py-0.30.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4cc2206b76b4f576934f0ed374b10d7ca5f457858b157ca52064bdfc26b9fc00"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:389a2d49eded1896c3d48b0136ead37c48e221b391c052fba3f4055c367f60a6"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:32c8528634e1bf7121f3de08fa85b138f4e0dc47657866630611b03967f041d7"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:f207f69853edd6f6700b86efb84999651baf3789e78a466431df1331608e5324"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:67b02ec25ba7a9e8fa74c63b6ca44cf5707f2fbfadae3ee8e7494297d56aa9df"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:0c0e95f6819a19965ff420f65578bacb0b00f251fefe2c8b23347c37174271f3"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_31_riscv64.whl", hash = "sha256:a452763cc5198f2f98898eb98f7569649fe5da666c2dc6b5ddb10fde5a574221"},
+    {file = "rpds_py-0.30.0-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:e0b65193a413ccc930671c55153a03ee57cecb49e6227204b04fae512eb657a7"},
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+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-macosx_10_12_x86_64.whl", hash = "sha256:c2262bdba0ad4fc6fb5545660673925c2d2a5d9e2e0fb603aad545427be0fc58"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-macosx_11_0_arm64.whl", hash = "sha256:ee6af14263f25eedc3bb918a3c04245106a42dfd4f5c2285ea6f997b1fc3f89a"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3adbb8179ce342d235c31ab8ec511e66c73faa27a47e076ccc92421add53e2bb"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_17_armv7l.manylinux2014_armv7l.whl", hash = "sha256:250fa00e9543ac9b97ac258bd37367ff5256666122c2d0f2bc97577c60a1818c"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:9854cf4f488b3d57b9aaeb105f06d78e5529d3145b1e4a41750167e8c213c6d3"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:993914b8e560023bc0a8bf742c5f303551992dcb85e247b1e5c7f4a7d145bda5"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:58edca431fb9b29950807e301826586e5bbf24163677732429770a697ffe6738"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_31_riscv64.whl", hash = "sha256:dea5b552272a944763b34394d04577cf0f9bd013207bc32323b5a89a53cf9c2f"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-manylinux_2_5_i686.manylinux1_i686.whl", hash = "sha256:ba3af48635eb83d03f6c9735dfb21785303e73d22ad03d489e88adae6eab8877"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-musllinux_1_2_aarch64.whl", hash = "sha256:dff13836529b921e22f15cb099751209a60009731a68519630a24d61f0b1b30a"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-musllinux_1_2_i686.whl", hash = "sha256:1b151685b23929ab7beec71080a8889d4d6d9fa9a983d213f07121205d48e2c4"},
+    {file = "rpds_py-0.30.0-pp311-pypy311_pp73-musllinux_1_2_x86_64.whl", hash = "sha256:ac37f9f516c51e5753f27dfdef11a88330f04de2d564be3991384b2f3535d02e"},
+    {file = "rpds_py-0.30.0.tar.gz", hash = "sha256:dd8ff7cf90014af0c0f787eea34794ebf6415242ee1d6fa91eaba725cc441e84"},
+]
+
 [[package]]
 name = "six"
 version = "1.17.0"
@@ -3379,6 +3678,24 @@ files = [
     {file = "text_unidecode-1.3-py2.py3-none-any.whl", hash = "sha256:1311f10e8b895935241623731c2ba64f4c455287888b18189350b67134a822e8"},
 ]
 
+[[package]]
+name = "tinycss2"
+version = "1.5.1"
+description = "A tiny CSS parser"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "tinycss2-1.5.1-py3-none-any.whl", hash = "sha256:3415ba0f5839c062696996998176c4a3751d18b7edaaeeb658c9ce21ec150661"},
+    {file = "tinycss2-1.5.1.tar.gz", hash = "sha256:d339d2b616ba90ccce58da8495a78f46e55d4d25f9fd71dfd526f07e7d53f957"},
+]
+
+[package.dependencies]
+webencodings = ">=0.4"
+
+[package.extras]
+doc = ["furo", "sphinx"]
+test = ["pytest", "ruff"]
+
 [[package]]
 name = "toml"
 version = "0.10.2"
@@ -3446,6 +3763,17 @@ files = [
     {file = "tomli-2.4.0.tar.gz", hash = "sha256:aa89c3f6c277dd275d8e243ad24f3b5e701491a860d5121f2cdd399fbb31fc9c"},
 ]
 
+[[package]]
+name = "tomli-w"
+version = "1.2.0"
+description = "A lil' TOML writer"
+optional = false
+python-versions = ">=3.9"
+files = [
+    {file = "tomli_w-1.2.0-py3-none-any.whl", hash = "sha256:188306098d013b691fcadc011abd66727d3c414c571bb01b1a174ba8c983cf90"},
+    {file = "tomli_w-1.2.0.tar.gz", hash = "sha256:2dd14fac5a47c27be9cd4c976af5a12d87fb1f0b4512f81d69cce3b35ae25021"},
+]
+
 [[package]]
 name = "tomlkit"
 version = "0.14.0"
@@ -3478,30 +3806,32 @@ files = [
 
 [[package]]
 name = "tox"
-version = "4.23.2"
+version = "4.61.5"
 description = "tox is a generic virtualenv management and test command line tool"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.10"
 files = [
-    {file = "tox-4.23.2-py3-none-any.whl", hash = "sha256:452bc32bb031f2282881a2118923176445bac783ab97c874b8770ab4c3b76c38"},
-    {file = "tox-4.23.2.tar.gz", hash = "sha256:86075e00e555df6e82e74cfc333917f91ecb47ffbc868dcafbd2672e332f4a2c"},
+    {file = "tox-4.61.5-py3-none-any.whl", hash = "sha256:5f9b109fa0a60b7ccb812e8dacbcf7a06b9a633fa90ae97198334b3464b2f133"},
+    {file = "tox-4.61.5.tar.gz", hash = "sha256:d1f535a6ca4827c087e0a2a173dd74621d6e1688c740c8dd44e0377480020431"},
 ]
 
 [package.dependencies]
-cachetools = ">=5.5"
-chardet = ">=5.2"
+cachetools = ">=7.0.3"
 colorama = ">=0.4.6"
-filelock = ">=3.16.1"
-packaging = ">=24.1"
-platformdirs = ">=4.3.6"
-pluggy = ">=1.5"
-pyproject-api = ">=1.8"
-tomli = {version = ">=2.0.1", markers = "python_version < \"3.11\""}
-typing-extensions = {version = ">=4.12.2", markers = "python_version < \"3.11\""}
-virtualenv = ">=20.26.6"
+filelock = ">=3.25"
+packaging = ">=26"
+platformdirs = ">=4.9.4"
+pluggy = ">=1.6"
+pyproject-api = ">=1.10"
+python-discovery = ">=1.4.4"
+tomli = {version = ">=2.4", markers = "python_version < \"3.11\""}
+tomli-w = ">=1.2"
+typing-extensions = {version = ">=4.15", markers = "python_version < \"3.13\""}
+virtualenv = ">=21.1"
 
 [package.extras]
-test = ["devpi-process (>=1.0.2)", "pytest (>=8.3.3)", "pytest-mock (>=3.14)"]
+completion = ["argcomplete (>=3.6.3)"]
+testing = ["devpi-process (>=1.1.1)", "pytest (>=9.0.2)", "pytest-mock (>=3.15.1)"]
 
 [[package]]
 name = "tqdm"
@@ -3605,20 +3935,20 @@ zstd = ["backports-zstd (>=1.0.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "21.2.0"
+version = "21.7.14"
 description = "Virtual Python Environment builder"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 files = [
-    {file = "virtualenv-21.2.0-py3-none-any.whl", hash = "sha256:1bd755b504931164a5a496d217c014d098426cddc79363ad66ac78125f9d908f"},
-    {file = "virtualenv-21.2.0.tar.gz", hash = "sha256:1720dc3a62ef5b443092e3f499228599045d7fea4c79199770499df8becf9098"},
+    {file = "virtualenv-21.7.14-py3-none-any.whl", hash = "sha256:ac2b2b3755da16aed6302de00ecd0cc43ecc0f295c3f84c064969cd70869ba05"},
+    {file = "virtualenv-21.7.14.tar.gz", hash = "sha256:6f14bcaeb6c3438cd8c8cf3ab1805973592fb900e9b724427d1102aaa3db7fbb"},
 ]
 
 [package.dependencies]
 distlib = ">=0.3.7,<1"
 filelock = {version = ">=3.24.2,<4", markers = "python_version >= \"3.10\""}
 platformdirs = ">=3.9.1,<5"
-python-discovery = ">=1"
+python-discovery = ">=1.6"
 typing-extensions = {version = ">=4.13.2", markers = "python_version < \"3.11\""}
 
 [[package]]
@@ -3632,6 +3962,21 @@ files = [
     {file = "wcwidth-0.8.3.tar.gz", hash = "sha256:d128512515fbf4612e0ff21fd6380399210318b7b54a9af59dff8454cf9730eb"},
 ]
 
+[[package]]
+name = "webencodings"
+version = "0.6.1"
+description = "Character encoding aliases for legacy web content"
+optional = false
+python-versions = ">=3.10"
+files = [
+    {file = "webencodings-0.6.1-py3-none-any.whl", hash = "sha256:7fab6269c8bf237c657876b52058ccb182e861518d1c695c1a9aaa8c1c105d5b"},
+    {file = "webencodings-0.6.1.tar.gz", hash = "sha256:565f9ad031c702dae404e27a099e3e09186a3ab1b9520f06d215502b651fd910"},
+]
+
+[package.extras]
+doc = ["furo", "sphinx"]
+test = ["pytest", "ruff"]
+
 [[package]]
 name = "wrapt"
 version = "2.1.2"
@@ -3737,4 +4082,4 @@ dev = ["pytest", "setuptools"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.10"
-content-hash = "d9b3b38c59097c8cc941a2f070514d01c484da045172bfb80c9a5a548686f050"
+content-hash = "5579fddf9da46571e370590cc36c8ff3762c83f9eb7cd020471fde6a111b2b5d"
diff --git a/pyproject.toml b/pyproject.toml
index d6efbe8..2dac862 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,7 +13,7 @@ biofilter = "biofilter.api.cli.main:main"
 [tool.poetry.dependencies]
 python = "^3.10"
 click = "8.1.7"
-packaging = "24.1"
+packaging = ">=24.1"
 colorama = "^0.4.6"
 tqdm = "^4.67.1"
 sqlalchemy = "^2.0.37"
@@ -36,7 +36,7 @@ coverage = "^7.6.8"
 pytest = "^8.3.4"
 sphinx = "^8.1.3"
 sphinx-rtd-theme = "^3.0.2"
-tox = "^4.23.2"
+tox = "^4.61.5"
 sphinx-material = "^0.0.36"
 pylint = "^3.3.3"
 myst-parser = "^4.0.1"
@@ -44,10 +44,11 @@ linkify-it-py = "^2.0.3"
 testcontainers = "^4.14.1"
 sphinxcontrib-mermaid = "^2.0.1"
 ipykernel = "^7.3.0"
+nbconvert = "^7.17.1"
 
 [build-system]
 requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.tox]
-envlist = "py310,py311,py312"
+envlist = "py310,py311,py312,py313"
diff --git a/tox.ini b/tox.ini
index aa488c7..8175ba0 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,27 +1,27 @@
 [tox]
-envlist = py310, py311, py312
+envlist = py310, py311, py312, py313
 
-# Define the test environment for each Python version
-# Replace the path with the path to your Python version
-# You can find the path to your Python version by running `which python`
+# tox builds the package with poetry-core and installs it together with the
+# runtime dependencies resolved from pyproject.toml, so the envs only need the
+# test-only extras on top. Do not add `poetry install` back here: it is
+# redundant, and poetry sharing an env with the package under test makes the
+# two compete over common dependencies such as `packaging`.
+
+[testenv]
+deps = pytest
+commands = pytest {posargs:tests/}
+
+# basepython is pinned per interpreter because the 3.10-3.12 builds come from
+# pyenv and 3.13 from Homebrew; adjust the paths for your own machine.
 
 [testenv:py310]
 basepython = /Users/andrerico/.pyenv/versions/3.10.3/bin/python
-deps = poetry
-commands =
-    poetry install --no-root
-    pytest tests/
 
 [testenv:py311]
 basepython = /Users/andrerico/.pyenv/versions/3.11.9/bin/python
-deps = poetry
-commands =
-    poetry install --no-root
-    pytest tests/
 
 [testenv:py312]
 basepython = /Users/andrerico/.pyenv/versions/3.12.3/bin/python
-deps = poetry
-commands =
-    poetry install --no-root
-    pytest tests/
+
+[testenv:py313]
+basepython = /opt/homebrew/bin/python3.13