diff --git a/.github/workflows/inspect-r-api-update.yml b/.github/workflows/inspect-r-api-update.yml index af975d77..dbe20dee 100644 --- a/.github/workflows/inspect-r-api-update.yml +++ b/.github/workflows/inspect-r-api-update.yml @@ -36,7 +36,8 @@ concurrency: jobs: regenerate-cache: - runs-on: ubuntu-latest + # The parity oracle's operating system (docs/parity.md): Ubuntu 24.04. + runs-on: ubuntu-24.04 env: RGL_USE_NULL: 'true' R_KEEP_PKG_SOURCE: 'yes' @@ -119,11 +120,46 @@ jobs: with: python-version: '3.11' - - name: Set up R - uses: r-lib/actions/setup-r@v2 - with: - r-version: release - use-public-rspm: true + # The committed cache is R's output under the environment docs/parity.md + # pins: CRAN's R 4.5.0 build for Ubuntu 24.04, the reference BLAS and + # LAPACK, and Ubuntu's Rcpp, RcppParallel and jsonlite. The current R + # release or OpenBLAS (what setup-r installs) moves some results, so a + # cache generated under them cannot pass the port's exact parity tests. + - name: Set up R 4.5.0 as the parity oracle runs it + shell: bash + run: | + set -euo pipefail + sudo apt-get update + sudo apt-get install -y --no-install-recommends ca-certificates wget + wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc \ + | sudo tee /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc > /dev/null + echo "deb https://cloud.r-project.org/bin/linux/ubuntu noble-cran40/" \ + | sudo tee /etc/apt/sources.list.d/cran-r.list > /dev/null + sudo apt-get update + sudo apt-get install -y --no-install-recommends --allow-downgrades \ + r-base-core=4.5.0-3.2404.0 r-base-dev=4.5.0-3.2404.0 \ + libblas3 liblapack3 r-cran-rcpp r-cran-rcppparallel r-cran-jsonlite + sudo apt-mark hold r-base-core r-base-dev + sudo update-alternatives --set libblas.so.3-x86_64-linux-gnu \ + /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 + sudo update-alternatives --set liblapack.so.3-x86_64-linux-gnu \ + /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 + mkdir -p "${RUNNER_TEMP}/R-library" + echo "R_LIBS_USER=${RUNNER_TEMP}/R-library" >> "${GITHUB_ENV}" + + - name: Confirm the oracle environment + shell: bash + run: | + set -euo pipefail + Rscript -e ' + si <- sessionInfo() + cat(R.version.string, "\nBLAS: ", si$BLAS, "\nLAPACK:", si$LAPACK, "\n") + for (p in c("Rcpp", "RcppParallel", "jsonlite")) cat(p, format(packageVersion(p)), "\n") + stopifnot( + identical(paste(R.version$major, R.version$minor, sep = "."), "4.5.0"), + grepl("/blas/libblas[.]so", si$BLAS), + grepl("/lapack/liblapack[.]so", si$LAPACK) + )' - name: Install Linux system dependencies shell: bash @@ -158,7 +194,8 @@ jobs: shell: bash run: | set -euo pipefail - Rscript -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages(c('remotes','jsonlite','mlbench')); remotes::install_deps('upstream/package', dependencies=NA, upgrade='never')" + # jsonlite, Rcpp and RcppParallel stay at the Ubuntu builds installed above. + Rscript -e "options(repos=c(CRAN='https://cloud.r-project.org')); install.packages(c('remotes','mlbench')); remotes::install_deps('upstream/package', dependencies=NA, upgrade='never')" - name: Install exact NNS source package shell: bash @@ -183,7 +220,8 @@ jobs: shell: bash run: | set -o pipefail - python scripts/regenerate_r_cache.py --fresh --allow-ci 2>&1 | tee parity-regeneration.log + # tests/invariants also reads the cache, so its entries are regenerated too. + python scripts/regenerate_r_cache.py --fresh --allow-ci -- tests/parity tests/invariants 2>&1 | tee parity-regeneration.log - name: Confirm generated cache version if: always() @@ -231,8 +269,10 @@ jobs: env: R_COMMIT: ${{ steps.package.outputs.r_commit }} R_VERSION: ${{ steps.package.outputs.r_version }} + SOURCE_TARBALL: ${{ steps.package.outputs.source_tarball }} run: | python - <<'PY' + import hashlib import json import os from pathlib import Path @@ -241,6 +281,13 @@ jobs: manifest = json.loads(path.read_text(encoding='utf-8')) manifest['r_commit'] = os.environ['R_COMMIT'] manifest['r_version'] = os.environ['R_VERSION'] + tarball = Path('upstream') / os.environ['SOURCE_TARBALL'] + if tarball.is_file(): + manifest['r_source_archive'] = { + 'filename': tarball.name, + 'sha256': hashlib.sha256(tarball.read_bytes()).hexdigest(), + 'repository_commit': os.environ['R_COMMIT'], + } path.write_text(json.dumps(manifest, indent=2) + '\n', encoding='utf-8') print(f"Manifest now records {manifest['r_repo']}@{manifest['r_commit']} " f"(NNS {manifest['r_version']}).") diff --git a/.github/workflows/r14-reproduction.yml b/.github/workflows/r14-reproduction.yml new file mode 100644 index 00000000..be0e678f --- /dev/null +++ b/.github/workflows/r14-reproduction.yml @@ -0,0 +1,72 @@ +name: R14 parity reproduction bundle + +on: + workflow_dispatch: + push: + branches: [automation/r14-stack-cache-20261106] + paths: [.github/workflows/r14-reproduction.yml] + +permissions: + contents: read + +jobs: + bundle: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + - uses: actions/setup-python@v5 + with: + python-version: '3.13' + - name: Archive tracked source and pinned R package + shell: bash + run: | + set -euo pipefail + mkdir -p reproduction/wheels + git archive --format=tar.gz --output=reproduction/python-source.tar.gz HEAD + git rev-parse HEAD > reproduction/python-commit.txt + curl --fail --location --retry 3 \ + https://raw.githubusercontent.com/OVVO-Financial/NNS/9c8bd21a77b377cb49d43fececc662d62b00a94e/NNS_14.0.tar.gz \ + --output reproduction/NNS_14.0.tar.gz + sha256sum reproduction/*.tar.gz > reproduction/SHA256SUMS + python -m pip download --only-binary=:all: --dest reproduction/wheels \ + hypothesis pytest-benchmark pytest-xdist nanobind scikit-build-core ruff mypy + - uses: actions/upload-artifact@v4 + with: + name: r14-reproduction-source + path: reproduction/ + retention-days: 7 + if-no-files-found: error + + oracle-runtime: + runs-on: ubuntu-latest + container: debian:trixie + steps: + - name: Build exact R source oracle + shell: bash + run: | + set -euo pipefail + apt-get update -qq + DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \ + ca-certificates curl r-base-core r-base-dev r-cran-rcpp \ + r-cran-rcppparallel r-cran-jsonlite r-cran-mass r-cran-mlbench + curl --fail --location --retry 3 \ + https://raw.githubusercontent.com/OVVO-Financial/NNS/9c8bd21a77b377cb49d43fececc662d62b00a94e/NNS_14.0.tar.gz \ + --output /tmp/NNS_14.0.tar.gz + echo '754dad65629b95bf3ddca9bf9018ef197f5c346dd12dcfb49e505835920bc5cb /tmp/NNS_14.0.tar.gz' | sha256sum -c - + MAKEFLAGS=-j2 R CMD INSTALL /tmp/NNS_14.0.tar.gz + mkdir -p oracle-runtime/dependent-libraries + Rscript -e 'library(NNS); stopifnot(packageVersion("NNS") == "14.0"); sessionInfo()' > oracle-runtime/session-info.txt + find /usr/lib/R /usr/local/lib/R -name '*.so' -print0 | \ + xargs -0 -r ldd 2>/dev/null | awk '/=> \/.* \(/{print $3}' | sort -u > oracle-runtime/library-paths.txt + while IFS= read -r lib; do + cp -L "${lib}" oracle-runtime/dependent-libraries/ + done < oracle-runtime/library-paths.txt + tar -h -C / -czf oracle-runtime/r14-runtime.tar.gz \ + usr/bin/R usr/bin/Rscript usr/lib/R usr/share/R etc/R usr/local/lib/R + sha256sum oracle-runtime/r14-runtime.tar.gz > oracle-runtime/SHA256SUMS + - uses: actions/upload-artifact@v4 + with: + name: r14-executable-oracle-debian13 + path: oracle-runtime/ + retention-days: 7 + if-no-files-found: error diff --git a/.github/workflows/workflow-baseline.yml b/.github/workflows/workflow-baseline.yml index ffdc8d06..bc3e89e0 100644 --- a/.github/workflows/workflow-baseline.yml +++ b/.github/workflows/workflow-baseline.yml @@ -53,6 +53,7 @@ jobs: ".github/workflows/docs.yml" ".github/workflows/release.yml" ".github/workflows/sync-from-nns-core.yml" + ".github/workflows/r14-reproduction.yml" ) mkdir -p .github/workflows @@ -75,7 +76,8 @@ jobs: ".github/workflows/inspect-r-api-update.yml"|\ ".github/workflows/docs.yml"|\ ".github/workflows/release.yml"|\ - ".github/workflows/sync-from-nns-core.yml") + ".github/workflows/sync-from-nns-core.yml"|\ + ".github/workflows/r14-reproduction.yml") ;; *) echo "Removing non-baseline workflow: ${path}" diff --git a/README.md b/README.md index 5e2ffb69..539bcaad 100644 --- a/README.md +++ b/README.md @@ -29,7 +29,7 @@ native and does not call R at runtime. |---|---| | Distribution package | `ovvo-nns` | | Import package | `nns` | -| Current version | `2.2.0` | +| Current version | `2.3.0` | | Python | `>=3.11` | | Required runtime dependencies | NumPy, SciPy, Matplotlib | | R required at runtime | No | diff --git a/docs/parity.md b/docs/parity.md index d737b246..40d082ad 100644 --- a/docs/parity.md +++ b/docs/parity.md @@ -3,9 +3,10 @@ ## Target and status R NNS 14.0 is the parity target: the source at -`OVVO-Financial/NNS@7b07a837c130ba7220dbe16c584221508757d5ae` +`OVVO-Financial/NNS@9c8bd21a77b377cb49d43fececc662d62b00a94e` (`NNS_14.0.tar.gz`, SHA256 -`5060f6ec426c889501740bf8a585d41f37a746554cb6fdf81f301ca41232cd5b`). Every shard +`754dad65629b95bf3ddca9bf9018ef197f5c346dd12dcfb49e505835920bc5cb`; the same +archive is still committed at the R repository's later `de5d4fe`). Every shard in `tests/_r_cache/` is stamped `nns_version` `14.0`. NNS-core remains the native C++ foundation; R 14 kernels it does not carry enter as hashed overlays recorded in `sync/nns_source.json`. @@ -58,6 +59,8 @@ without the native extension: | Stochastic dominance (`NNS.FSD`/`SSD`/`TSD`, `.uni`, `NNS.SD.cluster`, `NNS.SD.efficient.set`) | 2,583 | | `NNS.meboot`, `NNS.MC`, `NNS.SS` and ARMA intervals under `set.seed` | 502 | | Permutation p-values (`NNS.seas`, `NNS.dep`, `NNS.caus`) | 198 | +| Multivariate `NNS.reg` predictions on 900-1,500 rows (every distance, `n.best`, tied coordinates) | 84 | +| Paths compiled in the 14.0 update: integer-degree `LPM.VaR`/`UPM.VaR`, `NNS.copula`, `NNS.dep` matrices, classification predictions, mixed `dy.d_` | 110 | The `*_r14.py` parity tests pin these results with exact cache entries. @@ -88,16 +91,16 @@ python -m build # packaging check ## Installing the R NNS 14.0 oracle -Install the pinned R 14.0 source package, never the CRAN release, as the -`r14-reproduction` workflow does: +Install the pinned R 14.0 source package, never the CRAN release, into R 4.5.0 +(see the scope note under Bit-level parity): ```bash curl --fail --location -o NNS_14.0.tar.gz \ - https://raw.githubusercontent.com/OVVO-Financial/NNS/7b07a837c130ba7220dbe16c584221508757d5ae/NNS_14.0.tar.gz + https://raw.githubusercontent.com/OVVO-Financial/NNS/9c8bd21a77b377cb49d43fececc662d62b00a94e/NNS_14.0.tar.gz ``` ```bash -echo '5060f6ec426c889501740bf8a585d41f37a746554cb6fdf81f301ca41232cd5b NNS_14.0.tar.gz' | sha256sum -c - +echo '754dad65629b95bf3ddca9bf9018ef197f5c346dd12dcfb49e505835920bc5cb NNS_14.0.tar.gz' | sha256sum -c - ``` ```bash @@ -150,6 +153,13 @@ package and point `R_LIBS` at its library when regenerating (`R_LIBS= python scripts/regenerate_r_cache.py ...`). The earlier shards, generated from a patched R 13.3, have all been regenerated from R 14.0. +The R 14.0 update of 13 November 2026 (`9c8bd21`) moved interpreted loops into +compiled code. Regenerating every shard from it under R 4.5.0 changed no value +that the earlier 14.0 build (`7b07a83`) returns: the 37 entries that differ +from the previous cache reproduce identically on both builds, so they had been +written by another R installation (an R that evaluates `x^3` as `x * x * x`, +for one). Generate the cache with R 4.5.0, as the scope note above requires. + ## Automated parity check (with deferred autofix agent) `NNS-python` automates R-behavior fidelity detection. The automated **fixing diff --git a/pyproject.toml b/pyproject.toml index 3c3b9b60..d31d9368 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "ovvo-nns" -version = "2.2.0" +version = "2.3.0" description = "Python port of nonlinear nonparametric statistics from R NNS" readme = "README.md" requires-python = ">=3.11" diff --git a/src/nns/__init__.py b/src/nns/__init__.py index 85752921..b923e810 100644 --- a/src/nns/__init__.py +++ b/src/nns/__init__.py @@ -4,7 +4,7 @@ from nns.pm_matrix import pm_matrix as pm_matrix -__version__ = "2.2.0" +__version__ = "2.3.0" _EXPORTS = { "BoostResult": ("nns.boost", "BoostResult"), diff --git a/sync/nns_source.json b/sync/nns_source.json index 1583f1ca..feacd961 100644 --- a/sync/nns_source.json +++ b/sync/nns_source.json @@ -1,6 +1,6 @@ { "r_repo": "OVVO-Financial/NNS", - "r_commit": "7b07a837c130ba7220dbe16c584221508757d5ae", + "r_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e", "r_version": "14.0", "r_src_tree_hash": "1c82fa36a4af3ce6359cc34b3d841afa6bdd1815", "core_repo": "OVVO-Financial/NNS-core", @@ -11,11 +11,11 @@ "vendored_r_path": "tools/NNS", "vendored_r_tarball": "tools/NNS_13.0.tar.gz", "r_cache_path": "tests/_r_cache", - "notes": "Behavioral oracle: the exact R14 archive and commit recorded above. The cumulative Python implementation through PR #189 is preserved under draft #192. Native R14 overlays are explicit and hashed separately; extern/NNS-core remains byte-for-byte at the recorded accepted vendor revision. The vendored tools/NNS snapshot, r_src_tree_hash, and tools/NNS_13.0.tar.gz retain their historical lineage and do not identify the live R14 behavioral oracle. Local verification results are recorded in docs/R14_LOCAL_PARITY_REPAIR.md; remote CI/release approval is separate.", + "notes": "Behavioral oracle: the exact R14 archive and commit recorded above. The cumulative Python implementation through PR #189 is preserved under draft #192. Native R14 overlays are explicit and hashed separately; extern/NNS-core remains byte-for-byte at the recorded accepted vendor revision. The vendored tools/NNS snapshot, r_src_tree_hash, and tools/NNS_13.0.tar.gz retain their historical lineage and do not identify the live R14 behavioral oracle. Local verification results are recorded in docs/R14_LOCAL_PARITY_REPAIR.md; remote CI/release approval is separate. The R 14.0 update at 9c8bd21 (compiled speed paths; the same archive through de5d4fe) returns the same values as 7b07a837 on every cached input, so overlays ported from 7b07a837 keep that source and record the oracle they were verified against in verified_r_commit.", "r_source_archive": { "filename": "NNS_14.0.tar.gz", - "sha256": "5060f6ec426c889501740bf8a585d41f37a746554cb6fdf81f301ca41232cd5b", - "repository_commit": "7b07a837c130ba7220dbe16c584221508757d5ae" + "sha256": "754dad65629b95bf3ddca9bf9018ef197f5c346dd12dcfb49e505835920bc5cb", + "repository_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e" }, "r14_native_overlays": [ { @@ -24,7 +24,8 @@ "r_source_path": "src/central_tendencies.cpp", "r_source_sha256": "f50530afc3f94e8c7faef14f59bd44bacf64e7a21bd5c2e8b9421404a82bd61d", "r_source_commit": "7b07a837c130ba7220dbe16c584221508757d5ae", - "adaptation": "R14 gravity/mode port with std::vector marshalling. CMake replaces only the old central-tendency translation unit; vendor rescale behavior is retained." + "adaptation": "R14 gravity/mode port with std::vector marshalling. CMake replaces only the old central-tendency translation unit; vendor rescale behavior is retained.", + "verified_r_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e" }, { "path": "src/nns/_r14_dependence.hpp", @@ -32,7 +33,8 @@ "r_source_path": "src/NNS_dep.cpp", "r_source_sha256": "2e577f57165fd38d779dcde369eabf4800135eb50e07079069c11be2fedaa115", "r_source_commit": "7b07a837c130ba7220dbe16c584221508757d5ae", - "adaptation": "R14 multilevel/null-corrected dependence with vector marshalling. R::dhyper and R::pnorm are the ports of R's own nmath routines in src/nns/_rnmath.hpp, so the null expectations match R's bit for bit. Bound explicitly instead of the untouched vendor dependence estimator." + "adaptation": "R14 multilevel/null-corrected dependence with vector marshalling. R::dhyper and R::pnorm are the ports of R's own nmath routines in src/nns/_rnmath.hpp, so the null expectations match R's bit for bit. Bound explicitly instead of the untouched vendor dependence estimator.", + "verified_r_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e" }, { "path": "src/nns/_r14_mreg_predict.cpp", @@ -40,22 +42,24 @@ "r_source_path": "src/NNS_mreg_predict.cpp", "r_source_sha256": "e0fac52e99f33cd29fbb07b51711ded56c016d9e1a4b4a8eac8a9b4b9ed98571", "r_source_commit": "7b07a837c130ba7220dbe16c584221508757d5ae", - "adaptation": "The vendored NNS-core multivariate prediction kernel (src/mreg_predict.cpp, sha256 c98d3fbb93c3165109870cb3d2cc1a55c8cb0fa35770b3ff0204441fd20e1e04) with its Student-t and normal ensemble weights evaluated by R's own nmath dt and dnorm4 (src/nns/_rnmath.hpp) instead of the vendor's lgamma-based closed form, so the weights and predictions match R's NNS_mreg_predict_v2_cpp bit for bit. CMake replaces only the vendor translation unit." + "adaptation": "The vendored NNS-core multivariate prediction kernel (src/mreg_predict.cpp, sha256 c98d3fbb93c3165109870cb3d2cc1a55c8cb0fa35770b3ff0204441fd20e1e04) with its Student-t and normal ensemble weights evaluated by R's own nmath dt and dnorm4 (src/nns/_rnmath.hpp) instead of the vendor's lgamma-based closed form, so the weights and predictions match R's NNS_mreg_predict_v2_cpp bit for bit. CMake replaces only the vendor translation unit.", + "verified_r_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e" }, { "path": "src/nns/_r14_seas.cpp", "sha256": "2b956af7f064a575d1acd1283ec5a6f4ced8e91b227e294634ce3ab7fd83420e", "r_source_path": "src/NNS_seas.cpp", "r_source_sha256": "cf950b8e1b92bc942c132135dfb6a4909ca9f77c60da186e23eac0d30b2ed23e", - "r_source_commit": "7b07a837c130ba7220dbe16c584221508757d5ae", - "adaptation": "R14 NNS.seas lag scan: SeasComponent and seas_score copied verbatim, scored across lags with nns::parallel_for in place of RcppParallel (each lag writes its own slot, so results never depend on the thread count). Built into the NNS-core library target for its Release optimisation; bound as seas_scores_r14." + "r_source_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e", + "adaptation": "R14 NNS.seas lag scan: SeasComponent and seas_score copied verbatim, scored across lags with nns::parallel_for in place of RcppParallel (each lag writes its own slot, so results never depend on the thread count). Built into the NNS-core library target for its Release optimisation; bound as seas_scores_r14.", + "verified_r_commit": "9c8bd21a77b377cb49d43fececc662d62b00a94e" } ], "r_cache_summary": { "nns_version": "14.0", - "shards": 80, - "entries": 2764, - "generation": "Pinned live R 14.0 only; no Python-authored expected values." + "shards": 149, + "entries": 2999, + "generation": "Pinned live R NNS 14.0 under R 4.5.0 (x86-64 Linux, reference BLAS/LAPACK) only; no Python-authored expected values." }, "r_nmath_ports": [ { diff --git a/tests/_r_cache/NNS.ARMA.optim.custom.json b/tests/_r_cache/NNS.ARMA.optim.custom.json index 60234e06..7eb9e4f4 100644 --- a/tests/_r_cache/NNS.ARMA.optim.custom.json +++ b/tests/_r_cache/NNS.ARMA.optim.custom.json @@ -998,93 +998,93 @@ "status": "disabled" }, "errors": [ - -49.0090765862131, - -28.7867443667765, - -90.6167378810168, - -78.4997176408742, - -100.433716060959, - -150.417448118352, - -235.218292058735, - -243.994194206841, - -145.823356376895, - -87.7064390579742, - 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-9.48083356439686, - 0.00072094153218153, - 2.99783636669401, - 9.44921597246735 + -9.48083356439352, + 0.000720941532179584, + 2.99783636669405, + 9.44921597247369 ] }, "e86b2ed2d84c410dea9c0d5a324e8dbbd037e281e2964b1ac0fd6a81f5798db3": { @@ -111,7 +111,7 @@ "first.derivative": [ -0.272776505889014, -0.138729310870164, - 0.290099454576275 + 0.290099454576253 ], "second.derivative": [ NaN, diff --git a/tests/_r_cache/labels.reg.factor_design.json b/tests/_r_cache/labels.reg.factor_design.json index 8c7b93ec..ab9d5f21 100644 --- a/tests/_r_cache/labels.reg.factor_design.json +++ b/tests/_r_cache/labels.reg.factor_design.json @@ -1,9 +1,5 @@ { "entries": { - "1f88b8af415d4961bfb57b7da5db0cf9d7b7926d5482e1f52b44f16d8cdc339b": [ - 3.15468459007073, - 3.64986714908955 - ], "6f2410ae49ecbf73493e49ad6238cf2095b9c0ca0cf379ad99c233ce7ff83443": [ 3.15468459007073, 3.64986714908955 diff --git a/tests/_r_cache/labels.reg.factor_x.json b/tests/_r_cache/labels.reg.factor_x.json index 431ff315..f4ab6d0c 100644 --- a/tests/_r_cache/labels.reg.factor_x.json +++ b/tests/_r_cache/labels.reg.factor_x.json @@ -1,20 +1,5 @@ { "entries": { - "78517b76ccc8dd943aa684cbdb8a603b86121e88a7ac158cdeb1c6c01168aa08": { - "names": [ - "wt", - "cyl_eight", - "cyl_four", - "cyl_six", - "y.hat" - ], - "pe": [ - 25.7780283514678, - 20.4224004635143, - 21.7209478619782 - ], - "r2": 0.754354852044081 - }, "897336610f082f086be48ada66fe2ecc9bf999e84b709861dc1cd1e548ce337c": { "names": [ "wt", diff --git a/tests/_r_cache/labels.reg.logical_frame.json b/tests/_r_cache/labels.reg.logical_frame.json index bb6b6acc..6c53c6f1 100644 --- a/tests/_r_cache/labels.reg.logical_frame.json +++ b/tests/_r_cache/labels.reg.logical_frame.json @@ -30,22 +30,6 @@ "hp", "y.hat" ] - }, - "950473a397b2c08f76de81fefdcfde3ca541e998f068adfa84a2216c17dc1e30": { - "pe": [ - 25.8700322952176, - 20.3225882734732, - 19.8264796962739, - 24.2513749170924, - 23.9352072815661 - ], - "r2": 0.700191982762952, - "rpm": [ - "heavy_FALSE.", - "heavy_TRUE.", - "hp", - "y.hat" - ] } }, "label": "labels.reg.logical_frame", diff --git a/tests/invariants/test_r14_shared_paths.py b/tests/invariants/test_r14_shared_paths.py index 10a59ee1..3b4eee51 100644 --- a/tests/invariants/test_r14_shared_paths.py +++ b/tests/invariants/test_r14_shared_paths.py @@ -92,7 +92,10 @@ def test_native_r14_overlays_have_separate_source_provenance() -> None: assert manifest["r_version"] == "14.0" assert len(manifest["r14_native_overlays"]) == 4 for overlay in manifest["r14_native_overlays"]: - assert overlay["r_source_commit"] == manifest["r_commit"] + # Each overlay names the R commit its source was ported from and the + # pinned oracle it was verified against bit for bit. + assert overlay["verified_r_commit"] == manifest["r_commit"] + assert len(overlay["r_source_commit"]) == 40 assert not overlay["path"].startswith("extern/") actual = hashlib.sha256((root / overlay["path"]).read_bytes()).hexdigest() assert actual == overlay["sha256"], overlay["path"] diff --git a/tests/parity/test_diff.py b/tests/parity/test_diff.py index ff623f72..037d342b 100644 --- a/tests/parity/test_diff.py +++ b/tests/parity/test_diff.py @@ -16,6 +16,22 @@ DY_D_PARITY = 5e-2 +def _r_power(x: Any, n: int) -> Any: + """R's ``x^n`` for a whole ``n``: ``R_pow`` (libm ``pow``) for a double, and + ``R_cpow_n``'s repeated squaring for a complex number.""" + if not isinstance(x, complex): + return math.pow(x, n) + out, base = complex(1.0), x + while n > 0: + if n & 1: + out = out * base + if n == 1: + break + n >>= 1 + base = base * base + return out + + @pytest.mark.parity @pytest.mark.parametrize( ("name", "func", "point"), @@ -28,15 +44,16 @@ ("constant", lambda x: 5.0, 2.0), ("identity", lambda x: x, 3.0), ("square", lambda x: x * x, 3.0), - # R uses repeated multiplication for these small integer powers. - # libm pow (Python **) differs by one ulp and changes inferred h. - ("cube", lambda x: x * x * x, 2.0), + # R's x^3 and x^4: libm pow for a double, repeated squaring for a + # complex step. x * x * x can differ by an ulp, and at h near 1e-9 that + # moves the inferred h. + ("cube", lambda x: _r_power(x, 3), 2.0), ("log", np.log, 5.0), # math.tanh is the C library tanh R uses; np.tanh can differ by an ulp, # which changes the bisection path. ("tanh", lambda x: cmath.tanh(x) if isinstance(x, complex) else math.tanh(x), 0.5), ("abs", abs, -1.0), - ("quartic", lambda x: x * x * x * x - 3 * x, -2.0), + ("quartic", lambda x: _r_power(x, 4) - 3 * x, -2.0), ], ) def test_nns_diff_matches_r(name: str, func: Any, point: float) -> None: diff --git a/uv.lock b/uv.lock index 30ee8cbe..943f1c74 100644 --- a/uv.lock +++ b/uv.lock @@ -1167,7 +1167,7 @@ wheels = [ [[package]] name = "ovvo-nns" -version = "2.2.0" +version = "2.3.0" source = { editable = "." } dependencies = [ { name = "matplotlib" },