From be76ec534e71847dac557fed760549a28415d989 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 14:03:04 -0600 Subject: [PATCH 01/19] Add test comment at the end of _quarto.yml --- docs/_quarto.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/_quarto.yml b/docs/_quarto.yml index 34b918a..55539bf 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -35,3 +35,4 @@ format: # Renders ```mermaid blocks as diagrams, as GitHub does filters: - mermaid.lua +#test \ No newline at end of file From dd1ef51286fb31c58495d00f5f5df546826e77e5 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 14:03:30 -0600 Subject: [PATCH 02/19] Remove commented test line from _quarto.yml --- docs/_quarto.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/docs/_quarto.yml b/docs/_quarto.yml index 55539bf..120c63b 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -34,5 +34,4 @@ format: # Renders ```mermaid blocks as diagrams, as GitHub does filters: - - mermaid.lua -#test \ No newline at end of file + - mermaid.lua \ No newline at end of file From 1ca7ad514aa2dbf3f3cf025196f2469f06092870 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 14:56:56 -0600 Subject: [PATCH 03/19] Update README.md to streamline getting started instructions and link to the online guide --- README.md | 56 ++++++------------------------------------------------- 1 file changed, 6 insertions(+), 50 deletions(-) diff --git a/README.md b/README.md index dc4722d..c9b7bea 100644 --- a/README.md +++ b/README.md @@ -162,56 +162,12 @@ taxon-specific v2 behaviour is in ## Getting started -New to the repository? Read -[`docs/getting_started.md`](docs/getting_started.md) first: vocabulary, -running the baseline, reading the outputs, and testing a change. - -### Prerequisites - -R 4.4 or later, and these packages: - -```r -install.packages(c( - "data.table", "arm", "mgcv", "MuMIn", "pROC", # harness, methods - "jsonlite", "ggplot2", # summaries, figures - "xgboost", # xgboost engine - "testthat", "withr" # 1_code/tests/ -)) -``` - -`_setup/03` also needs `foreach`, `AICcmodavg`, `binom`, `mapproj` and -`RcmdrMisc` (v2's functions). `exp_002_soilgrids` also needs `sf`, -`terra` and [sciSpatialR](https://github.com/ABbiodiversity/sciSpatialR). - -Runs need read access to `//ABMI-DATA2/science/sdmMethodsDev/` (ABMI -network or VPN). They read the published test dataset and v2 results -from there, at the versions pinned in -[`1_code/harness/data_source.R`](1_code/harness/data_source.R); nothing -in `_setup/` has to be run. To read another copy, such as a local one, -set `SDM_TEST_DATASET` and `SDM_V2_RESULTS` to its folders. - -### Run the v2 baseline (exp_000) - -From the repository root: - -```r -source("1_code/harness/harness.R") -load_framework() # the harness, every method, every taxon module -list_methods() # engines, selection rules, resampling, metrics -names(standard_specs()) # the runs an experiment can choose - -# Check species, n_bootstraps and workers in run.R first -source("1_code/experiments/exp_000_parity_v2/run.R") -``` - -### Check that a change broke nothing - -```sh -Rscript 1_code/tests/run_tests.R -``` - -Then compare stores at 5 draws with `1_code/tests/compare_stores.R`, as -in [`docs/getting_started.md`](docs/getting_started.md#check-that-nothing-broke). +New to the repository? Work through the +[getting-started guide](https://abbiodiversity.github.io/sdmMethodsDev/getting_started.html): +prerequisites and data access, running the v2 baseline (exp_000), +starting an experiment, adding a taxon module, and checking that a +change broke nothing. Its source is +[`docs/getting_started.md`](docs/getting_started.md). ## Outputs: `2_pipeline/` and `3_output/` From 50616005de396792797943a9d9cc09a8be63f39a Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 15:07:45 -0600 Subject: [PATCH 04/19] Add example experiment documentation for soilgrids analysis --- docs/example_experiment.md | 399 +++++++++++++++++++++++++++++++++++++ 1 file changed, 399 insertions(+) create mode 100644 docs/example_experiment.md diff --git a/docs/example_experiment.md b/docs/example_experiment.md new file mode 100644 index 0000000..00adce8 --- /dev/null +++ b/docs/example_experiment.md @@ -0,0 +1,399 @@ +# Worked example: adding an experiment + +This walkthrough builds an experiment from start to finish, using +[`exp_002_soilgrids`][exp002] as the example. It asks whether +near-surface soil properties from SoilGrids 2.0 improve the models +for the plant-group taxa and birds. + +It is a good first example because it uses the most involved +lever: covariates the frozen dataset does not hold. An experiment +that only changes formulas skips Step 3; everything else is the +same. To change the engine or selection rule instead, see the +[method-swap worked example](example_experiment_xgboost.md). + +Read [Getting started](getting_started.md) first. This page +assumes you can load the framework and reach the published +dataset, and that you know what a spec, stage, and draw are. Run +every code block from the repository root. + +- [Before you start](#before-you-start) +- [Step 1: Scaffold the folders](#step-1-scaffold-the-folders) +- [Step 2: Write down the question](#step-2-write-down-the-question) +- [Step 3: Produce the new covariates](#step-3-produce-the-new-covariates) +- [Step 4: Put the covariates in the formulas](#step-4-put-the-covariates-in-the-formulas) +- [Step 5: Configure the run](#step-5-configure-the-run) +- [Step 6: Run it at 5 draws](#step-6-run-it-at-5-draws) +- [Step 7: Check that it worked](#step-7-check-that-it-worked) +- [Step 8: Read the comparison](#step-8-read-the-comparison) +- [Step 9: Run at 100 draws and write it up](#step-9-run-at-100-draws-and-write-it-up) +- [Checklist](#checklist) + +## Before you start + +You need: + +- **Read access to `//ABMI-DATA2`**, for the published dataset and, + in this example, the SoilGrids layer. +- **exp_000 tables at the draw count you will run.** Every + experiment is compared with + `3_output/exp_000_parity_v2/tables/`. Compare a 5-draw run with a + 5-draw exp_000, and a 100-draw run with a 100-draw exp_000. + `run_experiment()` warns when the two differ. +- **Any packages your covariate script needs.** Here, that is + `sf`, `terra`, and + [sciSpatialR](https://github.com/ABbiodiversity/sciSpatialR). + +## Step 1: Scaffold the folders + +`new_experiment()` numbers the experiment and creates its three +folders. `exp_002_soilgrids` already exists, so to follow along, +give your own description. Preview first: + +```r +source("1_code/harness/new_experiment.R") +new_experiment("soilgrids walkthrough", dry_run = TRUE) +#> exp_003_soilgrids_walkthrough (dry run; nothing written) +#> ./1_code/experiments/exp_003_soilgrids_walkthrough +#> ./2_pipeline/exp_003_soilgrids_walkthrough +#> ./3_output/exp_003_soilgrids_walkthrough +``` + +Then drop `dry_run = TRUE` to create them. You get: + +``` +1_code/experiments// +├── README.md # the question; from _template/ +└── run.R # the decisions; id, title, author, date filled in +2_pipeline// +└── logs/ +3_output// +├── figures/ +├── tables/ +└── report.md # a stub +``` + +Leave `id` in `run.R` as it is. The rest of this page fills in +those two files and adds one script beside them. + +## Step 2: Write down the question + +Before writing code, fill in the experiment's `README.md`. Its +sections come from the template: Question, Design, How to read the +result, Result, and Assumptions and caveats. + +The most useful part is a design table that says what changes +relative to exp_000 and what does not. exp_002's: + +| | exp_000 (baseline) | exp_002 (this) | +| --- | --- | --- | +| Climate stage | v2's candidates (plants 58, birds 25), model-averaged | The same candidates, each with the nine soil terms added | +| Climate → habitat | Carried as `Climate` | The same; the carried prediction now includes soil | +| Habitat stage | v2 | v2, unchanged | +| Species, draws, seed | `parity_check`, 20260909 | The same | + +Write down the reasoning for each choice while you still have it. +exp_002 records three: + +- **Why the climate stage.** It is fitted once, province-wide, so + one set of formulas serves every region. Adding soil to the + habitat stage would need different formulas per region and a + soil value for every row of the habitat grids. +- **Why every candidate gets the terms.** The comparison between + candidates stays v2's, so the only change is the soil. +- **Why mammals are left out.** Their v2 climate is a precomputed + prediction, not a fitted stage, and their deployments have no + coordinates in the dataset. + +One change per experiment. If you find yourself changing two +things, make two experiments. + +## Step 3: Produce the new covariates + +The test dataset is frozen: never add columns to `0_data/` or +change `_setup/` for an experiment. Instead, write a script in the +experiment's folder that saves a CSV to `2_pipeline//inputs/`. +exp_002's is +[`01_extract_soilgrids_covariates.R`][exp002-extract]. + +### The file contract + +`experiment_config()` checks the file with +`check_covariate_files()` before anything is fitted. The file must: + +- have a `survey_unit_id` column, with **one row per unit** (no + repeats); +- use **column names not already in `covariates.csv`** or another + covariate file. exp_002 prefixes every column with `sg_` for + this reason. + +Units the file does not list, or lists with `NA`, drop out of any +model that uses the column. That is how exp_002 handles mammals +(no coordinates) and twelve plant-group units just outside the +1 km grid. Report how many units that removes, as exp_002's README +does, because those models fit on fewer units than exp_000. + +### What the script does + +The essentials of exp_002's script, in order: + +```r +library(data.table) +library(sciSpatialR) +library(sf) + +# 1. Locate the survey units, read only, from the published dataset +source("1_code/harness/data_source.R") +sites <- fread( + file.path(test_dataset_dir(), "sites.csv"), + select = c("survey_unit_id", "easting", "northing"), + colClasses = list(character = "survey_unit_id") +) + +# 2. Read the layer from the catalogue and keep the 0-5 cm bands +soil <- get_layer( + "geoscientificInformation/soilgrids_250_v2_ab/abmi1km" +) +soil <- soil[[grep("_0-5cm_mean$", names(soil), value = TRUE)]] + +# 3. Extract at each located unit (EPSG:3400, the layer's grid) +located <- sites[!is.na(easting) & !is.na(northing)] +points <- st_as_sf( + located, coords = c("easting", "northing"), crs = 3400 +) +values <- extract_points(soil, points, bind = FALSE) + +# 4. Write one row per survey unit, NA where there is no value +# (soil_table is built from `values`; see the full script) +fwrite( + soil_table, + "2_pipeline/exp_002_soilgrids/inputs/soilgrids_0_5cm.csv", + na = "" +) +``` + +Read the full script for the steps this excerpt skips: renaming +bands to `sg__0_5cm`, checking that exactly ten bands +were found, matching rows back to every unit, and a printed +report. It also writes `soilgrids_0_5cm_source.csv`, recording the +layer, DOI, depth, date, and method, so the inputs can be traced +later. Do the same for your own covariates. + +The script reads `SDM_SOILGRIDS`, if set, to use a local copy of +the raster instead of the share. + +## Step 4: Put the covariates in the formulas + +The covariates a run loads are read off the formulas it fits. So +naming a column in a formula is all it takes for the harness to +join it from `covariate_files`. + +Use `stage_models` in `run.R`. Keys are `stage` (every taxon in +the run) or `taxon.stage` (one taxon). exp_002 needs different v2 +sets for plants and birds, so it uses `taxon.stage` keys: + +```r +# Silt is left out: sand, silt, and clay sum to 100% +soil_terms <- c( + "sg_bdod_0_5cm", "sg_cec_0_5cm", "sg_cfvo_0_5cm", + "sg_clay_0_5cm", "sg_sand_0_5cm", "sg_nitrogen_0_5cm", + "sg_phh2o_0_5cm", "sg_soc_0_5cm", "sg_ocd_0_5cm" +) + +plant_taxa <- c("bryophyte", "lichen", "mite", "vascular_plant") + +stage_models <- c( + stats::setNames( + rep(list(extend_models("climate_plant_v2_full", soil_terms)), + length(plant_taxa)), + paste0(plant_taxa, ".climate") + ), + list(bird.climate = extend_models("climate_bird_v2", soil_terms)) +) +``` + +`extend_models()` takes a named v2 candidate set and adds the +terms to every formula in it, so the set keeps its size: + +```r +bird_soil <- extend_models( + "climate_bird_v2", c("sg_clay_0_5cm", "sg_sand_0_5cm") +) +length(bird_soil) +#> [1] 25 +bird_soil[1] +#> [1] ". ~ . + sg_clay_0_5cm + sg_sand_0_5cm" +``` + +To build a candidate set from covariates alone instead, see +`models_from_covariates()` in `1_code/harness/model_sets.R`. + +Leave out terms that are fixed by others (silt here), so the +models are identifiable. + +## Step 5: Configure the run + +Everything else in `experiment_config()` matches exp_000, so the +comparison is like for like: + +```r +config <- experiment_config( + id = "exp_002_soilgrids", + taxa = c(plant_taxa, "bird"), + species = "parity_check", # exp_000's species + n_bootstraps = 5, # 5 checks; 100 for a result + seed = 20260909, # exp_000's seed + stage_models = stage_models, # the change + covariate_files = soil_file, # where the sg_ columns come from + workers = 12 +) +``` + +`soil_file` is the CSV from Step 3. exp_002's `run.R` also runs +the extraction script when that file is missing, so one `source()` +call does everything: + +```r +soil_file <- "2_pipeline/exp_002_soilgrids/inputs/soilgrids_0_5cm.csv" + +if (!file.exists(soil_file)) { + source(file.path( + "1_code", "experiments", "exp_002_soilgrids", + "01_extract_soilgrids_covariates.R" + )) +} +``` + +Delete the CSV to extract again. + +`experiment_config()` checks the covariate file (Step 3's +contract), the runs named in `taxa`, and the draw count before +anything is fitted, and prints what it will do. A problem with any +of them stops it here, not hours in. + +## Step 6: Run it at 5 draws + +The last section of `run.R` is one call: + +```r +results <- run_experiment( + config, + translate = list(bird = bird_habitat_translation) +) +``` + +`translate` puts bird landcover coefficients onto v2's habitat +template, as exp_000 does. Keep it whenever birds are in the run. + +Then run the whole script: + +```r +source("1_code/experiments/exp_002_soilgrids/run.R") +``` + +Parallel workers load the framework from disk as they start, so do +not edit files in `1_code/` while the run is starting. + +## Step 7: Check that it worked + +Before reading any metric, confirm the run did what you asked. + +**Every job ran.** `2_pipeline//run_log.csv` has one row per +taxon, species, region, and draw, with `status` `ok` or the reason +it failed: + +```r +library(data.table) + +run_log <- fread("2_pipeline/exp_002_soilgrids/run_log.csv") +run_log[, .N, by = .(taxon, status)] +``` + +`run_experiment()` prints the same table at the end of fitting. + +**The right things were written.** `3_output//tables/coverage.csv` +has one row per run and region. `species = 0` means nothing ran; +check `run_log.csv` for why. + +**The change is on record.** `run_record.md` in `3_output//` +lists the `stage_models` keys and the covariate files. Each store's `meta.json` +records the covariates fitted and `models_overridden`, so a run +that did not fit the v2 sets cannot be mistaken for one that did. + +## Step 8: Read the comparison + +`run_experiment()` compares the run with exp_000 automatically. It +prints a headline per taxon, region, and metric: the median +difference from exp_000, and `share_better`, the share of species +that did better. It writes the per-species detail to +`3_output//tables/comparison_metrics.csv`: + +```r +comparison <- fread( + "3_output/exp_002_soilgrids/tables/comparison_metrics.csv" +) +comparison[metric == "oob_auc", .( + taxon, region, species, + median_baseline, median_candidate, difference, better +)] +``` + +| Column | Means | +| --- | --- | +| `median_baseline`, `p10_baseline`, `p90_baseline` | exp_000's median and 10-90% band over draws | +| `median_candidate`, `p10_candidate`, `p90_candidate` | This run's | +| `n_baseline`, `n_candidate` | Draws behind each side | +| `difference` | Candidate median minus baseline median | +| `better` | Whether the candidate moved the right way for that metric | + +The metrics are out-of-bag: each draw scored on the units it left +out. "Better" is higher AUC, deviance explained, and Spearman; +lower RMSE; and a calibration slope closer to 1. + +A difference is worth reading only if it is consistent across +species (`share_better`) and large relative to the bands. **A +5-draw run is a pipeline check, not a result.** Its bands are +unstable, and `parity_check` is two species per taxon. Say so +wherever you report it, as exp_002's README does. + +## Step 9: Run at 100 draws and write it up + +When the 5-draw run is clean: + +1. Set `n_bootstraps = 100` in `run.R`, and run again. +2. Compare it with a 100-draw exp_000. Check `n_baseline` and + `n_candidate` in `comparison_metrics.csv` are both 100. +3. Fill in the README's **Result** section. Report the comparison + and say what was run (species, draws, date). +4. Fill in **Assumptions and caveats**. exp_002's are a model: + what the covariate does and does not represent (a 1 km cell is + not a plot), correlated terms (so individual coefficients are + hard to interpret), units dropped for missing values, and the + extra parameters. +5. Commit the code folder and the small summaries in + `3_output//`: `run_record.md`, `report.md`, and the + `tables/` files `.gitignore` keeps. Commit only runs that count, + every species at 100 draws, and check `run_record.md` says so. + `2_pipeline/` is never committed. + +## Checklist + +- [ ] Scaffolded with `new_experiment()`; `id` in `run.R` + unchanged. +- [ ] Question, design table, and reasoning in the README before + the first run. +- [ ] One change relative to exp_000; species, seed, and draws + match it. +- [ ] New covariates written by a script in the experiment folder + to `2_pipeline//inputs/`, never to `0_data/`, with a + source record. +- [ ] Covariate file has one row per `survey_unit_id` and new + column names. +- [ ] Units lost to missing values counted and reported. +- [ ] 5-draw run: `run_log.csv` all `ok`, `coverage.csv` complete, + comparison written. +- [ ] 100-draw run compared with a 100-draw exp_000 before any + result is written. +- [ ] Result, assumptions, and caveats in the README. + +[exp002]: https://github.com/ABbiodiversity/sdmMethodsDev/blob/main/1_code/experiments/exp_002_soilgrids/README.md +[exp002-extract]: https://github.com/ABbiodiversity/sdmMethodsDev/blob/main/1_code/experiments/exp_002_soilgrids/01_extract_soilgrids_covariates.R From 06d348afab494b0e3610405e938c477f5d102be5 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 15:07:51 -0600 Subject: [PATCH 05/19] Add worked example for swapping the modelling method using xgboost --- docs/example_experiment_xgboost.md | 356 +++++++++++++++++++++++++++++ 1 file changed, 356 insertions(+) create mode 100644 docs/example_experiment_xgboost.md diff --git a/docs/example_experiment_xgboost.md b/docs/example_experiment_xgboost.md new file mode 100644 index 0000000..389192e --- /dev/null +++ b/docs/example_experiment_xgboost.md @@ -0,0 +1,356 @@ +# Worked example: swapping the modelling method + +This walkthrough builds an experiment that changes **how a stage +is fitted**, using [`exp_001_xgboost`][exp001] as the example. It +asks whether boosted regression trees fit the habitat stage better +than v2's linear models, for every taxon: the plant-group taxa, +mammals, and birds. + +It uses the `specs` lever: build the standard specs, change a +stage, and pass the specs in. No new data is needed. For an +experiment that adds covariates instead, see the +[SoilGrids worked example](example_experiment.md). Steps that are +the same in both point there rather than repeat. + +Read [Getting started](getting_started.md) first. Run every code +block from the repository root. + +- [Before you start](#before-you-start) +- [Step 1: Scaffold and write down the question](#step-1-scaffold-and-write-down-the-question) +- [Step 2: Why you cannot just swap the engine](#step-2-why-you-cannot-just-swap-the-engine) +- [Step 3: Make the change with replace_stage_method()](#step-3-make-the-change-with-replace_stage_method) +- [Step 4: Set the engine's settings](#step-4-set-the-engines-settings) +- [Step 5: Check the specs before running](#step-5-check-the-specs-before-running) +- [Step 6: Configure and run at 5 draws](#step-6-configure-and-run-at-5-draws) +- [Step 7: Check that it worked](#step-7-check-that-it-worked) +- [Step 8: Read the comparison](#step-8-read-the-comparison) +- [Step 9: Tune, run at 100 draws, and write it up](#step-9-tune-run-at-100-draws-and-write-it-up) +- [Checklist](#checklist) + +## Before you start + +You need: + +- **The engine's package.** Here, `xgboost`. Engines load their + package only when used, so a run that does not use xgboost does + not need it. +- **The engine registered.** `xgboost` already is, in + `1_code/methods/engines/xgboost.R`. To test a method that is not + registered yet, add it first; see the + [methods README][methods]. +- **exp_000 tables at the draw count you will run**, as in the + [SoilGrids example](example_experiment.md#before-you-start). + +Check what is registered, and what each selection rule needs from +an engine: + +```r +source("1_code/harness/harness.R") +load_framework() + +list_methods("engine") +list_methods("selection") # the `requires` column +``` + +## Step 1: Scaffold and write down the question + +Scaffold with `new_experiment()` and fill in the README, as in +Steps 1 and 2 of the +[SoilGrids example](example_experiment.md#step-1-scaffold-the-folders). + +exp_001's design table: + +| | exp_000 (baseline) | exp_001 (this) | +| --- | --- | --- | +| Climate stage | v2: GLM candidates, AICc model averaging (mammals: v2's precomputed prediction) | The same | +| Habitat stage (each spec's `habitat_stage`; birds: landcover) | v2: GLM candidates; IVW averaging (plants), staged BIC (birds), or the hurdle with best-by-AICc halves (mammals); v2's post-processing | `xgboost` with the `single` rule, on every covariate v2's habitat candidates use, `Climate` included | +| Climate → habitat | Carried as `Climate` | The same | +| Species, draws, seed | `parity_check`, 20260909 | The same | + +And the reasoning behind it: + +- **Why one formula.** A tree chooses its own variables, splits, + and interactions. So it is given every candidate covariate once, + as main effects, instead of v2's competing formulas. +- **Why mammals keep the hurdle.** The hurdle's structure + (presence on every deployment, then abundance where the species + was found) is a property of the data, not of the GLM. The trees + fit both halves. +- **What is dropped, and why.** v2's post-processing of habitat + coefficients: the plant stand-age splines, cutblock convergence, + pAspen, and footprint pooling, and the mammal tables, + calibration, and adjustments. They all read coefficients a tree + does not have. Say so in the README, because the baseline still + includes them. + +## Step 2: Why you cannot just swap the engine + +A stage names an **engine** (how one formula is fitted) and a +**selection rule** (how a candidate set becomes one result). Rules +need things from the engine. `ivw_grid`, v2's plant habitat rule, +averages coefficients weighted by their standard errors, so it +needs an engine that gives both. xgboost gives neither. + +Swap only the engine, and `validate_spec()` says so before +anything runs: + +```r +spec <- lichen_spec() +spec$stages[[2]]$engine <- "xgboost" +validate_spec(spec, stop_on_error = FALSE) +# (output wrapped to fit) +#> [1] "Stage `habitat`: selection rule `ivw_grid` needs +#> coefficients, se, which engine `xgboost` does not provide. +#> Choose a rule that does not, such as `single`." +``` + +So changing the method means changing three things together: the +engine, the rule, and the candidate set the rule chooses from. +Then v2 steps that read coefficients have to go too. + +## Step 3: Make the change with replace_stage_method() + +`replace_stage_method()` makes all of those changes in one call. +For a spec, it: + +1. Finds the stage to change: the spec's `habitat_stage` unless + you pass `stage`. +2. Replaces the candidate set with **one formula holding every + covariate the v2 candidates use** (`union = TRUE`, the + default). +3. Sets the engine, `control` settings, and rule (`single` by + default), and removes the information criterion and + `post_process`. For the last stage, it also removes + `final_prediction` and `validate`, which read v2 coefficient + tables. +4. Records the change in `v2_coverage` and `models_overridden`, so + no one can mistake the run for v2. + +Because each spec names its own habitat stage, one call works for +every taxon: + +```r +specs <- lapply( + standard_specs(), replace_stage_method, + engine = "xgboost", control = xgb_settings +) + +sapply(specs, function(spec) spec$habitat_stage) +#> bryophyte lichen mite vascular_plant mammal_summer +#> "habitat" "habitat" "habitat" "habitat" "habitat" +#> mammal_winter bird +#> "habitat" "landcover" +``` + +What changed for lichens: + +```r +before <- lichen_spec() +after <- replace_stage_method( + before, engine = "xgboost", control = xgb_settings +) + +before$stages[[2]][c("engine", "selection")] # bayesglm, ivw_grid +after$stages[[2]][c("engine", "selection")] # xgboost, single + +length(before$regions$north$habitat_models) +#> [1] 12 +length(after$regions$north$habitat_models) +#> [1] 1 + +after$models_overridden +# (output wrapped to fit) +#> [1] "habitat <- xgboost with `single`, on every covariate the +#> v2 candidates use" +``` + +**Composite rules keep their structure.** The mammal `hurdle` is a +rule that runs another rule in each part. `replace_stage_method()` +keeps the hurdle and puts the new rule inside it: + +```r +mammal <- replace_stage_method( + mammal_spec(season = "summer"), engine = "xgboost" +) +# Mammals have one fitted stage; v2's climate is precomputed +mammal$stages[[1]][c("selection", "part_selection")] +# hurdle, single +``` + +Two arguments change the defaults. `stage` changes a stage other +than `habitat_stage`. `union = FALSE` keeps the candidate set, for +a rule that compares candidates (it needs an engine with an +information criterion). + +## Step 4: Set the engine's settings + +Settings reach the engine through `control`. exp_001's, in +section 1.2 of its `run.R`: + +```r +xgb_settings <- list( + nrounds = 1000, # the most rounds; early stopping picks + eta = 0.05, # learning rate + max_depth = 3, # tree complexity + subsample = 0.5, # share of rows each tree sees + min_child_weight = 1 # smallest leaf, in weighted rows +) +``` + +The xgboost engine also takes `colsample_bytree`, +`early_stopping_rounds` (default 50), `valid_fraction` (default +0.2), and `seed`. It picks the number of rounds by early stopping +on a seeded holdout of each draw, then refits on the whole draw. +The full list and defaults are in the header of +[`1_code/methods/engines/xgboost.R`][xgboost]. + +These settings are **untuned**. They test the pipeline, not the +method at its best. Record that as a caveat until you tune them. + +## Step 5: Check the specs before running + +Before spending compute, confirm that every changed spec is valid +and says what it does: + +```r +invisible(lapply(specs, validate_spec)) # stops on any problem + +spec_coverage(list(lichen = specs$lichen)) +#> stage status +#> 1 climate reproduced +#> 2 habitat not reproduced +#> 3 validation reproduced +#> 4 resampling reproduced +``` + +The habitat stage is now `not reproduced`. Each store's +`meta.json` records these statuses and `models_overridden`, so the +stores themselves say this run is not v2. + +To check the engine itself on synthetic data: + +```r +check_engine("xgboost") +#> Engine `xgboost`: 9 of 9 checks pass +``` + +It fits small binomial and Poisson data with weights, an offset, +and a factor, and checks each part of the engine contract. Every +row should read `TRUE`. + +## Step 6: Configure and run at 5 draws + +Pass the changed specs to `experiment_config()`. Everything else +matches exp_000: + +```r +config <- experiment_config( + id = "exp_001_xgboost", + taxa = names(specs), + species = "parity_check", # exp_000's species + n_bootstraps = 5, # 5 checks; 100 for a result + seed = 20260909, # exp_000's seed + specs = specs, # the change + workers = 12 +) + +results <- run_experiment(config) +``` + +exp_001 does not pass `translate = list(bird = +bird_habitat_translation)`, which exp_000 and exp_002 do. That +step translates bird landcover coefficients onto v2's habitat +template, and a tree has no coefficients to translate. + +To try the change on fewer taxa first, narrow `taxa`, for example +`taxa = c("lichen", "bird")`. + +Run the whole script: + +```r +source("1_code/experiments/exp_001_xgboost/run.R") +``` + +## Step 7: Check that it worked + +Check `run_log.csv`, `coverage.csv`, and `run_record.md` as in +[Step 7 of the SoilGrids example](example_experiment.md#step-7-check-that-it-worked). +A new engine is more likely than a new covariate to fail on some +species or draws, so read the `note` column of any row whose +status is not `ok`. + +Two things are specific to a method without coefficients: + +- **Grid predictions carry the comparison.** With no + coefficients, each habitat type's effect is read from the tree's + prediction on the grid, in `grid_predictions.csv` and + `grid_summary.csv`. +- **`coefficients.csv` changes shape.** For plants and birds it + holds only the climate stage. For mammals, the hurdle writes its + per-habitat-type values there as three stages: + `habitat_presence`, `habitat_abundance`, and `habitat_total` + (their product). The mammal grid predictions are presence, as in + exp_000, so compare abundance and total through those rows. + +## Step 8: Read the comparison + +The comparison table and its columns are described in +[Step 8 of the SoilGrids example](example_experiment.md#step-8-read-the-comparison). +Changing the method adds four cautions. + +- **Read the out-of-bag metrics only.** A tree fits the units it + trained on far more closely than a GLM does, so in-sample + metrics flatter it. `comparison_metrics.csv` uses the `oob_` + metrics for this reason. +- **Read calibration with discrimination.** Untuned trees can + rank units well (higher AUC) while being overconfident + (calibration slope below 1). Report both. +- **The grid compares like with like only roughly.** Each grid row + is a pure stand of one habitat type at `Climate` 0. A GLM + extrapolates to that linearly; a tree holds the value of its + nearest split. Where a type is rare among the survey units, the + two can differ for that reason alone. +- **The baseline still has v2's post-processing**, and this run + does not. Differences in aged, cutblock, or footprint habitat + types partly reflect that. exp_000's mammal tables are v2's + calibrated tables; this run's grid predictions are not + calibrated. + +As always, a 5-draw run on `parity_check` is a pipeline check, +not a result. + +## Step 9: Tune, run at 100 draws, and write it up + +1. **Tune the settings** before judging the method, ideally per + taxon. The defaults' learning rate is higher than the usual + advice for boosted trees (see the engine's header). +2. Set `n_bootstraps = 100` and run again. Compare with a + 100-draw exp_000 of the same species. +3. Fill in the README's **Result** and **Assumptions and + caveats** sections. exp_001's caveats are a model: untuned + settings, the grid comparison, the post-processing the baseline + keeps, and what the mammal predictions are. +4. Commit only runs that count, as in + [Step 9 of the SoilGrids example](example_experiment.md#step-9-run-at-100-draws-and-write-it-up). + +## Checklist + +- [ ] The engine is registered and `check_engine()` passes. +- [ ] Question, design table, and what is dropped in the README + before the first run. +- [ ] Specs changed with `replace_stage_method()`, or by hand with + the same four changes. +- [ ] Every changed spec passes `validate_spec()`, and + `spec_coverage()` shows the replaced stage as not + reproduced. +- [ ] Species, seed, and draws match exp_000. +- [ ] 5-draw run: `run_log.csv` all `ok`, `coverage.csv` + complete, comparison written. +- [ ] Out-of-bag metrics and calibration read together; grid and + post-processing caveats stated. +- [ ] Settings tuned, and a 100-draw run compared with a 100-draw + exp_000, before any result is written. + +[exp001]: https://github.com/ABbiodiversity/sdmMethodsDev/blob/main/1_code/experiments/exp_001_xgboost/README.md +[methods]: https://github.com/ABbiodiversity/sdmMethodsDev/blob/main/1_code/methods/README.md +[xgboost]: https://github.com/ABbiodiversity/sdmMethodsDev/blob/main/1_code/methods/engines/xgboost.R From 4a8cb32bdb4a38fd5992b1941e76984664c18625 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Wed, 7 Oct 2026 15:07:59 -0600 Subject: [PATCH 06/19] Add worked examples for new covariates and different methods in documentation --- docs/_quarto.yml | 8 ++++++++ docs/getting_started.md | 6 ++++++ docs/index.md | 4 ++++ 3 files changed, 18 insertions(+) diff --git a/docs/_quarto.yml b/docs/_quarto.yml index 120c63b..80e5849 100644 --- a/docs/_quarto.yml +++ b/docs/_quarto.yml @@ -9,6 +9,8 @@ project: render: - index.md - getting_started.md + - example_experiment.md + - example_experiment_xgboost.md website: title: "sdmMethodsDev" @@ -21,6 +23,12 @@ website: text: Home - href: getting_started.md text: Getting started + - text: Worked examples + menu: + - href: example_experiment.md + text: "New covariates (exp_002_soilgrids)" + - href: example_experiment_xgboost.md + text: "A different method (exp_001_xgboost)" right: - icon: github href: https://github.com/ABbiodiversity/sdmMethodsDev diff --git a/docs/getting_started.md b/docs/getting_started.md index 3790ca7..e6b4594 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -372,6 +372,12 @@ An experiment asks one question by changing one thing relative to exp_000. Everything else (taxa, species, draws, seed) stays the same unless it is the question. +For a step-by-step build of a real experiment, from scaffolding to +write-up, see the worked examples: +[new covariates](example_experiment.md) (`exp_002_soilgrids`, lever +1) and [a different method](example_experiment_xgboost.md) +(`exp_001_xgboost`, lever 2). + ### Scaffold an experiment `new_experiment()` is base R and runs without `load_framework()`. diff --git a/docs/index.md b/docs/index.md index 01746a5..ee22c43 100644 --- a/docs/index.md +++ b/docs/index.md @@ -11,5 +11,9 @@ internal use. - **New here?** Start with [Getting started](getting_started.md): setup, running the v2 baseline, starting an experiment, and adding a taxon module. +- **Adding an experiment?** Follow a worked example: + [new covariates](example_experiment.md) (`exp_002_soilgrids`) + or [a different method](example_experiment_xgboost.md) + (`exp_001_xgboost`). - **The code and the full documentation** are in the [repository](https://github.com/ABbiodiversity/sdmMethodsDev). From 8ea4d1a8c95a7224ab2f88d88e5fd10afa099937 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 04:10:23 -0600 Subject: [PATCH 07/19] Update parity_summary.csv with trial run results and adjusted metrics for climate and habitat comparisons --- 1_code/experiments/exp_000_parity_v2/run.R | 5 +- 3_output/exp_000_parity_v2/report.md | 98 +- 3_output/exp_000_parity_v2/run_record.md | 656 +++--- .../exp_000_parity_v2/tables/coverage.csv | 28 +- .../exp_000_parity_v2/tables/grid_summary.csv | 1888 ++++++++--------- .../tables/metric_summary.csv | 1232 +++++------ .../tables/parity_summary.csv | 44 +- 7 files changed, 1976 insertions(+), 1975 deletions(-) diff --git a/1_code/experiments/exp_000_parity_v2/run.R b/1_code/experiments/exp_000_parity_v2/run.R index 8cb8266..084046f 100644 --- a/1_code/experiments/exp_000_parity_v2/run.R +++ b/1_code/experiments/exp_000_parity_v2/run.R @@ -54,7 +54,7 @@ config <- experiment_config( # 100 is v2's and the only count the gate reads; below ~20 the # 10-90% bands are unstable. 5 checks the plumbing. - n_bootstraps = 5, + n_bootstraps = 100, # Base seed; NULL is unseeded, as v2. Birds replay v2's draws. seed = 20260909, @@ -78,7 +78,8 @@ config <- experiment_config( # harmonized by _setup/08 config$v2_reference <- "abmiexplorer" config$v2_reference_dir <- file.path( - v2_results_dir(), "abmiexplorer" + v2_results_dir(), + "abmiexplorer" ) config$v2_reference_builder <- "1_code/_setup/08_harmonize_abmiexplorer_results.R" diff --git a/3_output/exp_000_parity_v2/report.md b/3_output/exp_000_parity_v2/report.md index 8e123ac..794fcc2 100644 --- a/3_output/exp_000_parity_v2/report.md +++ b/3_output/exp_000_parity_v2/report.md @@ -1,8 +1,8 @@ # exp_000_parity_v2 -Generated 2026-10-06 05:25:57 +Generated 2026-10-08 03:59:22 -**Trial run.** 14 focal species, 5 of 100 draws. Its parity numbers show the pipeline ran; they are not a parity read. +**Trial run.** 14 focal species, 100 of 100 draws. Its parity numbers show the pipeline ran; they are not a parity read. Draws: `seed = 20260909`, one derived seed per species. @@ -77,20 +77,20 @@ _Every taxon and region that ran had a reference to compare against._ | taxon | run | region | season | part | species | draws | stages | has_coefficients | has_grid | | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -| bird | bird | north | - | - | 2 | 5 | climate, landcover, habitat | TRUE | TRUE | -| bird | bird | south | - | - | 2 | 5 | climate, landcover, habitat | TRUE | TRUE | -| bryophyte | bryophyte | north | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| bryophyte | bryophyte | south | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| lichen | lichen | north | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| lichen | lichen | south | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| mammal | mammal_summer | north | summer | hurdle | 2 | 5 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | -| mammal | mammal_summer | south | summer | hurdle | 2 | 5 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | -| mammal | mammal_winter | north | winter | hurdle | 2 | 5 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | -| mammal | mammal_winter | south | winter | hurdle | 2 | 5 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | -| mite | mite | north | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| mite | mite | south | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| vascular_plant | vascular_plant | north | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | -| vascular_plant | vascular_plant | south | - | - | 2 | 5 | climate, habitat | TRUE | TRUE | +| bird | bird | north | - | - | 2 | 100 | climate, landcover, habitat | TRUE | TRUE | +| bird | bird | south | - | - | 2 | 100 | climate, landcover, habitat | TRUE | TRUE | +| bryophyte | bryophyte | north | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| bryophyte | bryophyte | south | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| lichen | lichen | north | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| lichen | lichen | south | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| mammal | mammal_summer | north | summer | hurdle | 2 | 100 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | +| mammal | mammal_summer | south | summer | hurdle | 2 | 100 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | +| mammal | mammal_winter | north | winter | hurdle | 2 | 100 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | +| mammal | mammal_winter | south | winter | hurdle | 2 | 100 | habitat_presence, habitat_abundance, habitat_total | TRUE | TRUE | +| mite | mite | north | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| mite | mite | south | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| vascular_plant | vascular_plant | north | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | +| vascular_plant | vascular_plant | south | - | - | 2 | 100 | climate, habitat | TRUE | TRUE | ## Parity against v2, by stage @@ -102,28 +102,28 @@ fixes at a placeholder are left out of the reachable scores. | taxon | region | stage | comparison | species | terms_compared | min_draws | in_band_pct | reachable_terms | reachable_in_band_pct | median_standardized_difference | median_absolute_difference | max_absolute_difference | negligible_terms | median_spearman | median_band_ratio | verdict | indicative_verdict | | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | -| bird | north | climate | median | 2 | 20 | 5 | 90.000 | 20 | 90.000 | 0.351 | 0.000 | 0.651 | 0 | 1.000 | 0.694 | not gated (store holds 5 draws) | - | -| bryophyte | north | climate | median | 1 | 19 | 5 | 94.700 | 19 | 94.700 | 0.671 | 0.000 | 1.810 | 5 | 0.991 | 0.214 | not gated (store holds 5 draws) | - | -| lichen | north | climate | median | 2 | 38 | 5 | 89.500 | 38 | 89.500 | 0.003 | 0.000 | 1.990 | 17 | 0.991 | 0.301 | not gated (store holds 5 draws) | - | -| mite | north | climate | median | 2 | 38 | 5 | 94.700 | 38 | 94.700 | 0.082 | 0.000 | 3.790 | 20 | 0.973 | 0.656 | not gated (store holds 5 draws) | - | -| vascular_plant | north | climate | median | 2 | 38 | 5 | 97.400 | 38 | 97.400 | 0.000 | 0.000 | 0.120 | 24 | 0.982 | 0.602 | not gated (store holds 5 draws) | - | -| bird | south | climate | median | 2 | 20 | 5 | 90.000 | 20 | 90.000 | 0.351 | 0.000 | 0.651 | 0 | 1.000 | 0.694 | not gated (store holds 5 draws) | - | -| bryophyte | south | climate | median | 1 | 19 | 5 | 94.700 | 19 | 94.700 | 0.671 | 0.000 | 1.810 | 5 | 0.991 | 0.214 | not gated (store holds 5 draws) | - | -| lichen | south | climate | median | 2 | 38 | 5 | 89.500 | 38 | 89.500 | 0.003 | 0.000 | 1.990 | 17 | 0.991 | 0.301 | not gated (store holds 5 draws) | - | -| mite | south | climate | median | 2 | 38 | 5 | 94.700 | 38 | 94.700 | 0.082 | 0.000 | 3.790 | 20 | 0.973 | 0.656 | not gated (store holds 5 draws) | - | -| vascular_plant | south | climate | median | 2 | 38 | 5 | 97.400 | 38 | 97.400 | 0.000 | 0.000 | 0.120 | 24 | 0.982 | 0.602 | not gated (store holds 5 draws) | - | -| bird | north | habitat | median | 2 | 178 | 5 | 92.700 | 168 | 92.300 | 0.569 | 0.023 | 2.820 | 0 | 0.989 | 0.699 | not gated (store holds 5 draws) | - | -| bryophyte | north | habitat | median | 1 | 94 | 5 | 98.900 | 94 | 98.900 | 0.360 | 0.062 | 0.256 | 0 | 0.987 | 0.502 | not gated (store holds 5 draws) | - | -| lichen | north | habitat | median | 2 | 188 | 5 | 94.700 | 188 | 94.700 | 0.251 | 0.038 | 0.289 | 0 | 0.996 | 0.642 | not gated (store holds 5 draws) | - | -| mammal | north | habitat | iteration 1 | 2 | 448 | 4 | 100.000 | 436 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | - | not gated (trial run) | - | -| mite | north | habitat | median | 1 | 94 | 5 | 76.600 | 94 | 76.600 | 0.579 | 0.078 | 0.673 | 0 | 0.993 | 0.642 | not gated (store holds 5 draws) | - | -| vascular_plant | north | habitat | median | 2 | 188 | 5 | 91.500 | 188 | 91.500 | 0.303 | 0.034 | 0.326 | 0 | 0.997 | 0.596 | not gated (store holds 5 draws) | - | -| bird | south | habitat | median | 2 | 46 | 5 | 80.400 | 40 | 77.500 | 0.334 | 0.021 | 0.121 | 0 | 0.995 | 0.508 | not gated (store holds 5 draws) | - | -| bryophyte | south | habitat | median | 1 | 19 | 5 | 100.000 | 19 | 100.000 | 0.399 | 0.066 | 0.267 | 0 | 0.991 | 0.633 | not gated (store holds 5 draws) | - | -| lichen | south | habitat | median | 2 | 40 | 5 | 87.500 | 40 | 87.500 | 0.337 | 0.048 | 0.655 | 1 | 0.985 | 0.554 | not gated (store holds 5 draws) | - | -| mammal | south | habitat | iteration 1 | 2 | 126 | 5 | 100.000 | 120 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | - | not gated (trial run) | - | -| mite | south | habitat | median | 2 | 40 | 5 | 95.000 | 40 | 95.000 | 0.175 | 0.030 | 0.754 | 1 | 0.992 | 0.581 | not gated (store holds 5 draws) | - | -| vascular_plant | south | habitat | median | 2 | 40 | 5 | 75.000 | 40 | 75.000 | 0.585 | 0.070 | 0.552 | 0 | 0.977 | 0.566 | not gated (store holds 5 draws) | - | +| bird | north | climate | median | 2 | 20 | 100 | 100.000 | 20 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | 1.000 | not gated (trial run) | pass | +| bryophyte | north | climate | median | 1 | 19 | 100 | 100.000 | 19 | 100.000 | 0.035 | 0.000 | 1.400 | 6 | 1.000 | 1.062 | not gated (trial run) | pass | +| lichen | north | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 0.644 | 17 | 0.993 | 0.879 | not gated (trial run) | pass | +| mite | north | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 1.950 | 20 | 0.905 | 0.953 | not gated (trial run) | pass | +| vascular_plant | north | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 0.266 | 24 | 1.000 | 0.970 | not gated (trial run) | pass | +| bird | south | climate | median | 2 | 20 | 100 | 100.000 | 20 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | 1.000 | not gated (trial run) | pass | +| bryophyte | south | climate | median | 1 | 19 | 100 | 100.000 | 19 | 100.000 | 0.035 | 0.000 | 1.400 | 6 | 1.000 | 1.062 | not gated (trial run) | pass | +| lichen | south | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 0.644 | 17 | 0.993 | 0.879 | not gated (trial run) | pass | +| mite | south | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 1.950 | 20 | 0.905 | 0.953 | not gated (trial run) | pass | +| vascular_plant | south | climate | median | 2 | 38 | 100 | 100.000 | 38 | 100.000 | 0.000 | 0.000 | 0.266 | 24 | 1.000 | 0.970 | not gated (trial run) | pass | +| bird | north | habitat | median | 2 | 178 | 100 | 100.000 | 168 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | 1.000 | not gated (trial run) | pass | +| bryophyte | north | habitat | median | 1 | 94 | 100 | 100.000 | 94 | 100.000 | 0.072 | 0.023 | 0.081 | 0 | 0.997 | 0.911 | not gated (trial run) | pass | +| lichen | north | habitat | median | 2 | 188 | 100 | 100.000 | 188 | 100.000 | 0.091 | 0.024 | 0.118 | 0 | 0.999 | 0.988 | not gated (trial run) | pass | +| mammal | north | habitat | iteration 1 | 2 | 448 | 65 | 100.000 | 436 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | - | not gated (trial run) | pass | +| mite | north | habitat | median | 1 | 94 | 100 | 100.000 | 94 | 100.000 | 0.140 | 0.035 | 0.148 | 0 | 0.999 | 0.993 | not gated (trial run) | pass | +| vascular_plant | north | habitat | median | 2 | 188 | 100 | 100.000 | 188 | 100.000 | 0.108 | 0.022 | 0.125 | 0 | 0.999 | 0.950 | not gated (trial run) | pass | +| bird | south | habitat | median | 2 | 46 | 100 | 100.000 | 40 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | 1.000 | not gated (trial run) | pass | +| bryophyte | south | habitat | median | 1 | 19 | 100 | 100.000 | 19 | 100.000 | 0.047 | 0.021 | 0.060 | 0 | 0.993 | 1.042 | not gated (trial run) | pass | +| lichen | south | habitat | median | 2 | 40 | 100 | 100.000 | 40 | 100.000 | 0.088 | 0.029 | 0.278 | 1 | 0.994 | 0.961 | not gated (trial run) | pass | +| mammal | south | habitat | iteration 1 | 2 | 126 | 99 | 100.000 | 120 | 100.000 | 0.000 | 0.000 | 0.000 | 0 | 1.000 | - | not gated (trial run) | pass | +| mite | south | habitat | median | 2 | 40 | 100 | 100.000 | 40 | 100.000 | 0.068 | 0.024 | 0.464 | 1 | 0.991 | 0.975 | not gated (trial run) | pass | +| vascular_plant | south | habitat | median | 2 | 40 | 100 | 100.000 | 40 | 100.000 | 0.074 | 0.027 | 0.184 | 0 | 0.997 | 1.021 | not gated (trial run) | pass | Where v2 bootstraps, parity is **distributional**: v2 seeds no random draw, so two v2 runs differ, and each term is scored on @@ -138,18 +138,18 @@ Median AUC over species, scored on each run's final model: for plants, v2's own | taxon | region | species | median_insample_auc | median_oob_auc | median_v2val_full | median_oob_v2val_full | | --- | --- | --- | --- | --- | --- | --- | -| bird | north | 2 | 0.752 | 0.729 | - | - | -| bryophyte | north | 2 | 0.668 | 0.650 | 0.668 | 0.650 | -| lichen | north | 2 | 0.808 | 0.803 | 0.808 | 0.803 | -| mammal | north | 4 | 0.746 | 0.731 | - | - | -| mite | north | 2 | 0.733 | 0.716 | 0.733 | 0.716 | -| vascular_plant | north | 2 | 0.833 | 0.828 | 0.833 | 0.828 | -| bird | south | 2 | 0.704 | 0.702 | - | - | -| bryophyte | south | 2 | 0.671 | 0.669 | 0.671 | 0.669 | +| bird | north | 2 | 0.751 | 0.730 | - | - | +| bryophyte | north | 2 | 0.668 | 0.652 | 0.668 | 0.652 | +| lichen | north | 2 | 0.808 | 0.802 | 0.808 | 0.802 | +| mammal | north | 4 | 0.751 | 0.730 | - | - | +| mite | north | 2 | 0.735 | 0.718 | 0.735 | 0.718 | +| vascular_plant | north | 2 | 0.833 | 0.829 | 0.833 | 0.829 | +| bird | south | 2 | 0.706 | 0.702 | - | - | +| bryophyte | south | 2 | 0.676 | 0.664 | 0.676 | 0.664 | | lichen | south | 2 | 0.802 | 0.792 | 0.802 | 0.792 | -| mammal | south | 4 | 0.753 | 0.686 | - | - | -| mite | south | 2 | 0.799 | 0.774 | 0.799 | 0.774 | -| vascular_plant | south | 2 | 0.848 | 0.846 | 0.848 | 0.846 | +| mammal | south | 4 | 0.739 | 0.716 | - | - | +| mite | south | 2 | 0.796 | 0.781 | 0.796 | 0.781 | +| vascular_plant | south | 2 | 0.850 | 0.844 | 0.850 | 0.844 | ## What is still needed diff --git a/3_output/exp_000_parity_v2/run_record.md b/3_output/exp_000_parity_v2/run_record.md index 17f6105..229ff92 100644 --- a/3_output/exp_000_parity_v2/run_record.md +++ b/3_output/exp_000_parity_v2/run_record.md @@ -6,10 +6,10 @@ Written by `run_record()`. The result stores this describes are gitignored; this _Volatile. Excluded from cross-run comparison._ -- **git_commit**: a45a17d +- **git_commit**: 4a8cb32 - **pipeline_dir**: D:/local_projects/active/sdmMethodsDev/2_pipeline/exp_000_parity_v2 - **r_version**: 4.5.0 -- **written_at**: 2026-10-06 11:25:57 +- **written_at**: 2026-10-08 09:59:23 ## Configuration @@ -20,10 +20,10 @@ _Volatile. Excluded from cross-run comparison._ - **data_dir**: published 2026-10-05 (//ABMI-DATA2/science/sdmMethodsDev/0_data/test_dataset/2026-10-05) - **engines**: bayesglm, glm - **focal_species**: bird=AMRO, bird=YEWA, bryophyte=Bryum.All, bryophyte=Ceratodon.purpureus, lichen=Cladonia.chlorophaea, lichen=Physcia.adscendens, mammal=Coyote_Summer, mammal=Coyote_Winter, mammal=Moose_Summer, mammal=Moose_Winter, mite=Ceratozetes.gracilis, mite=Trhypochthonius.tectorum, vascular_plant=Galium.boreale, vascular_plant=Vicia.americana -- **jobs_not_ok**: 0 -- **jobs_ok**: 140 -- **jobs_total**: 140 -- **n_bootstraps**: 5 +- **jobs_not_ok**: 1 +- **jobs_ok**: 2799 +- **jobs_total**: 2800 +- **n_bootstraps**: 100 - **plant_bootstrap**: spatial_block - **selection**: aic_average, hurdle, ivw_grid, staged_bic - **species_n**: 14 @@ -35,331 +35,331 @@ _Volatile. Excluded from cross-run comparison._ | taxon | region | species | draws | coefficient_rows | metric_rows | grid_rows | | --- | --- | --- | --- | --- | --- | --- | -| bird | north | 2 | 5 | 467 | 140 | 890 | -| bird | south | 2 | 5 | 350 | 140 | 170 | -| bryophyte | north | 2 | 5 | 1100 | 280 | 430 | -| bryophyte | south | 2 | 5 | 390 | 280 | 160 | -| lichen | north | 2 | 5 | 1100 | 280 | 430 | -| lichen | south | 2 | 5 | 390 | 280 | 160 | -| mammal_summer | north | 2 | 5 | 2204 | 140 | 450 | -| mammal_summer | south | 2 | 5 | 690 | 140 | 200 | -| mammal_winter | north | 2 | 5 | 2222 | 140 | 450 | -| mammal_winter | south | 2 | 5 | 690 | 140 | 200 | -| mite | north | 2 | 5 | 1090 | 280 | 430 | -| mite | south | 2 | 5 | 380 | 280 | 160 | -| vascular_plant | north | 2 | 5 | 1090 | 280 | 430 | -| vascular_plant | south | 2 | 5 | 380 | 280 | 160 | +| bird | north | 2 | 100 | 9380 | 2800 | 17800 | +| bird | south | 2 | 100 | 6986 | 2800 | 3400 | +| bryophyte | north | 2 | 100 | 22000 | 5600 | 8600 | +| bryophyte | south | 2 | 100 | 7800 | 5600 | 3200 | +| lichen | north | 2 | 100 | 22000 | 5600 | 8600 | +| lichen | south | 2 | 100 | 7800 | 5600 | 3200 | +| mammal_summer | north | 2 | 100 | 43450 | 2800 | 9000 | +| mammal_summer | south | 2 | 100 | 13731 | 2786 | 3980 | +| mammal_winter | north | 2 | 100 | 44008 | 2800 | 9000 | +| mammal_winter | south | 2 | 100 | 13800 | 2800 | 4000 | +| mite | north | 2 | 100 | 21800 | 5600 | 8600 | +| mite | south | 2 | 100 | 7600 | 5600 | 3200 | +| vascular_plant | north | 2 | 100 | 21800 | 5600 | 8600 | +| vascular_plant | south | 2 | 100 | 7600 | 5600 | 3200 | ## Metrics | taxon | region | metric | n | median | p10 | p90 | mean | sd | | --- | --- | --- | --- | --- | --- | --- | --- | --- | -| bird | north | insample_auc | 10 | 0.7522 | 0.7235 | 0.7796 | 0.7516 | 0.0288 | -| bird | north | insample_calibration_slope | 10 | 0.7559 | 0.6982 | 0.8102 | 0.7542 | 0.0543 | -| bird | north | insample_deviance_explained | 10 | 0.1996 | 0.1409 | 0.2605 | 0.2005 | 0.0613 | -| bird | north | insample_n | 10 | 46747.0000 | 46744.0000 | 46750.0000 | 46747.6000 | 2.3664 | -| bird | north | insample_prevalence | 10 | 0.1851 | 0.1178 | 0.2520 | 0.1850 | 0.0702 | -| bird | north | insample_rmse | 10 | 0.6070 | 0.5467 | 0.6643 | 0.6056 | 0.0609 | -| bird | north | insample_spearman | 10 | 0.3277 | 0.3148 | 0.3446 | 0.3293 | 0.0149 | -| bird | north | oob_auc | 10 | 0.7299 | 0.7284 | 0.7308 | 0.7296 | 0.0010 | -| bird | north | oob_calibration_slope | 10 | 0.7875 | 0.6454 | 0.8810 | 0.7730 | 0.1073 | -| bird | north | oob_deviance_explained | 10 | 0.1647 | 0.1509 | 0.1821 | 0.1658 | 0.0150 | -| bird | north | oob_n | 10 | 124877.0000 | 124874.0000 | 124880.0000 | 124876.4000 | 2.3664 | -| bird | north | oob_prevalence | 10 | 0.1877 | 0.1343 | 0.2411 | 0.1877 | 0.0561 | -| bird | north | oob_rmse | 10 | 0.6250 | 0.5831 | 0.6583 | 0.6230 | 0.0372 | -| bird | north | oob_spearman | 10 | 0.3117 | 0.2736 | 0.3483 | 0.3110 | 0.0389 | -| bird | south | insample_auc | 10 | 0.7052 | 0.6892 | 0.7215 | 0.7054 | 0.0153 | -| bird | south | insample_calibration_slope | 10 | 0.8775 | 0.8649 | 0.8901 | 0.8777 | 0.0119 | -| bird | south | insample_deviance_explained | 10 | 0.1561 | 0.0911 | 0.2337 | 0.1609 | 0.0728 | -| bird | south | insample_n | 10 | 23639.0000 | 23636.0000 | 23640.0000 | 23638.4000 | 1.4298 | -| bird | south | insample_prevalence | 10 | 0.2142 | 0.1711 | 0.2590 | 0.2149 | 0.0459 | -| bird | south | insample_rmse | 10 | 0.6840 | 0.6232 | 0.7452 | 0.6839 | 0.0623 | -| bird | south | insample_spearman | 10 | 0.2943 | 0.2880 | 0.2978 | 0.2933 | 0.0046 | -| bird | south | oob_auc | 10 | 0.7013 | 0.6892 | 0.7156 | 0.7019 | 0.0134 | -| bird | south | oob_calibration_slope | 10 | 0.9220 | 0.8622 | 0.9549 | 0.9086 | 0.0414 | -| bird | south | oob_deviance_explained | 10 | 0.1483 | 0.0969 | 0.2066 | 0.1498 | 0.0555 | -| bird | south | oob_n | 10 | 67168.0000 | 67167.0000 | 67171.0000 | 67168.6000 | 1.4298 | -| bird | south | oob_prevalence | 10 | 0.2178 | 0.1757 | 0.2603 | 0.2180 | 0.0444 | -| bird | south | oob_rmse | 10 | 0.6869 | 0.6369 | 0.7359 | 0.6867 | 0.0513 | -| bird | south | oob_spearman | 10 | 0.2916 | 0.2888 | 0.2927 | 0.2913 | 0.0017 | -| bryophyte | north | insample_auc | 10 | 0.6642 | 0.6314 | 0.7085 | 0.6676 | 0.0347 | -| bryophyte | north | insample_calibration_slope | 10 | 0.8499 | 0.7585 | 0.8973 | 0.8326 | 0.0644 | -| bryophyte | north | insample_deviance_explained | 10 | -0.1896 | -0.2902 | -0.0937 | -0.1928 | 0.0883 | -| bryophyte | north | insample_n | 10 | 3091.0000 | 3041.1000 | 4852.0000 | 3429.3000 | 750.2771 | -| bryophyte | north | insample_prevalence | 10 | 0.4175 | 0.3976 | 0.4423 | 0.4194 | 0.0223 | -| bryophyte | north | insample_rmse | 10 | 0.4736 | 0.4634 | 0.4802 | 0.4727 | 0.0076 | -| bryophyte | north | insample_spearman | 10 | 0.2805 | 0.2228 | 0.3578 | 0.2866 | 0.0614 | -| bryophyte | north | oob_auc | 8 | 0.6562 | 0.6254 | 0.6808 | 0.6537 | 0.0253 | -| bryophyte | north | oob_calibration_slope | 8 | 0.7707 | 0.6959 | 0.8841 | 0.7784 | 0.0797 | -| bryophyte | north | oob_deviance_explained | 8 | -0.1858 | -0.2157 | -0.1326 | -0.1818 | 0.0371 | -| bryophyte | north | oob_n | 10 | 1761.0000 | 0.0000 | 1810.9000 | 1422.7000 | 750.2771 | -| bryophyte | north | oob_prevalence | 8 | 0.4201 | 0.4007 | 0.4503 | 0.4233 | 0.0233 | -| bryophyte | north | oob_rmse | 8 | 0.4801 | 0.4711 | 0.4829 | 0.4781 | 0.0053 | -| bryophyte | north | oob_spearman | 8 | 0.2675 | 0.2128 | 0.3105 | 0.2630 | 0.0449 | -| bryophyte | north | oob_v2val_Climate | 8 | 0.6045 | 0.5487 | 0.6482 | 0.5986 | 0.0463 | -| bryophyte | north | oob_v2val_Climate_Truncated | 8 | 0.6045 | 0.5486 | 0.6482 | 0.5986 | 0.0463 | -| bryophyte | north | oob_v2val_Full | 8 | 0.6562 | 0.6254 | 0.6808 | 0.6537 | 0.0253 | -| bryophyte | north | oob_v2val_Full_Joint | 8 | 0.6538 | 0.6242 | 0.6786 | 0.6519 | 0.0247 | -| bryophyte | north | oob_v2val_Full_Joint_Truncated | 8 | 0.6546 | 0.6248 | 0.6788 | 0.6524 | 0.0246 | -| bryophyte | north | oob_v2val_Full_Truncated | 8 | 0.6571 | 0.6259 | 0.6811 | 0.6542 | 0.0252 | -| bryophyte | north | oob_v2val_Landcover | 8 | 0.5971 | 0.5798 | 0.6148 | 0.5974 | 0.0150 | -| bryophyte | north | v2val_Climate | 10 | 0.6069 | 0.5555 | 0.6643 | 0.6086 | 0.0518 | -| bryophyte | north | v2val_Climate_Truncated | 10 | 0.6069 | 0.5555 | 0.6643 | 0.6086 | 0.0518 | -| bryophyte | north | v2val_Full | 10 | 0.6642 | 0.6314 | 0.7085 | 0.6676 | 0.0347 | -| bryophyte | north | v2val_Full_Joint | 10 | 0.6615 | 0.6293 | 0.7047 | 0.6648 | 0.0336 | -| bryophyte | north | v2val_Full_Joint_Truncated | 10 | 0.6621 | 0.6299 | 0.7052 | 0.6652 | 0.0334 | -| bryophyte | north | v2val_Full_Truncated | 10 | 0.6647 | 0.6320 | 0.7089 | 0.6679 | 0.0346 | -| bryophyte | north | v2val_Landcover | 10 | 0.6082 | 0.5829 | 0.6350 | 0.6089 | 0.0226 | -| bryophyte | south | insample_auc | 10 | 0.6741 | 0.6221 | 0.7221 | 0.6723 | 0.0498 | -| bryophyte | south | insample_calibration_slope | 10 | 0.8833 | 0.8604 | 0.9293 | 0.8836 | 0.0487 | -| bryophyte | south | insample_deviance_explained | 10 | -0.0076 | -0.1062 | 0.0587 | -0.0180 | 0.0817 | -| bryophyte | south | insample_n | 10 | 1454.5000 | 1440.8000 | 2310.0000 | 1623.0000 | 362.3789 | -| bryophyte | south | insample_prevalence | 10 | 0.3052 | 0.2352 | 0.3713 | 0.3043 | 0.0687 | -| bryophyte | south | insample_rmse | 10 | 0.4407 | 0.3994 | 0.4751 | 0.4384 | 0.0377 | -| bryophyte | south | insample_spearman | 10 | 0.2678 | 0.2042 | 0.3271 | 0.2668 | 0.0610 | -| bryophyte | south | oob_auc | 8 | 0.6737 | 0.6156 | 0.7162 | 0.6682 | 0.0497 | -| bryophyte | south | oob_calibration_slope | 8 | 0.8626 | 0.7944 | 0.9233 | 0.8595 | 0.0569 | -| bryophyte | south | oob_deviance_explained | 8 | 0.0177 | -0.0430 | 0.0521 | 0.0106 | 0.0409 | -| bryophyte | south | oob_n | 10 | 855.5000 | 0.0000 | 869.2000 | 687.0000 | 362.3789 | -| bryophyte | south | oob_prevalence | 8 | 0.3139 | 0.2297 | 0.3751 | 0.3071 | 0.0716 | -| bryophyte | south | oob_rmse | 8 | 0.4447 | 0.3999 | 0.4766 | 0.4408 | 0.0371 | -| bryophyte | south | oob_spearman | 8 | 0.2693 | 0.1933 | 0.3245 | 0.2610 | 0.0620 | -| bryophyte | south | oob_v2val_Climate | 8 | 0.6045 | 0.5487 | 0.6482 | 0.5986 | 0.0463 | -| bryophyte | south | oob_v2val_Climate_Truncated | 8 | 0.6045 | 0.5486 | 0.6482 | 0.5986 | 0.0463 | -| bryophyte | south | oob_v2val_Full | 8 | 0.6737 | 0.6156 | 0.7162 | 0.6682 | 0.0497 | -| bryophyte | south | oob_v2val_Full_Joint | 8 | 0.6754 | 0.6148 | 0.7178 | 0.6689 | 0.0510 | -| bryophyte | south | oob_v2val_Full_Joint_Truncated | 8 | 0.6754 | 0.6148 | 0.7178 | 0.6689 | 0.0510 | -| bryophyte | south | oob_v2val_Full_Truncated | 8 | 0.6737 | 0.6156 | 0.7162 | 0.6682 | 0.0497 | -| bryophyte | south | oob_v2val_Landcover | 8 | 0.6029 | 0.5970 | 0.6332 | 0.6102 | 0.0172 | -| bryophyte | south | v2val_Climate | 10 | 0.6069 | 0.5555 | 0.6643 | 0.6086 | 0.0518 | -| bryophyte | south | v2val_Climate_Truncated | 10 | 0.6069 | 0.5555 | 0.6643 | 0.6086 | 0.0518 | -| bryophyte | south | v2val_Full | 10 | 0.6741 | 0.6221 | 0.7221 | 0.6723 | 0.0498 | -| bryophyte | south | v2val_Full_Joint | 10 | 0.6743 | 0.6214 | 0.7227 | 0.6726 | 0.0505 | -| bryophyte | south | v2val_Full_Joint_Truncated | 10 | 0.6743 | 0.6215 | 0.7227 | 0.6726 | 0.0505 | -| bryophyte | south | v2val_Full_Truncated | 10 | 0.6741 | 0.6221 | 0.7221 | 0.6723 | 0.0498 | -| bryophyte | south | v2val_Landcover | 10 | 0.6137 | 0.5905 | 0.6386 | 0.6139 | 0.0223 | -| lichen | north | insample_auc | 10 | 0.8074 | 0.7781 | 0.8388 | 0.8083 | 0.0311 | -| lichen | north | insample_calibration_slope | 10 | 1.0001 | 0.9745 | 1.0269 | 0.9999 | 0.0221 | -| lichen | north | insample_deviance_explained | 10 | 0.1360 | 0.1091 | 0.1649 | 0.1405 | 0.0261 | -| lichen | north | insample_n | 10 | 3692.0000 | 3654.0000 | 5811.0000 | 4109.1000 | 897.3877 | -| lichen | north | insample_prevalence | 10 | 0.3839 | 0.3815 | 0.3891 | 0.3840 | 0.0037 | -| lichen | north | insample_rmse | 10 | 0.4112 | 0.3929 | 0.4298 | 0.4111 | 0.0183 | -| lichen | north | insample_spearman | 10 | 0.5176 | 0.4685 | 0.5707 | 0.5194 | 0.0520 | -| lichen | north | oob_auc | 8 | 0.7997 | 0.7622 | 0.8453 | 0.8016 | 0.0403 | -| lichen | north | oob_calibration_slope | 8 | 0.9794 | 0.9485 | 1.0076 | 0.9784 | 0.0272 | -| lichen | north | oob_deviance_explained | 8 | 0.1271 | 0.0891 | 0.1748 | 0.1334 | 0.0469 | -| lichen | north | oob_n | 10 | 2119.0000 | 0.0000 | 2157.0000 | 1701.9000 | 897.3877 | -| lichen | north | oob_prevalence | 8 | 0.3864 | 0.3761 | 0.3921 | 0.3853 | 0.0072 | -| lichen | north | oob_rmse | 8 | 0.4171 | 0.3889 | 0.4363 | 0.4142 | 0.0224 | -| lichen | north | oob_spearman | 8 | 0.5059 | 0.4420 | 0.5824 | 0.5084 | 0.0681 | -| lichen | north | oob_v2val_Climate | 8 | 0.7041 | 0.6878 | 0.7158 | 0.7028 | 0.0127 | -| lichen | north | oob_v2val_Climate_Truncated | 8 | 0.7041 | 0.6878 | 0.7158 | 0.7028 | 0.0127 | -| lichen | north | oob_v2val_Full | 8 | 0.7997 | 0.7622 | 0.8453 | 0.8016 | 0.0403 | -| lichen | north | oob_v2val_Full_Joint | 8 | 0.7969 | 0.7616 | 0.8417 | 0.7996 | 0.0394 | -| lichen | north | oob_v2val_Full_Joint_Truncated | 8 | 0.7969 | 0.7615 | 0.8418 | 0.7996 | 0.0396 | -| lichen | north | oob_v2val_Full_Truncated | 8 | 0.7997 | 0.7624 | 0.8453 | 0.8016 | 0.0404 | -| lichen | north | oob_v2val_Landcover | 8 | 0.7481 | 0.6957 | 0.8186 | 0.7528 | 0.0579 | -| lichen | north | v2val_Climate | 10 | 0.7093 | 0.6916 | 0.7289 | 0.7101 | 0.0183 | -| lichen | north | v2val_Climate_Truncated | 10 | 0.7093 | 0.6916 | 0.7290 | 0.7101 | 0.0183 | -| lichen | north | v2val_Full | 10 | 0.8074 | 0.7781 | 0.8388 | 0.8083 | 0.0311 | -| lichen | north | v2val_Full_Joint | 10 | 0.8057 | 0.7771 | 0.8370 | 0.8071 | 0.0308 | -| lichen | north | v2val_Full_Joint_Truncated | 10 | 0.8057 | 0.7770 | 0.8372 | 0.8071 | 0.0309 | -| lichen | north | v2val_Full_Truncated | 10 | 0.8074 | 0.7780 | 0.8390 | 0.8083 | 0.0312 | -| lichen | north | v2val_Landcover | 10 | 0.7424 | 0.7115 | 0.8121 | 0.7566 | 0.0468 | -| lichen | south | insample_auc | 10 | 0.8021 | 0.7789 | 0.8223 | 0.8009 | 0.0226 | -| lichen | south | insample_calibration_slope | 10 | 0.9035 | 0.8740 | 1.0439 | 0.9436 | 0.0783 | -| lichen | south | insample_deviance_explained | 10 | 0.1705 | 0.0924 | 0.2412 | 0.1684 | 0.0753 | -| lichen | south | insample_n | 10 | 1484.5000 | 1478.5000 | 2346.0000 | 1657.8000 | 362.9370 | -| lichen | south | insample_prevalence | 10 | 0.1511 | 0.0868 | 0.2167 | 0.1525 | 0.0659 | -| lichen | south | insample_rmse | 10 | 0.3163 | 0.2688 | 0.3582 | 0.3146 | 0.0440 | -| lichen | south | insample_spearman | 10 | 0.3667 | 0.2735 | 0.4597 | 0.3676 | 0.0948 | -| lichen | south | oob_auc | 8 | 0.7976 | 0.7632 | 0.8185 | 0.7926 | 0.0270 | -| lichen | south | oob_calibration_slope | 8 | 0.9438 | 0.7927 | 1.1880 | 0.9710 | 0.1829 | -| lichen | south | oob_deviance_explained | 8 | 0.1218 | -0.0135 | 0.2395 | 0.1153 | 0.1246 | -| lichen | south | oob_n | 10 | 861.5000 | 0.0000 | 867.5000 | 688.2000 | 362.9370 | -| lichen | south | oob_prevalence | 8 | 0.1578 | 0.0943 | 0.2207 | 0.1582 | 0.0637 | -| lichen | south | oob_rmse | 8 | 0.3261 | 0.2806 | 0.3630 | 0.3232 | 0.0402 | -| lichen | south | oob_spearman | 8 | 0.3688 | 0.2665 | 0.4581 | 0.3651 | 0.0946 | -| lichen | south | oob_v2val_Climate | 8 | 0.7041 | 0.6878 | 0.7158 | 0.7028 | 0.0127 | -| lichen | south | oob_v2val_Climate_Truncated | 8 | 0.7041 | 0.6878 | 0.7158 | 0.7028 | 0.0127 | -| lichen | south | oob_v2val_Full | 8 | 0.7976 | 0.7632 | 0.8185 | 0.7926 | 0.0270 | -| lichen | south | oob_v2val_Full_Joint | 8 | 0.7958 | 0.7656 | 0.8153 | 0.7914 | 0.0240 | -| lichen | south | oob_v2val_Full_Joint_Truncated | 8 | 0.7958 | 0.7656 | 0.8153 | 0.7914 | 0.0240 | -| lichen | south | oob_v2val_Full_Truncated | 8 | 0.7976 | 0.7632 | 0.8185 | 0.7926 | 0.0270 | -| lichen | south | oob_v2val_Landcover | 8 | 0.7535 | 0.7464 | 0.7630 | 0.7537 | 0.0086 | -| lichen | south | v2val_Climate | 10 | 0.7093 | 0.6916 | 0.7289 | 0.7101 | 0.0183 | -| lichen | south | v2val_Climate_Truncated | 10 | 0.7093 | 0.6916 | 0.7290 | 0.7101 | 0.0183 | -| lichen | south | v2val_Full | 10 | 0.8021 | 0.7789 | 0.8223 | 0.8009 | 0.0226 | -| lichen | south | v2val_Full_Joint | 10 | 0.8018 | 0.7799 | 0.8189 | 0.8001 | 0.0202 | -| lichen | south | v2val_Full_Joint_Truncated | 10 | 0.8018 | 0.7799 | 0.8189 | 0.8001 | 0.0202 | -| lichen | south | v2val_Full_Truncated | 10 | 0.8021 | 0.7789 | 0.8223 | 0.8009 | 0.0226 | -| lichen | south | v2val_Landcover | 10 | 0.7535 | 0.7435 | 0.7653 | 0.7532 | 0.0119 | -| mammal_summer | north | insample_auc | 10 | 0.7207 | 0.6085 | 0.8216 | 0.7173 | 0.1099 | -| mammal_summer | north | insample_calibration_slope | 10 | 0.9417 | 0.8161 | 1.0198 | 0.9320 | 0.0845 | -| mammal_summer | north | insample_deviance_explained | 10 | 0.1542 | 0.0268 | 0.2763 | 0.1529 | 0.1296 | -| mammal_summer | north | insample_n | 10 | 2587.5000 | 2542.1000 | 4053.0000 | 2865.2000 | 626.3850 | -| mammal_summer | north | insample_prevalence | 10 | 0.2736 | 0.2243 | 0.3206 | 0.2726 | 0.0496 | -| mammal_summer | north | insample_rmse | 10 | 0.3836 | 0.3234 | 0.4410 | 0.3831 | 0.0608 | -| mammal_summer | north | insample_spearman | 10 | 0.3160 | 0.1627 | 0.4610 | 0.3131 | 0.1542 | -| mammal_summer | north | oob_auc | 8 | 0.7007 | 0.5879 | 0.8116 | 0.7020 | 0.1114 | -| mammal_summer | north | oob_calibration_slope | 8 | 0.8971 | 0.7046 | 0.9590 | 0.8583 | 0.1139 | -| mammal_summer | north | oob_deviance_explained | 8 | 0.1194 | 0.0155 | 0.2466 | 0.1282 | 0.1142 | -| mammal_summer | north | oob_n | 10 | 1465.5000 | 0.0000 | 1510.9000 | 1187.8000 | 626.3850 | -| mammal_summer | north | oob_prevalence | 8 | 0.2774 | 0.2208 | 0.3261 | 0.2746 | 0.0539 | -| mammal_summer | north | oob_rmse | 8 | 0.3919 | 0.3312 | 0.4445 | 0.3895 | 0.0585 | -| mammal_summer | north | oob_spearman | 8 | 0.2911 | 0.1268 | 0.4415 | 0.2892 | 0.1555 | -| mammal_summer | south | insample_auc | 10 | 0.7054 | 0.6336 | 0.8030 | 0.7149 | 0.0833 | -| mammal_summer | south | insample_calibration_slope | 10 | 0.9832 | 0.8710 | 1.0087 | 0.9605 | 0.0585 | -| mammal_summer | south | insample_deviance_explained | 10 | 0.1016 | 0.0257 | 0.2383 | 0.1233 | 0.1035 | -| mammal_summer | south | insample_n | 10 | 676.5000 | 670.8000 | 1065.0000 | 753.7000 | 164.1402 | -| mammal_summer | south | insample_prevalence | 10 | 0.4451 | 0.1814 | 0.7098 | 0.4419 | 0.2704 | -| mammal_summer | south | insample_rmse | 10 | 0.3814 | 0.3405 | 0.4191 | 0.3811 | 0.0380 | -| mammal_summer | south | insample_spearman | 10 | 0.2798 | 0.1705 | 0.4148 | 0.2864 | 0.1148 | -| mammal_summer | south | oob_auc | 8 | 0.6568 | 0.5888 | 0.7557 | 0.6672 | 0.0845 | -| mammal_summer | south | oob_calibration_slope | 8 | 0.6589 | 0.4354 | 1.0000 | 0.7200 | 0.2938 | -| mammal_summer | south | oob_deviance_explained | 8 | 0.0059 | -0.0790 | 0.1356 | 0.0219 | 0.1214 | -| mammal_summer | south | oob_n | 10 | 388.5000 | 0.0000 | 394.2000 | 311.3000 | 164.1402 | -| mammal_summer | south | oob_prevalence | 8 | 0.4195 | 0.1726 | 0.6930 | 0.4251 | 0.2678 | -| mammal_summer | south | oob_rmse | 8 | 0.3986 | 0.3422 | 0.4425 | 0.3948 | 0.0479 | -| mammal_summer | south | oob_spearman | 8 | 0.2181 | 0.1135 | 0.3243 | 0.2204 | 0.1080 | -| mammal_winter | north | insample_auc | 10 | 0.7608 | 0.6687 | 0.8445 | 0.7578 | 0.0888 | -| mammal_winter | north | insample_calibration_slope | 10 | 0.9604 | 0.9077 | 1.0052 | 0.9518 | 0.0647 | -| mammal_winter | north | insample_deviance_explained | 10 | 0.1877 | 0.0712 | 0.3014 | 0.1868 | 0.1161 | -| mammal_winter | north | insample_n | 10 | 2624.5000 | 2596.8000 | 4127.0000 | 2921.0000 | 635.9504 | -| mammal_winter | north | insample_prevalence | 10 | 0.1752 | 0.1467 | 0.2040 | 0.1753 | 0.0287 | -| mammal_winter | north | insample_rmse | 10 | 0.3149 | 0.2994 | 0.3346 | 0.3161 | 0.0165 | -| mammal_winter | north | insample_spearman | 10 | 0.3463 | 0.2134 | 0.4714 | 0.3427 | 0.1314 | -| mammal_winter | north | oob_auc | 8 | 0.7383 | 0.6458 | 0.8353 | 0.7401 | 0.0953 | -| mammal_winter | north | oob_calibration_slope | 8 | 0.8540 | 0.6612 | 0.9533 | 0.8259 | 0.1149 | -| mammal_winter | north | oob_deviance_explained | 8 | 0.1614 | 0.0413 | 0.2853 | 0.1646 | 0.1234 | -| mammal_winter | north | oob_n | 10 | 1502.5000 | 0.0000 | 1530.2000 | 1206.0000 | 635.9504 | -| mammal_winter | north | oob_prevalence | 8 | 0.1756 | 0.1450 | 0.2025 | 0.1746 | 0.0269 | -| mammal_winter | north | oob_rmse | 8 | 0.3180 | 0.3015 | 0.3423 | 0.3198 | 0.0192 | -| mammal_winter | north | oob_spearman | 8 | 0.3198 | 0.1800 | 0.4528 | 0.3184 | 0.1382 | -| mammal_winter | south | insample_auc | 10 | 0.7642 | 0.6906 | 0.8292 | 0.7651 | 0.0684 | -| mammal_winter | south | insample_calibration_slope | 10 | 0.9542 | 0.8588 | 1.0389 | 0.9614 | 0.0769 | -| mammal_winter | south | insample_deviance_explained | 10 | 0.1574 | 0.0675 | 0.2501 | 0.1637 | 0.0946 | -| mammal_winter | south | insample_n | 10 | 694.0000 | 684.8000 | 1098.0000 | 773.7000 | 171.0842 | -| mammal_winter | south | insample_prevalence | 10 | 0.3450 | 0.0865 | 0.6052 | 0.3446 | 0.2704 | -| mammal_winter | south | insample_rmse | 10 | 0.3145 | 0.2215 | 0.4071 | 0.3127 | 0.0960 | -| mammal_winter | south | insample_spearman | 10 | 0.3224 | 0.2964 | 0.3373 | 0.3206 | 0.0167 | -| mammal_winter | south | oob_auc | 8 | 0.7095 | 0.6257 | 0.7915 | 0.7074 | 0.0854 | -| mammal_winter | south | oob_calibration_slope | 8 | 0.7307 | 0.4495 | 0.8353 | 0.6770 | 0.1665 | -| mammal_winter | south | oob_deviance_explained | 8 | 0.0389 | 0.0035 | 0.1901 | 0.0790 | 0.0856 | -| mammal_winter | south | oob_n | 10 | 404.0000 | 0.0000 | 413.2000 | 324.3000 | 171.0842 | -| mammal_winter | south | oob_prevalence | 8 | 0.3501 | 0.0777 | 0.6225 | 0.3492 | 0.2818 | -| mammal_winter | south | oob_rmse | 8 | 0.3337 | 0.2202 | 0.4271 | 0.3264 | 0.1027 | -| mammal_winter | south | oob_spearman | 8 | 0.2450 | 0.1833 | 0.2817 | 0.2399 | 0.0463 | -| mite | north | insample_auc | 10 | 0.7336 | 0.6697 | 0.7962 | 0.7334 | 0.0621 | -| mite | north | insample_calibration_slope | 10 | 1.0028 | 0.9276 | 1.0341 | 0.9867 | 0.0488 | -| mite | north | insample_deviance_explained | 10 | 0.0502 | -0.0427 | 0.1395 | 0.0479 | 0.0867 | -| mite | north | insample_n | 10 | 3630.0000 | 3598.5000 | 5711.0000 | 4041.0000 | 880.4163 | -| mite | north | insample_prevalence | 10 | 0.1545 | 0.0943 | 0.2113 | 0.1531 | 0.0602 | -| mite | north | insample_rmse | 10 | 0.3279 | 0.2873 | 0.3658 | 0.3272 | 0.0404 | -| mite | north | insample_spearman | 10 | 0.2958 | 0.1729 | 0.4186 | 0.2953 | 0.1234 | -| mite | north | oob_auc | 8 | 0.7189 | 0.6461 | 0.7894 | 0.7187 | 0.0708 | -| mite | north | oob_calibration_slope | 8 | 0.9472 | 0.7462 | 1.0295 | 0.9187 | 0.1294 | -| mite | north | oob_deviance_explained | 8 | 0.0324 | -0.0828 | 0.1165 | 0.0211 | 0.1006 | -| mite | north | oob_n | 10 | 2081.0000 | 0.0000 | 2112.5000 | 1670.0000 | 880.4163 | -| mite | north | oob_prevalence | 8 | 0.1509 | 0.0925 | 0.2048 | 0.1495 | 0.0588 | -| mite | north | oob_rmse | 8 | 0.3263 | 0.2853 | 0.3680 | 0.3268 | 0.0416 | -| mite | north | oob_spearman | 8 | 0.2764 | 0.1475 | 0.4035 | 0.2761 | 0.1298 | -| mite | north | oob_v2val_Climate | 8 | 0.6835 | 0.6308 | 0.7383 | 0.6832 | 0.0539 | -| mite | north | oob_v2val_Climate_Truncated | 8 | 0.6834 | 0.6308 | 0.7383 | 0.6832 | 0.0539 | -| mite | north | oob_v2val_Full | 8 | 0.7189 | 0.6461 | 0.7894 | 0.7187 | 0.0708 | -| mite | north | oob_v2val_Full_Joint | 8 | 0.7191 | 0.6447 | 0.7888 | 0.7183 | 0.0712 | -| mite | north | oob_v2val_Full_Joint_Truncated | 8 | 0.7192 | 0.6448 | 0.7887 | 0.7183 | 0.0712 | -| mite | north | oob_v2val_Full_Truncated | 8 | 0.7190 | 0.6462 | 0.7893 | 0.7188 | 0.0708 | -| mite | north | oob_v2val_Landcover | 8 | 0.6850 | 0.6172 | 0.7620 | 0.6890 | 0.0750 | -| mite | north | v2val_Climate | 10 | 0.6950 | 0.6449 | 0.7401 | 0.6928 | 0.0480 | -| mite | north | v2val_Climate_Truncated | 10 | 0.6950 | 0.6449 | 0.7401 | 0.6928 | 0.0480 | -| mite | north | v2val_Full | 10 | 0.7336 | 0.6697 | 0.7962 | 0.7334 | 0.0621 | -| mite | north | v2val_Full_Joint | 10 | 0.7336 | 0.6692 | 0.7962 | 0.7334 | 0.0622 | -| mite | north | v2val_Full_Joint_Truncated | 10 | 0.7336 | 0.6692 | 0.7962 | 0.7334 | 0.0621 | -| mite | north | v2val_Full_Truncated | 10 | 0.7336 | 0.6697 | 0.7961 | 0.7334 | 0.0620 | -| mite | north | v2val_Landcover | 10 | 0.7057 | 0.6335 | 0.7708 | 0.7020 | 0.0683 | -| mite | south | insample_auc | 10 | 0.7997 | 0.7044 | 0.8840 | 0.7968 | 0.0893 | -| mite | south | insample_calibration_slope | 10 | 0.7882 | 0.6097 | 0.9768 | 0.7906 | 0.1787 | -| mite | south | insample_deviance_explained | 10 | 0.0405 | -0.0053 | 0.1740 | 0.0764 | 0.0831 | -| mite | south | insample_n | 10 | 1493.0000 | 1480.9000 | 2363.0000 | 1665.8000 | 367.6444 | -| mite | south | insample_prevalence | 10 | 0.0721 | 0.0556 | 0.0841 | 0.0703 | 0.0144 | -| mite | south | insample_rmse | 10 | 0.2482 | 0.2139 | 0.2709 | 0.2446 | 0.0273 | -| mite | south | insample_spearman | 10 | 0.2519 | 0.1954 | 0.3151 | 0.2550 | 0.0557 | -| mite | south | oob_auc | 8 | 0.7769 | 0.6582 | 0.8839 | 0.7745 | 0.1136 | -| mite | south | oob_calibration_slope | 8 | 0.6139 | 0.5353 | 0.8012 | 0.6444 | 0.1288 | -| mite | south | oob_deviance_explained | 8 | 0.0535 | 0.0095 | 0.2026 | 0.0819 | 0.0851 | -| mite | south | oob_n | 10 | 870.0000 | 0.0000 | 882.1000 | 697.2000 | 367.6444 | -| mite | south | oob_prevalence | 8 | 0.0719 | 0.0489 | 0.0868 | 0.0689 | 0.0174 | -| mite | south | oob_rmse | 8 | 0.2447 | 0.2147 | 0.2788 | 0.2456 | 0.0307 | -| mite | south | oob_spearman | 8 | 0.2233 | 0.1492 | 0.3189 | 0.2298 | 0.0764 | -| mite | south | oob_v2val_Climate | 8 | 0.6835 | 0.6308 | 0.7383 | 0.6832 | 0.0539 | -| mite | south | oob_v2val_Climate_Truncated | 8 | 0.6834 | 0.6308 | 0.7383 | 0.6832 | 0.0539 | -| mite | south | oob_v2val_Full | 8 | 0.7769 | 0.6582 | 0.8839 | 0.7745 | 0.1136 | -| mite | south | oob_v2val_Full_Joint | 8 | 0.7766 | 0.6587 | 0.8846 | 0.7751 | 0.1137 | -| mite | south | oob_v2val_Full_Joint_Truncated | 8 | 0.7766 | 0.6587 | 0.8846 | 0.7751 | 0.1137 | -| mite | south | oob_v2val_Full_Truncated | 8 | 0.7769 | 0.6582 | 0.8839 | 0.7745 | 0.1136 | -| mite | south | oob_v2val_Landcover | 8 | 0.6792 | 0.6125 | 0.7124 | 0.6651 | 0.0460 | -| mite | south | v2val_Climate | 10 | 0.6950 | 0.6449 | 0.7401 | 0.6928 | 0.0480 | -| mite | south | v2val_Climate_Truncated | 10 | 0.6950 | 0.6449 | 0.7401 | 0.6928 | 0.0480 | -| mite | south | v2val_Full | 10 | 0.7997 | 0.7044 | 0.8840 | 0.7968 | 0.0893 | -| mite | south | v2val_Full_Joint | 10 | 0.8014 | 0.7048 | 0.8843 | 0.7975 | 0.0894 | -| mite | south | v2val_Full_Joint_Truncated | 10 | 0.8014 | 0.7048 | 0.8843 | 0.7975 | 0.0894 | -| mite | south | v2val_Full_Truncated | 10 | 0.7997 | 0.7044 | 0.8840 | 0.7968 | 0.0893 | -| mite | south | v2val_Landcover | 10 | 0.7027 | 0.6602 | 0.7282 | 0.6970 | 0.0287 | -| vascular_plant | north | insample_auc | 10 | 0.8331 | 0.8298 | 0.8373 | 0.8332 | 0.0032 | -| vascular_plant | north | insample_calibration_slope | 10 | 0.9949 | 0.9743 | 1.0061 | 0.9918 | 0.0148 | -| vascular_plant | north | insample_deviance_explained | 10 | 0.1616 | 0.1396 | 0.1816 | 0.1602 | 0.0191 | -| vascular_plant | north | insample_n | 10 | 4347.5000 | 4314.6000 | 6874.0000 | 4846.9000 | 1068.6395 | -| vascular_plant | north | insample_prevalence | 10 | 0.3951 | 0.3770 | 0.4211 | 0.3974 | 0.0209 | -| vascular_plant | north | insample_rmse | 10 | 0.4022 | 0.3958 | 0.4067 | 0.4017 | 0.0048 | -| vascular_plant | north | insample_spearman | 10 | 0.5651 | 0.5611 | 0.5668 | 0.5644 | 0.0038 | -| vascular_plant | north | oob_auc | 8 | 0.8283 | 0.8227 | 0.8329 | 0.8284 | 0.0052 | -| vascular_plant | north | oob_calibration_slope | 8 | 0.9755 | 0.9539 | 1.0021 | 0.9776 | 0.0210 | -| vascular_plant | north | oob_deviance_explained | 8 | 0.1803 | 0.1354 | 0.2064 | 0.1750 | 0.0321 | -| vascular_plant | north | oob_n | 10 | 2526.5000 | 0.0000 | 2559.4000 | 2027.1000 | 1068.6395 | -| vascular_plant | north | oob_prevalence | 8 | 0.3990 | 0.3725 | 0.4275 | 0.3991 | 0.0248 | -| vascular_plant | north | oob_rmse | 8 | 0.4052 | 0.3988 | 0.4110 | 0.4048 | 0.0061 | -| vascular_plant | north | oob_spearman | 8 | 0.5545 | 0.5499 | 0.5651 | 0.5564 | 0.0065 | -| vascular_plant | north | oob_v2val_Climate | 8 | 0.6916 | 0.6808 | 0.6996 | 0.6902 | 0.0106 | -| vascular_plant | north | oob_v2val_Climate_Truncated | 8 | 0.6916 | 0.6808 | 0.6996 | 0.6902 | 0.0106 | -| vascular_plant | north | oob_v2val_Full | 8 | 0.8283 | 0.8227 | 0.8329 | 0.8284 | 0.0052 | -| vascular_plant | north | oob_v2val_Full_Joint | 8 | 0.8258 | 0.8182 | 0.8325 | 0.8258 | 0.0065 | -| vascular_plant | north | oob_v2val_Full_Joint_Truncated | 8 | 0.8258 | 0.8183 | 0.8323 | 0.8258 | 0.0064 | -| vascular_plant | north | oob_v2val_Full_Truncated | 8 | 0.8285 | 0.8228 | 0.8328 | 0.8284 | 0.0051 | -| vascular_plant | north | oob_v2val_Landcover | 8 | 0.8009 | 0.7954 | 0.8101 | 0.8024 | 0.0067 | -| vascular_plant | north | v2val_Climate | 10 | 0.6886 | 0.6855 | 0.6950 | 0.6902 | 0.0048 | -| vascular_plant | north | v2val_Climate_Truncated | 10 | 0.6886 | 0.6855 | 0.6949 | 0.6902 | 0.0048 | -| vascular_plant | north | v2val_Full | 10 | 0.8331 | 0.8298 | 0.8373 | 0.8332 | 0.0032 | -| vascular_plant | north | v2val_Full_Joint | 10 | 0.8318 | 0.8275 | 0.8367 | 0.8320 | 0.0039 | -| vascular_plant | north | v2val_Full_Joint_Truncated | 10 | 0.8319 | 0.8277 | 0.8366 | 0.8321 | 0.0038 | -| vascular_plant | north | v2val_Full_Truncated | 10 | 0.8330 | 0.8299 | 0.8373 | 0.8332 | 0.0031 | -| vascular_plant | north | v2val_Landcover | 10 | 0.8087 | 0.8049 | 0.8130 | 0.8092 | 0.0040 | -| vascular_plant | south | insample_auc | 10 | 0.8460 | 0.8042 | 0.8967 | 0.8490 | 0.0462 | -| vascular_plant | south | insample_calibration_slope | 10 | 0.9608 | 0.9208 | 0.9855 | 0.9580 | 0.0297 | -| vascular_plant | south | insample_deviance_explained | 10 | 0.2841 | 0.1600 | 0.3822 | 0.2752 | 0.1074 | -| vascular_plant | south | insample_n | 10 | 1688.5000 | 1654.9000 | 2648.0000 | 1869.6000 | 410.6067 | -| vascular_plant | south | insample_prevalence | 10 | 0.2438 | 0.2212 | 0.2654 | 0.2437 | 0.0227 | -| vascular_plant | south | insample_rmse | 10 | 0.3477 | 0.3070 | 0.3827 | 0.3458 | 0.0374 | -| vascular_plant | south | insample_spearman | 10 | 0.5180 | 0.4628 | 0.5647 | 0.5163 | 0.0529 | -| vascular_plant | south | oob_auc | 8 | 0.8412 | 0.8038 | 0.8909 | 0.8455 | 0.0409 | -| vascular_plant | south | oob_calibration_slope | 8 | 0.9408 | 0.9073 | 0.9701 | 0.9401 | 0.0277 | -| vascular_plant | south | oob_deviance_explained | 8 | 0.2459 | 0.1728 | 0.3387 | 0.2532 | 0.0850 | -| vascular_plant | south | oob_n | 10 | 959.5000 | 0.0000 | 993.1000 | 778.4000 | 410.6067 | -| vascular_plant | south | oob_prevalence | 8 | 0.2418 | 0.2131 | 0.2706 | 0.2421 | 0.0259 | -| vascular_plant | south | oob_rmse | 8 | 0.3513 | 0.3168 | 0.3827 | 0.3502 | 0.0336 | -| vascular_plant | south | oob_spearman | 8 | 0.5033 | 0.4643 | 0.5589 | 0.5099 | 0.0446 | -| vascular_plant | south | oob_v2val_Climate | 8 | 0.6916 | 0.6808 | 0.6996 | 0.6902 | 0.0106 | -| vascular_plant | south | oob_v2val_Climate_Truncated | 8 | 0.6916 | 0.6808 | 0.6996 | 0.6902 | 0.0106 | -| vascular_plant | south | oob_v2val_Full | 8 | 0.8412 | 0.8038 | 0.8909 | 0.8455 | 0.0409 | -| vascular_plant | south | oob_v2val_Full_Joint | 8 | 0.8369 | 0.8023 | 0.8809 | 0.8406 | 0.0373 | -| vascular_plant | south | oob_v2val_Full_Joint_Truncated | 8 | 0.8369 | 0.8023 | 0.8809 | 0.8406 | 0.0373 | -| vascular_plant | south | oob_v2val_Full_Truncated | 8 | 0.8412 | 0.8038 | 0.8908 | 0.8455 | 0.0409 | -| vascular_plant | south | oob_v2val_Landcover | 8 | 0.7762 | 0.7677 | 0.7961 | 0.7793 | 0.0125 | -| vascular_plant | south | v2val_Climate | 10 | 0.6886 | 0.6855 | 0.6950 | 0.6902 | 0.0048 | -| vascular_plant | south | v2val_Climate_Truncated | 10 | 0.6886 | 0.6855 | 0.6949 | 0.6902 | 0.0048 | -| vascular_plant | south | v2val_Full | 10 | 0.8460 | 0.8042 | 0.8967 | 0.8490 | 0.0462 | -| vascular_plant | south | v2val_Full_Joint | 10 | 0.8411 | 0.8013 | 0.8920 | 0.8446 | 0.0448 | -| vascular_plant | south | v2val_Full_Joint_Truncated | 10 | 0.8411 | 0.8013 | 0.8920 | 0.8446 | 0.0448 | -| vascular_plant | south | v2val_Full_Truncated | 10 | 0.8460 | 0.8042 | 0.8967 | 0.8490 | 0.0462 | -| vascular_plant | south | v2val_Landcover | 10 | 0.7783 | 0.7609 | 0.8028 | 0.7802 | 0.0202 | +| bird | north | insample_auc | 200 | 0.7500 | 0.7218 | 0.7798 | 0.7506 | 0.0276 | +| bird | north | insample_calibration_slope | 200 | 0.7722 | 0.6665 | 0.8113 | 0.7438 | 0.0642 | +| bird | north | insample_deviance_explained | 200 | 0.1986 | 0.1403 | 0.2614 | 0.2004 | 0.0587 | +| bird | north | insample_n | 200 | 46751.0000 | 46746.9000 | 46756.1000 | 46751.0000 | 3.7804 | +| bird | north | insample_prevalence | 200 | 0.1847 | 0.1183 | 0.2520 | 0.1850 | 0.0662 | +| bird | north | insample_rmse | 200 | 0.6168 | 0.5471 | 0.6665 | 0.6079 | 0.0561 | +| bird | north | insample_spearman | 200 | 0.3268 | 0.3129 | 0.3440 | 0.3282 | 0.0135 | +| bird | north | oob_auc | 200 | 0.7300 | 0.7283 | 0.7318 | 0.7300 | 0.0014 | +| bird | north | oob_calibration_slope | 200 | 0.7890 | 0.6073 | 0.8883 | 0.7598 | 0.1235 | +| bird | north | oob_deviance_explained | 200 | 0.1637 | 0.1508 | 0.1808 | 0.1654 | 0.0135 | +| bird | north | oob_n | 200 | 124873.0000 | 124867.9000 | 124877.1000 | 124873.0000 | 3.7804 | +| bird | north | oob_prevalence | 200 | 0.1874 | 0.1341 | 0.2415 | 0.1877 | 0.0536 | +| bird | north | oob_rmse | 200 | 0.6356 | 0.5854 | 0.6588 | 0.6249 | 0.0334 | +| bird | north | oob_spearman | 200 | 0.3108 | 0.2728 | 0.3502 | 0.3113 | 0.0376 | +| bird | south | insample_auc | 200 | 0.7048 | 0.6906 | 0.7212 | 0.7057 | 0.0137 | +| bird | south | insample_calibration_slope | 200 | 0.8737 | 0.8625 | 0.9017 | 0.8790 | 0.0150 | +| bird | south | insample_deviance_explained | 200 | 0.1578 | 0.0908 | 0.2349 | 0.1620 | 0.0698 | +| bird | south | insample_n | 200 | 23638.0000 | 23635.0000 | 23641.0000 | 23638.2600 | 2.2174 | +| bird | south | insample_prevalence | 200 | 0.2151 | 0.1714 | 0.2596 | 0.2153 | 0.0429 | +| bird | south | insample_rmse | 200 | 0.6840 | 0.6223 | 0.7470 | 0.6847 | 0.0588 | +| bird | south | insample_spearman | 200 | 0.2942 | 0.2895 | 0.2994 | 0.2941 | 0.0039 | +| bird | south | oob_auc | 200 | 0.7012 | 0.6882 | 0.7164 | 0.7019 | 0.0131 | +| bird | south | oob_calibration_slope | 200 | 0.8829 | 0.8479 | 0.9478 | 0.8932 | 0.0402 | +| bird | south | oob_deviance_explained | 200 | 0.1475 | 0.0919 | 0.2042 | 0.1483 | 0.0529 | +| bird | south | oob_n | 200 | 67169.0000 | 67166.0000 | 67172.0000 | 67168.7400 | 2.2174 | +| bird | south | oob_prevalence | 200 | 0.2175 | 0.1751 | 0.2606 | 0.2178 | 0.0425 | +| bird | south | oob_rmse | 200 | 0.6870 | 0.6369 | 0.7370 | 0.6869 | 0.0488 | +| bird | south | oob_spearman | 200 | 0.2911 | 0.2888 | 0.2936 | 0.2911 | 0.0019 | +| bryophyte | north | insample_auc | 200 | 0.6680 | 0.6329 | 0.7027 | 0.6686 | 0.0297 | +| bryophyte | north | insample_calibration_slope | 200 | 0.8589 | 0.7752 | 0.9074 | 0.8466 | 0.0529 | +| bryophyte | north | insample_deviance_explained | 200 | -0.1748 | -0.2679 | -0.0981 | -0.1825 | 0.0656 | +| bryophyte | north | insample_n | 200 | 3069.0000 | 3035.0000 | 3101.0000 | 3086.6150 | 179.5128 | +| bryophyte | north | insample_prevalence | 200 | 0.4195 | 0.3957 | 0.4466 | 0.4205 | 0.0215 | +| bryophyte | north | insample_rmse | 200 | 0.4729 | 0.4647 | 0.4804 | 0.4726 | 0.0064 | +| bryophyte | north | insample_spearman | 200 | 0.2870 | 0.2261 | 0.3483 | 0.2883 | 0.0526 | +| bryophyte | north | oob_auc | 198 | 0.6547 | 0.6113 | 0.6909 | 0.6520 | 0.0321 | +| bryophyte | north | oob_calibration_slope | 198 | 0.7839 | 0.6265 | 0.8891 | 0.7652 | 0.1028 | +| bryophyte | north | oob_deviance_explained | 198 | -0.1941 | -0.3103 | -0.0973 | -0.2016 | 0.0836 | +| bryophyte | north | oob_n | 200 | 1783.0000 | 1751.0000 | 1817.0000 | 1765.3850 | 179.5128 | +| bryophyte | north | oob_prevalence | 198 | 0.4186 | 0.3933 | 0.4485 | 0.4206 | 0.0219 | +| bryophyte | north | oob_rmse | 198 | 0.4775 | 0.4677 | 0.4866 | 0.4775 | 0.0071 | +| bryophyte | north | oob_spearman | 198 | 0.2648 | 0.1893 | 0.3288 | 0.2600 | 0.0564 | +| bryophyte | north | oob_v2val_Climate | 198 | 0.6045 | 0.5460 | 0.6535 | 0.5999 | 0.0478 | +| bryophyte | north | oob_v2val_Climate_Truncated | 198 | 0.6045 | 0.5459 | 0.6535 | 0.5999 | 0.0479 | +| bryophyte | north | oob_v2val_Full | 198 | 0.6547 | 0.6113 | 0.6909 | 0.6520 | 0.0321 | +| bryophyte | north | oob_v2val_Full_Joint | 198 | 0.6525 | 0.6101 | 0.6885 | 0.6498 | 0.0313 | +| bryophyte | north | oob_v2val_Full_Joint_Truncated | 198 | 0.6534 | 0.6104 | 0.6886 | 0.6501 | 0.0311 | +| bryophyte | north | oob_v2val_Full_Truncated | 198 | 0.6555 | 0.6115 | 0.6910 | 0.6523 | 0.0320 | +| bryophyte | north | oob_v2val_Landcover | 198 | 0.5970 | 0.5707 | 0.6262 | 0.5975 | 0.0219 | +| bryophyte | north | v2val_Climate | 200 | 0.6069 | 0.5588 | 0.6582 | 0.6085 | 0.0456 | +| bryophyte | north | v2val_Climate_Truncated | 200 | 0.6069 | 0.5588 | 0.6582 | 0.6085 | 0.0457 | +| bryophyte | north | v2val_Full | 200 | 0.6680 | 0.6329 | 0.7027 | 0.6686 | 0.0297 | +| bryophyte | north | v2val_Full_Joint | 200 | 0.6660 | 0.6316 | 0.6994 | 0.6661 | 0.0288 | +| bryophyte | north | v2val_Full_Joint_Truncated | 200 | 0.6662 | 0.6326 | 0.6996 | 0.6665 | 0.0286 | +| bryophyte | north | v2val_Full_Truncated | 200 | 0.6682 | 0.6341 | 0.7028 | 0.6689 | 0.0295 | +| bryophyte | north | v2val_Landcover | 200 | 0.6103 | 0.5865 | 0.6342 | 0.6103 | 0.0195 | +| bryophyte | south | insample_auc | 200 | 0.6758 | 0.6249 | 0.7251 | 0.6759 | 0.0435 | +| bryophyte | south | insample_calibration_slope | 200 | 0.8998 | 0.8402 | 0.9680 | 0.9030 | 0.0527 | +| bryophyte | south | insample_deviance_explained | 200 | 0.0102 | -0.0965 | 0.0790 | -0.0061 | 0.0681 | +| bryophyte | south | insample_n | 200 | 1461.5000 | 1440.9000 | 1484.0000 | 1469.9300 | 86.4473 | +| bryophyte | south | insample_prevalence | 200 | 0.3038 | 0.2345 | 0.3768 | 0.3050 | 0.0656 | +| bryophyte | south | insample_rmse | 200 | 0.4411 | 0.3996 | 0.4745 | 0.4379 | 0.0349 | +| bryophyte | south | insample_spearman | 200 | 0.2761 | 0.2093 | 0.3338 | 0.2731 | 0.0521 | +| bryophyte | south | oob_auc | 198 | 0.6605 | 0.6050 | 0.7223 | 0.6633 | 0.0484 | +| bryophyte | south | oob_calibration_slope | 198 | 0.8186 | 0.6598 | 1.0048 | 0.8291 | 0.1351 | +| bryophyte | south | oob_deviance_explained | 198 | -0.0111 | -0.1185 | 0.0835 | -0.0144 | 0.0734 | +| bryophyte | south | oob_n | 200 | 848.5000 | 826.0000 | 869.1000 | 840.0700 | 86.4473 | +| bryophyte | south | oob_prevalence | 198 | 0.3062 | 0.2295 | 0.3842 | 0.3056 | 0.0673 | +| bryophyte | south | oob_rmse | 198 | 0.4439 | 0.3996 | 0.4797 | 0.4415 | 0.0356 | +| bryophyte | south | oob_spearman | 198 | 0.2511 | 0.1747 | 0.3324 | 0.2529 | 0.0613 | +| bryophyte | south | oob_v2val_Climate | 198 | 0.6045 | 0.5460 | 0.6535 | 0.5999 | 0.0478 | +| bryophyte | south | oob_v2val_Climate_Truncated | 198 | 0.6045 | 0.5459 | 0.6535 | 0.5999 | 0.0479 | +| bryophyte | south | oob_v2val_Full | 198 | 0.6605 | 0.6050 | 0.7223 | 0.6633 | 0.0484 | +| bryophyte | south | oob_v2val_Full_Joint | 198 | 0.6613 | 0.6046 | 0.7229 | 0.6636 | 0.0489 | +| bryophyte | south | oob_v2val_Full_Joint_Truncated | 198 | 0.6613 | 0.6048 | 0.7229 | 0.6636 | 0.0489 | +| bryophyte | south | oob_v2val_Full_Truncated | 198 | 0.6605 | 0.6050 | 0.7223 | 0.6634 | 0.0484 | +| bryophyte | south | oob_v2val_Landcover | 198 | 0.6058 | 0.5744 | 0.6394 | 0.6074 | 0.0243 | +| bryophyte | south | v2val_Climate | 200 | 0.6069 | 0.5588 | 0.6582 | 0.6085 | 0.0456 | +| bryophyte | south | v2val_Climate_Truncated | 200 | 0.6069 | 0.5588 | 0.6582 | 0.6085 | 0.0457 | +| bryophyte | south | v2val_Full | 200 | 0.6758 | 0.6249 | 0.7251 | 0.6759 | 0.0435 | +| bryophyte | south | v2val_Full_Joint | 200 | 0.6771 | 0.6255 | 0.7263 | 0.6763 | 0.0442 | +| bryophyte | south | v2val_Full_Joint_Truncated | 200 | 0.6771 | 0.6256 | 0.7263 | 0.6764 | 0.0442 | +| bryophyte | south | v2val_Full_Truncated | 200 | 0.6759 | 0.6249 | 0.7251 | 0.6760 | 0.0435 | +| bryophyte | south | v2val_Landcover | 200 | 0.6182 | 0.5948 | 0.6421 | 0.6183 | 0.0179 | +| lichen | north | insample_auc | 200 | 0.8091 | 0.7720 | 0.8423 | 0.8075 | 0.0317 | +| lichen | north | insample_calibration_slope | 200 | 0.9953 | 0.9646 | 1.0282 | 0.9962 | 0.0251 | +| lichen | north | insample_deviance_explained | 200 | 0.1415 | 0.1093 | 0.1775 | 0.1421 | 0.0262 | +| lichen | north | insample_n | 200 | 3674.5000 | 3639.0000 | 3709.0000 | 3695.5700 | 214.7712 | +| lichen | north | insample_prevalence | 200 | 0.3844 | 0.3787 | 0.3905 | 0.3847 | 0.0044 | +| lichen | north | insample_rmse | 200 | 0.4121 | 0.3905 | 0.4311 | 0.4114 | 0.0185 | +| lichen | north | insample_spearman | 200 | 0.5199 | 0.4581 | 0.5773 | 0.5182 | 0.0534 | +| lichen | north | oob_auc | 198 | 0.8039 | 0.7636 | 0.8410 | 0.8021 | 0.0333 | +| lichen | north | oob_calibration_slope | 198 | 0.9760 | 0.9323 | 1.0323 | 0.9797 | 0.0398 | +| lichen | north | oob_deviance_explained | 198 | 0.1292 | 0.0853 | 0.1698 | 0.1284 | 0.0356 | +| lichen | north | oob_n | 200 | 2136.5000 | 2102.0000 | 2172.0000 | 2115.4300 | 214.7712 | +| lichen | north | oob_prevalence | 198 | 0.3841 | 0.3745 | 0.3945 | 0.3839 | 0.0076 | +| lichen | north | oob_rmse | 198 | 0.4153 | 0.3918 | 0.4350 | 0.4140 | 0.0186 | +| lichen | north | oob_spearman | 198 | 0.5109 | 0.4440 | 0.5747 | 0.5088 | 0.0560 | +| lichen | north | oob_v2val_Climate | 198 | 0.7084 | 0.6845 | 0.7263 | 0.7051 | 0.0168 | +| lichen | north | oob_v2val_Climate_Truncated | 198 | 0.7084 | 0.6845 | 0.7263 | 0.7051 | 0.0168 | +| lichen | north | oob_v2val_Full | 198 | 0.8039 | 0.7636 | 0.8410 | 0.8021 | 0.0333 | +| lichen | north | oob_v2val_Full_Joint | 198 | 0.8020 | 0.7631 | 0.8384 | 0.8006 | 0.0327 | +| lichen | north | oob_v2val_Full_Joint_Truncated | 198 | 0.8021 | 0.7631 | 0.8386 | 0.8007 | 0.0328 | +| lichen | north | oob_v2val_Full_Truncated | 198 | 0.8040 | 0.7638 | 0.8411 | 0.8021 | 0.0333 | +| lichen | north | oob_v2val_Landcover | 198 | 0.7459 | 0.6978 | 0.8174 | 0.7562 | 0.0508 | +| lichen | north | v2val_Climate | 200 | 0.7072 | 0.6898 | 0.7278 | 0.7085 | 0.0159 | +| lichen | north | v2val_Climate_Truncated | 200 | 0.7072 | 0.6898 | 0.7278 | 0.7085 | 0.0159 | +| lichen | north | v2val_Full | 200 | 0.8091 | 0.7720 | 0.8423 | 0.8075 | 0.0317 | +| lichen | north | v2val_Full_Joint | 200 | 0.8077 | 0.7715 | 0.8400 | 0.8061 | 0.0312 | +| lichen | north | v2val_Full_Joint_Truncated | 200 | 0.8077 | 0.7716 | 0.8402 | 0.8062 | 0.0313 | +| lichen | north | v2val_Full_Truncated | 200 | 0.8092 | 0.7718 | 0.8425 | 0.8075 | 0.0318 | +| lichen | north | v2val_Landcover | 200 | 0.7453 | 0.7048 | 0.8159 | 0.7581 | 0.0496 | +| lichen | south | insample_auc | 200 | 0.8072 | 0.7724 | 0.8287 | 0.8021 | 0.0232 | +| lichen | south | insample_calibration_slope | 200 | 0.9202 | 0.8580 | 1.0346 | 0.9299 | 0.0703 | +| lichen | south | insample_deviance_explained | 200 | 0.1751 | 0.0455 | 0.2520 | 0.1563 | 0.0871 | +| lichen | south | insample_n | 200 | 1482.5000 | 1459.0000 | 1509.0000 | 1491.0850 | 88.0622 | +| lichen | south | insample_prevalence | 200 | 0.1501 | 0.0887 | 0.2202 | 0.1537 | 0.0613 | +| lichen | south | insample_rmse | 200 | 0.3151 | 0.2719 | 0.3608 | 0.3162 | 0.0405 | +| lichen | south | insample_spearman | 200 | 0.3713 | 0.2697 | 0.4685 | 0.3709 | 0.0892 | +| lichen | south | oob_auc | 198 | 0.7929 | 0.7520 | 0.8241 | 0.7913 | 0.0286 | +| lichen | south | oob_calibration_slope | 198 | 0.8842 | 0.7349 | 1.0758 | 0.8967 | 0.1312 | +| lichen | south | oob_deviance_explained | 198 | 0.1669 | -0.0025 | 0.2428 | 0.1355 | 0.0992 | +| lichen | south | oob_n | 200 | 863.5000 | 837.0000 | 887.0000 | 854.9150 | 88.0622 | +| lichen | south | oob_prevalence | 198 | 0.1503 | 0.0880 | 0.2276 | 0.1554 | 0.0631 | +| lichen | south | oob_rmse | 198 | 0.3204 | 0.2710 | 0.3680 | 0.3203 | 0.0424 | +| lichen | south | oob_spearman | 198 | 0.3640 | 0.2520 | 0.4637 | 0.3594 | 0.0921 | +| lichen | south | oob_v2val_Climate | 198 | 0.7084 | 0.6845 | 0.7263 | 0.7051 | 0.0168 | +| lichen | south | oob_v2val_Climate_Truncated | 198 | 0.7084 | 0.6845 | 0.7263 | 0.7051 | 0.0168 | +| lichen | south | oob_v2val_Full | 198 | 0.7929 | 0.7520 | 0.8241 | 0.7913 | 0.0286 | +| lichen | south | oob_v2val_Full_Joint | 198 | 0.7932 | 0.7527 | 0.8219 | 0.7903 | 0.0270 | +| lichen | south | oob_v2val_Full_Joint_Truncated | 198 | 0.7932 | 0.7527 | 0.8219 | 0.7903 | 0.0270 | +| lichen | south | oob_v2val_Full_Truncated | 198 | 0.7929 | 0.7520 | 0.8241 | 0.7913 | 0.0286 | +| lichen | south | oob_v2val_Landcover | 198 | 0.7499 | 0.7160 | 0.7745 | 0.7475 | 0.0223 | +| lichen | south | v2val_Climate | 200 | 0.7072 | 0.6898 | 0.7278 | 0.7085 | 0.0159 | +| lichen | south | v2val_Climate_Truncated | 200 | 0.7072 | 0.6898 | 0.7278 | 0.7085 | 0.0159 | +| lichen | south | v2val_Full | 200 | 0.8072 | 0.7724 | 0.8287 | 0.8021 | 0.0232 | +| lichen | south | v2val_Full_Joint | 200 | 0.8057 | 0.7733 | 0.8261 | 0.8013 | 0.0213 | +| lichen | south | v2val_Full_Joint_Truncated | 200 | 0.8057 | 0.7733 | 0.8261 | 0.8013 | 0.0213 | +| lichen | south | v2val_Full_Truncated | 200 | 0.8072 | 0.7724 | 0.8287 | 0.8021 | 0.0232 | +| lichen | south | v2val_Landcover | 200 | 0.7520 | 0.7339 | 0.7705 | 0.7526 | 0.0143 | +| mammal_summer | north | insample_auc | 200 | 0.7195 | 0.6076 | 0.8295 | 0.7195 | 0.1048 | +| mammal_summer | north | insample_calibration_slope | 200 | 0.9415 | 0.7950 | 0.9994 | 0.9143 | 0.0790 | +| mammal_summer | north | insample_deviance_explained | 200 | 0.1457 | 0.0267 | 0.2897 | 0.1557 | 0.1242 | +| mammal_summer | north | insample_n | 200 | 2563.5000 | 2538.0000 | 2587.0000 | 2577.0800 | 149.9873 | +| mammal_summer | north | insample_prevalence | 200 | 0.2733 | 0.2209 | 0.3269 | 0.2735 | 0.0486 | +| mammal_summer | north | insample_rmse | 200 | 0.3850 | 0.3230 | 0.4431 | 0.3836 | 0.0575 | +| mammal_summer | north | insample_spearman | 200 | 0.3181 | 0.1570 | 0.4710 | 0.3152 | 0.1473 | +| mammal_summer | north | oob_auc | 198 | 0.7008 | 0.5803 | 0.8199 | 0.7002 | 0.1098 | +| mammal_summer | north | oob_calibration_slope | 198 | 0.8458 | 0.5527 | 0.9867 | 0.7990 | 0.1680 | +| mammal_summer | north | oob_deviance_explained | 198 | 0.0563 | 0.0013 | 0.2662 | 0.1234 | 0.1179 | +| mammal_summer | north | oob_n | 200 | 1489.5000 | 1466.0000 | 1515.0000 | 1475.9200 | 149.9873 | +| mammal_summer | north | oob_prevalence | 198 | 0.2735 | 0.2193 | 0.3287 | 0.2728 | 0.0485 | +| mammal_summer | north | oob_rmse | 198 | 0.3917 | 0.3259 | 0.4480 | 0.3883 | 0.0571 | +| mammal_summer | north | oob_spearman | 198 | 0.2890 | 0.1134 | 0.4545 | 0.2851 | 0.1566 | +| mammal_summer | south | insample_auc | 199 | 0.7546 | 0.6196 | 0.7995 | 0.7107 | 0.0791 | +| mammal_summer | south | insample_calibration_slope | 199 | 0.9613 | 0.8460 | 1.0524 | 0.9550 | 0.0819 | +| mammal_summer | south | insample_deviance_explained | 199 | 0.1647 | 0.0214 | 0.2324 | 0.1205 | 0.0943 | +| mammal_summer | south | insample_n | 199 | 674.0000 | 662.0000 | 689.0000 | 678.4171 | 40.4188 | +| mammal_summer | south | insample_prevalence | 199 | 0.2069 | 0.1750 | 0.6994 | 0.4351 | 0.2552 | +| mammal_summer | south | insample_rmse | 199 | 0.3563 | 0.3391 | 0.4250 | 0.3822 | 0.0389 | +| mammal_summer | south | insample_spearman | 199 | 0.3342 | 0.1592 | 0.3998 | 0.2818 | 0.1044 | +| mammal_summer | south | oob_auc | 197 | 0.7154 | 0.5675 | 0.7903 | 0.6784 | 0.0930 | +| mammal_summer | south | oob_calibration_slope | 197 | 0.7382 | 0.3358 | 1.0724 | 0.7360 | 0.2780 | +| mammal_summer | south | oob_deviance_explained | 197 | 0.0147 | -0.0349 | 0.2068 | 0.0619 | 0.1132 | +| mammal_summer | south | oob_n | 199 | 391.0000 | 376.0000 | 403.0000 | 386.5829 | 40.4188 | +| mammal_summer | south | oob_prevalence | 197 | 0.2300 | 0.1685 | 0.7076 | 0.4357 | 0.2560 | +| mammal_summer | south | oob_rmse | 197 | 0.3897 | 0.3411 | 0.4384 | 0.3914 | 0.0411 | +| mammal_summer | south | oob_spearman | 197 | 0.2707 | 0.0727 | 0.3889 | 0.2325 | 0.1292 | +| mammal_winter | north | insample_auc | 200 | 0.7665 | 0.6675 | 0.8446 | 0.7591 | 0.0814 | +| mammal_winter | north | insample_calibration_slope | 200 | 0.9541 | 0.8712 | 1.0110 | 0.9464 | 0.0554 | +| mammal_winter | north | insample_deviance_explained | 200 | 0.1900 | 0.0702 | 0.3056 | 0.1876 | 0.1090 | +| mammal_winter | north | insample_n | 200 | 2609.5000 | 2585.0000 | 2640.1000 | 2626.3900 | 152.6091 | +| mammal_winter | north | insample_prevalence | 200 | 0.1764 | 0.1455 | 0.2061 | 0.1760 | 0.0269 | +| mammal_winter | north | insample_rmse | 200 | 0.3161 | 0.2973 | 0.3353 | 0.3168 | 0.0164 | +| mammal_winter | north | insample_spearman | 200 | 0.3518 | 0.2111 | 0.4734 | 0.3443 | 0.1214 | +| mammal_winter | north | oob_auc | 198 | 0.7540 | 0.6364 | 0.8417 | 0.7404 | 0.0916 | +| mammal_winter | north | oob_calibration_slope | 198 | 0.8826 | 0.6191 | 1.0325 | 0.8552 | 0.1596 | +| mammal_winter | north | oob_deviance_explained | 198 | 0.0839 | 0.0080 | 0.2921 | 0.1494 | 0.1240 | +| mammal_winter | north | oob_n | 200 | 1517.5000 | 1486.9000 | 1542.0000 | 1500.6100 | 152.6091 | +| mammal_winter | north | oob_prevalence | 198 | 0.1742 | 0.1426 | 0.2060 | 0.1734 | 0.0271 | +| mammal_winter | north | oob_rmse | 198 | 0.3199 | 0.2972 | 0.3413 | 0.3193 | 0.0172 | +| mammal_winter | north | oob_spearman | 198 | 0.3263 | 0.1702 | 0.4645 | 0.3186 | 0.1319 | +| mammal_winter | south | insample_auc | 200 | 0.7315 | 0.6779 | 0.8331 | 0.7557 | 0.0673 | +| mammal_winter | south | insample_calibration_slope | 200 | 0.9493 | 0.8167 | 1.0904 | 0.9489 | 0.1093 | +| mammal_winter | south | insample_deviance_explained | 200 | 0.1130 | 0.0574 | 0.2652 | 0.1552 | 0.0897 | +| mammal_winter | south | insample_n | 200 | 695.0000 | 682.0000 | 709.0000 | 699.1600 | 41.4843 | +| mammal_winter | south | insample_prevalence | 200 | 0.3351 | 0.0822 | 0.6144 | 0.3449 | 0.2590 | +| mammal_winter | south | insample_rmse | 200 | 0.3196 | 0.2155 | 0.4099 | 0.3142 | 0.0927 | +| mammal_winter | south | insample_spearman | 200 | 0.3081 | 0.2774 | 0.3331 | 0.3064 | 0.0216 | +| mammal_winter | south | oob_auc | 198 | 0.7123 | 0.6520 | 0.8075 | 0.7227 | 0.0632 | +| mammal_winter | south | oob_calibration_slope | 198 | 0.7412 | 0.4709 | 1.0531 | 0.7570 | 0.2412 | +| mammal_winter | south | oob_deviance_explained | 198 | 0.0619 | 0.0061 | 0.1945 | 0.0691 | 0.1295 | +| mammal_winter | south | oob_n | 200 | 403.0000 | 389.0000 | 416.0000 | 398.8400 | 41.4843 | +| mammal_winter | south | oob_prevalence | 198 | 0.3423 | 0.0803 | 0.6235 | 0.3480 | 0.2608 | +| mammal_winter | south | oob_rmse | 198 | 0.3325 | 0.2222 | 0.4211 | 0.3238 | 0.0914 | +| mammal_winter | south | oob_spearman | 198 | 0.2687 | 0.2234 | 0.3096 | 0.2658 | 0.0350 | +| mite | north | insample_auc | 200 | 0.7415 | 0.6711 | 0.7964 | 0.7353 | 0.0572 | +| mite | north | insample_calibration_slope | 200 | 0.9839 | 0.8742 | 1.0308 | 0.9642 | 0.0621 | +| mite | north | insample_deviance_explained | 200 | 0.0588 | -0.0563 | 0.1372 | 0.0443 | 0.0839 | +| mite | north | insample_n | 200 | 3611.0000 | 3575.8000 | 3648.1000 | 3631.9500 | 211.3664 | +| mite | north | insample_prevalence | 200 | 0.1491 | 0.0931 | 0.2122 | 0.1518 | 0.0567 | +| mite | north | insample_rmse | 200 | 0.3256 | 0.2845 | 0.3667 | 0.3259 | 0.0384 | +| mite | north | insample_spearman | 200 | 0.2993 | 0.1746 | 0.4176 | 0.2962 | 0.1150 | +| mite | north | oob_auc | 198 | 0.7251 | 0.6397 | 0.7915 | 0.7189 | 0.0675 | +| mite | north | oob_calibration_slope | 198 | 0.9315 | 0.6371 | 1.0449 | 0.8882 | 0.1596 | +| mite | north | oob_deviance_explained | 198 | 0.0502 | -0.0980 | 0.1381 | 0.0288 | 0.0941 | +| mite | north | oob_n | 200 | 2100.0000 | 2062.9000 | 2135.2000 | 2079.0500 | 211.3664 | +| mite | north | oob_prevalence | 198 | 0.1509 | 0.0922 | 0.2141 | 0.1524 | 0.0568 | +| mite | north | oob_rmse | 198 | 0.3320 | 0.2860 | 0.3708 | 0.3290 | 0.0386 | +| mite | north | oob_spearman | 198 | 0.2784 | 0.1432 | 0.4123 | 0.2784 | 0.1237 | +| mite | north | oob_v2val_Climate | 198 | 0.6902 | 0.6270 | 0.7420 | 0.6865 | 0.0501 | +| mite | north | oob_v2val_Climate_Truncated | 198 | 0.6902 | 0.6270 | 0.7420 | 0.6865 | 0.0501 | +| mite | north | oob_v2val_Full | 198 | 0.7251 | 0.6397 | 0.7915 | 0.7189 | 0.0675 | +| mite | north | oob_v2val_Full_Joint | 198 | 0.7243 | 0.6393 | 0.7914 | 0.7186 | 0.0677 | +| mite | north | oob_v2val_Full_Joint_Truncated | 198 | 0.7243 | 0.6394 | 0.7914 | 0.7186 | 0.0676 | +| mite | north | oob_v2val_Full_Truncated | 198 | 0.7251 | 0.6398 | 0.7913 | 0.7188 | 0.0674 | +| mite | north | oob_v2val_Landcover | 198 | 0.6958 | 0.5964 | 0.7674 | 0.6853 | 0.0750 | +| mite | north | v2val_Climate | 200 | 0.6938 | 0.6397 | 0.7436 | 0.6922 | 0.0464 | +| mite | north | v2val_Climate_Truncated | 200 | 0.6938 | 0.6396 | 0.7436 | 0.6922 | 0.0464 | +| mite | north | v2val_Full | 200 | 0.7415 | 0.6711 | 0.7964 | 0.7353 | 0.0572 | +| mite | north | v2val_Full_Joint | 200 | 0.7411 | 0.6708 | 0.7961 | 0.7352 | 0.0574 | +| mite | north | v2val_Full_Joint_Truncated | 200 | 0.7411 | 0.6708 | 0.7961 | 0.7352 | 0.0574 | +| mite | north | v2val_Full_Truncated | 200 | 0.7414 | 0.6710 | 0.7964 | 0.7353 | 0.0572 | +| mite | north | v2val_Landcover | 200 | 0.7117 | 0.6394 | 0.7723 | 0.7069 | 0.0604 | +| mite | south | insample_auc | 200 | 0.7987 | 0.6949 | 0.8911 | 0.7952 | 0.0884 | +| mite | south | insample_calibration_slope | 200 | 0.7827 | 0.5943 | 1.0282 | 0.8015 | 0.1774 | +| mite | south | insample_deviance_explained | 200 | 0.0714 | -0.0206 | 0.2038 | 0.0867 | 0.0874 | +| mite | south | insample_n | 200 | 1492.5000 | 1471.0000 | 1516.1000 | 1501.9250 | 88.5699 | +| mite | south | insample_prevalence | 200 | 0.0681 | 0.0529 | 0.0865 | 0.0696 | 0.0144 | +| mite | south | insample_rmse | 200 | 0.2450 | 0.2088 | 0.2746 | 0.2431 | 0.0281 | +| mite | south | insample_spearman | 200 | 0.2518 | 0.1872 | 0.3139 | 0.2515 | 0.0542 | +| mite | south | oob_auc | 198 | 0.7758 | 0.6618 | 0.8935 | 0.7787 | 0.0971 | +| mite | south | oob_calibration_slope | 198 | 0.6830 | 0.5045 | 1.0690 | 0.7293 | 0.2066 | +| mite | south | oob_deviance_explained | 198 | 0.0527 | -0.0600 | 0.2229 | 0.0656 | 0.1095 | +| mite | south | oob_n | 200 | 870.5000 | 846.9000 | 892.0000 | 861.0750 | 88.5699 | +| mite | south | oob_prevalence | 198 | 0.0680 | 0.0520 | 0.0901 | 0.0702 | 0.0148 | +| mite | south | oob_rmse | 198 | 0.2468 | 0.2122 | 0.2827 | 0.2473 | 0.0274 | +| mite | south | oob_spearman | 198 | 0.2340 | 0.1528 | 0.3192 | 0.2377 | 0.0653 | +| mite | south | oob_v2val_Climate | 198 | 0.6902 | 0.6270 | 0.7420 | 0.6865 | 0.0501 | +| mite | south | oob_v2val_Climate_Truncated | 198 | 0.6902 | 0.6270 | 0.7420 | 0.6865 | 0.0501 | +| mite | south | oob_v2val_Full | 198 | 0.7758 | 0.6618 | 0.8935 | 0.7787 | 0.0971 | +| mite | south | oob_v2val_Full_Joint | 198 | 0.7761 | 0.6619 | 0.8938 | 0.7791 | 0.0972 | +| mite | south | oob_v2val_Full_Joint_Truncated | 198 | 0.7761 | 0.6619 | 0.8938 | 0.7791 | 0.0972 | +| mite | south | oob_v2val_Full_Truncated | 198 | 0.7758 | 0.6618 | 0.8935 | 0.7787 | 0.0971 | +| mite | south | oob_v2val_Landcover | 198 | 0.6739 | 0.6215 | 0.7295 | 0.6766 | 0.0400 | +| mite | south | v2val_Climate | 200 | 0.6938 | 0.6397 | 0.7436 | 0.6922 | 0.0464 | +| mite | south | v2val_Climate_Truncated | 200 | 0.6938 | 0.6396 | 0.7436 | 0.6922 | 0.0464 | +| mite | south | v2val_Full | 200 | 0.7987 | 0.6949 | 0.8911 | 0.7952 | 0.0884 | +| mite | south | v2val_Full_Joint | 200 | 0.7990 | 0.6953 | 0.8919 | 0.7956 | 0.0885 | +| mite | south | v2val_Full_Joint_Truncated | 200 | 0.7990 | 0.6953 | 0.8919 | 0.7956 | 0.0885 | +| mite | south | v2val_Full_Truncated | 200 | 0.7987 | 0.6949 | 0.8911 | 0.7952 | 0.0884 | +| mite | south | v2val_Landcover | 200 | 0.6921 | 0.6525 | 0.7356 | 0.6942 | 0.0329 | +| vascular_plant | north | insample_auc | 200 | 0.8328 | 0.8275 | 0.8378 | 0.8327 | 0.0042 | +| vascular_plant | north | insample_calibration_slope | 200 | 0.9892 | 0.9680 | 1.0125 | 0.9905 | 0.0170 | +| vascular_plant | north | insample_deviance_explained | 200 | 0.1656 | 0.1397 | 0.1936 | 0.1658 | 0.0210 | +| vascular_plant | north | insample_n | 200 | 4350.0000 | 4321.9000 | 4383.0000 | 4375.3700 | 253.0075 | +| vascular_plant | north | insample_prevalence | 200 | 0.3962 | 0.3735 | 0.4214 | 0.3976 | 0.0206 | +| vascular_plant | north | insample_rmse | 200 | 0.4020 | 0.3958 | 0.4080 | 0.4020 | 0.0047 | +| vascular_plant | north | insample_spearman | 200 | 0.5639 | 0.5550 | 0.5729 | 0.5636 | 0.0072 | +| vascular_plant | north | oob_auc | 198 | 0.8282 | 0.8186 | 0.8382 | 0.8282 | 0.0083 | +| vascular_plant | north | oob_calibration_slope | 198 | 0.9793 | 0.9252 | 1.0295 | 0.9764 | 0.0399 | +| vascular_plant | north | oob_deviance_explained | 198 | 0.1626 | 0.1196 | 0.2008 | 0.1599 | 0.0327 | +| vascular_plant | north | oob_n | 200 | 2524.0000 | 2491.0000 | 2552.1000 | 2498.6300 | 253.0075 | +| vascular_plant | north | oob_prevalence | 198 | 0.3937 | 0.3713 | 0.4251 | 0.3985 | 0.0225 | +| vascular_plant | north | oob_rmse | 198 | 0.4051 | 0.3960 | 0.4145 | 0.4050 | 0.0071 | +| vascular_plant | north | oob_spearman | 198 | 0.5570 | 0.5414 | 0.5706 | 0.5560 | 0.0128 | +| vascular_plant | north | oob_v2val_Climate | 198 | 0.6889 | 0.6788 | 0.6980 | 0.6887 | 0.0077 | +| vascular_plant | north | oob_v2val_Climate_Truncated | 198 | 0.6890 | 0.6788 | 0.6980 | 0.6887 | 0.0077 | +| vascular_plant | north | oob_v2val_Full | 198 | 0.8282 | 0.8186 | 0.8382 | 0.8282 | 0.0083 | +| vascular_plant | north | oob_v2val_Full_Joint | 198 | 0.8270 | 0.8155 | 0.8373 | 0.8268 | 0.0087 | +| vascular_plant | north | oob_v2val_Full_Joint_Truncated | 198 | 0.8272 | 0.8157 | 0.8374 | 0.8268 | 0.0087 | +| vascular_plant | north | oob_v2val_Full_Truncated | 198 | 0.8282 | 0.8187 | 0.8384 | 0.8282 | 0.0082 | +| vascular_plant | north | oob_v2val_Landcover | 198 | 0.8033 | 0.7927 | 0.8137 | 0.8036 | 0.0082 | +| vascular_plant | north | v2val_Climate | 200 | 0.6903 | 0.6846 | 0.6956 | 0.6903 | 0.0046 | +| vascular_plant | north | v2val_Climate_Truncated | 200 | 0.6903 | 0.6846 | 0.6956 | 0.6903 | 0.0046 | +| vascular_plant | north | v2val_Full | 200 | 0.8328 | 0.8275 | 0.8378 | 0.8327 | 0.0042 | +| vascular_plant | north | v2val_Full_Joint | 200 | 0.8314 | 0.8249 | 0.8370 | 0.8312 | 0.0047 | +| vascular_plant | north | v2val_Full_Joint_Truncated | 200 | 0.8315 | 0.8250 | 0.8370 | 0.8313 | 0.0047 | +| vascular_plant | north | v2val_Full_Truncated | 200 | 0.8329 | 0.8276 | 0.8377 | 0.8328 | 0.0042 | +| vascular_plant | north | v2val_Landcover | 200 | 0.8077 | 0.8018 | 0.8141 | 0.8080 | 0.0048 | +| vascular_plant | south | insample_auc | 200 | 0.8496 | 0.8025 | 0.8978 | 0.8500 | 0.0416 | +| vascular_plant | south | insample_calibration_slope | 200 | 0.9564 | 0.9107 | 0.9952 | 0.9536 | 0.0316 | +| vascular_plant | south | insample_deviance_explained | 200 | 0.2665 | 0.1598 | 0.3861 | 0.2718 | 0.0952 | +| vascular_plant | south | insample_n | 200 | 1674.0000 | 1652.0000 | 1698.1000 | 1683.8950 | 98.6476 | +| vascular_plant | south | insample_prevalence | 200 | 0.2431 | 0.2173 | 0.2692 | 0.2430 | 0.0219 | +| vascular_plant | south | insample_rmse | 200 | 0.3493 | 0.3072 | 0.3835 | 0.3459 | 0.0344 | +| vascular_plant | south | insample_spearman | 200 | 0.5166 | 0.4618 | 0.5723 | 0.5173 | 0.0472 | +| vascular_plant | south | oob_auc | 198 | 0.8408 | 0.7938 | 0.8962 | 0.8438 | 0.0428 | +| vascular_plant | south | oob_calibration_slope | 198 | 0.9330 | 0.8603 | 1.0131 | 0.9369 | 0.0606 | +| vascular_plant | south | oob_deviance_explained | 198 | 0.2357 | 0.1368 | 0.3882 | 0.2562 | 0.0968 | +| vascular_plant | south | oob_n | 200 | 974.0000 | 949.9000 | 996.0000 | 964.1050 | 98.6476 | +| vascular_plant | south | oob_prevalence | 198 | 0.2453 | 0.2136 | 0.2763 | 0.2436 | 0.0247 | +| vascular_plant | south | oob_rmse | 198 | 0.3523 | 0.3086 | 0.3883 | 0.3502 | 0.0344 | +| vascular_plant | south | oob_spearman | 198 | 0.5059 | 0.4492 | 0.5736 | 0.5083 | 0.0495 | +| vascular_plant | south | oob_v2val_Climate | 198 | 0.6889 | 0.6788 | 0.6980 | 0.6887 | 0.0077 | +| vascular_plant | south | oob_v2val_Climate_Truncated | 198 | 0.6890 | 0.6788 | 0.6980 | 0.6887 | 0.0077 | +| vascular_plant | south | oob_v2val_Full | 198 | 0.8408 | 0.7938 | 0.8962 | 0.8438 | 0.0428 | +| vascular_plant | south | oob_v2val_Full_Joint | 198 | 0.8371 | 0.7904 | 0.8903 | 0.8392 | 0.0413 | +| vascular_plant | south | oob_v2val_Full_Joint_Truncated | 198 | 0.8371 | 0.7904 | 0.8903 | 0.8391 | 0.0413 | +| vascular_plant | south | oob_v2val_Full_Truncated | 198 | 0.8408 | 0.7938 | 0.8962 | 0.8438 | 0.0428 | +| vascular_plant | south | oob_v2val_Landcover | 198 | 0.7754 | 0.7521 | 0.8003 | 0.7766 | 0.0186 | +| vascular_plant | south | v2val_Climate | 200 | 0.6903 | 0.6846 | 0.6956 | 0.6903 | 0.0046 | +| vascular_plant | south | v2val_Climate_Truncated | 200 | 0.6903 | 0.6846 | 0.6956 | 0.6903 | 0.0046 | +| vascular_plant | south | v2val_Full | 200 | 0.8496 | 0.8025 | 0.8978 | 0.8500 | 0.0416 | +| vascular_plant | south | v2val_Full_Joint | 200 | 0.8441 | 0.8002 | 0.8908 | 0.8451 | 0.0397 | +| vascular_plant | south | v2val_Full_Joint_Truncated | 200 | 0.8441 | 0.8001 | 0.8908 | 0.8451 | 0.0397 | +| vascular_plant | south | v2val_Full_Truncated | 200 | 0.8496 | 0.8025 | 0.8978 | 0.8500 | 0.0416 | +| vascular_plant | south | v2val_Landcover | 200 | 0.7822 | 0.7595 | 0.8038 | 0.7817 | 0.0174 | diff --git a/3_output/exp_000_parity_v2/tables/coverage.csv b/3_output/exp_000_parity_v2/tables/coverage.csv index cc2de87..30d8940 100644 --- a/3_output/exp_000_parity_v2/tables/coverage.csv +++ b/3_output/exp_000_parity_v2/tables/coverage.csv @@ -1,15 +1,15 @@ taxon,run,region,season,part,species,draws,stages,has_coefficients,has_grid -bird,bird,north,,,2,5,"climate, landcover, habitat",TRUE,TRUE -bird,bird,south,,,2,5,"climate, landcover, habitat",TRUE,TRUE -bryophyte,bryophyte,north,,,2,5,"climate, habitat",TRUE,TRUE -bryophyte,bryophyte,south,,,2,5,"climate, habitat",TRUE,TRUE -lichen,lichen,north,,,2,5,"climate, habitat",TRUE,TRUE -lichen,lichen,south,,,2,5,"climate, habitat",TRUE,TRUE -mammal,mammal_summer,north,summer,hurdle,2,5,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE -mammal,mammal_summer,south,summer,hurdle,2,5,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE -mammal,mammal_winter,north,winter,hurdle,2,5,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE -mammal,mammal_winter,south,winter,hurdle,2,5,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE -mite,mite,north,,,2,5,"climate, habitat",TRUE,TRUE -mite,mite,south,,,2,5,"climate, habitat",TRUE,TRUE -vascular_plant,vascular_plant,north,,,2,5,"climate, habitat",TRUE,TRUE -vascular_plant,vascular_plant,south,,,2,5,"climate, habitat",TRUE,TRUE +bird,bird,north,,,2,100,"climate, landcover, habitat",TRUE,TRUE +bird,bird,south,,,2,100,"climate, landcover, habitat",TRUE,TRUE +bryophyte,bryophyte,north,,,2,100,"climate, habitat",TRUE,TRUE +bryophyte,bryophyte,south,,,2,100,"climate, habitat",TRUE,TRUE +lichen,lichen,north,,,2,100,"climate, habitat",TRUE,TRUE +lichen,lichen,south,,,2,100,"climate, habitat",TRUE,TRUE +mammal,mammal_summer,north,summer,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_summer,south,summer,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_winter,north,winter,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_winter,south,winter,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mite,mite,north,,,2,100,"climate, habitat",TRUE,TRUE +mite,mite,south,,,2,100,"climate, habitat",TRUE,TRUE +vascular_plant,vascular_plant,north,,,2,100,"climate, habitat",TRUE,TRUE +vascular_plant,vascular_plant,south,,,2,100,"climate, habitat",TRUE,TRUE diff --git a/3_output/exp_000_parity_v2/tables/grid_summary.csv b/3_output/exp_000_parity_v2/tables/grid_summary.csv index 2c15e38..31c4e7b 100644 --- a/3_output/exp_000_parity_v2/tables/grid_summary.csv +++ b/3_output/exp_000_parity_v2/tables/grid_summary.csv @@ -1,945 +1,945 @@ taxon,run,region,season,part,species,grid_unit,n,median,p10,p90,boot1,mean,sd -bird,bird,north,,,AMRO,SpruceR,5,0.0460214970922903,0.0454744611146199,0.0478061585686823,0.0460214970922903,0.0464553702378501,0.00127197102591019 -bird,bird,north,,,AMRO,Spruce1,5,0.0336956807487701,0.0322810241650681,0.0345043254597905,0.0348507381455713,0.0334501194856929,0.00111752698926678 -bird,bird,north,,,AMRO,Spruce2,5,0.029967501134538,0.028689533256257,0.0309030506053303,0.0314691851923315,0.0298058122210272,0.00115338472906637 -bird,bird,north,,,AMRO,Spruce3,5,0.0258465915567713,0.0248847311078244,0.0269161638569105,0.0275986396962082,0.0258442666230429,0.00110362371041956 -bird,bird,north,,,AMRO,Spruce4,5,0.0234032880077339,0.0227504665773472,0.0245509472534085,0.0252157131909561,0.0235452704143634,0.00100329299043297 -bird,bird,north,,,AMRO,Spruce5,5,0.021731186122784,0.0213608104410011,0.0229344203019209,0.0235320177392087,0.0220072737052839,0.000897599585942329 -bird,bird,north,,,AMRO,Spruce6,5,0.0205987834958812,0.0203164427428931,0.0217537403151274,0.0222602046395292,0.0209098073999222,0.000807535567378126 -bird,bird,north,,,AMRO,Spruce7,5,0.0200852925184205,0.0194255140428591,0.0208590897859755,0.0212606901038818,0.0201004990260241,0.000749493164941381 -bird,bird,north,,,AMRO,Spruce8,5,0.0197353820173931,0.0187353929181975,0.020184041325968,0.0204546292796539,0.0194949645525674,0.000737409567340656 -bird,bird,north,,,AMRO,PineR,5,0.055663430449507,0.0543192030149498,0.0562118535015652,0.0535435973650151,0.0554222551033113,0.00109941804600945 -bird,bird,north,,,AMRO,Pine1,5,0.0400367096048969,0.0393476184649974,0.0404105539729648,0.0405470054004968,0.0398971042060573,0.000533927985762279 -bird,bird,north,,,AMRO,Pine2,5,0.0356069417161638,0.0348465927331193,0.0362895221196775,0.0366127459514038,0.0355486479216501,0.000734768131510243 -bird,bird,north,,,AMRO,Pine3,5,0.0307105378920888,0.0301269732104456,0.0316527175268143,0.0321095693334898,0.0308232640754777,0.000810293506935437 -bird,bird,north,,,AMRO,Pine4,5,0.0278758021291746,0.027484805318442,0.0288506206173034,0.0293371593640406,0.02808218595386,0.000767241565317905 -bird,bird,north,,,AMRO,Pine5,5,0.0261879900411373,0.0256371542993188,0.0269648161579907,0.0273782680404298,0.0262492756503036,0.000708980982835126 -bird,bird,north,,,AMRO,Pine6,5,0.0247842187753593,0.0243295516540588,0.0256818169038513,0.0258985802241854,0.0249420574021771,0.000679984539350903 -bird,bird,north,,,AMRO,Pine7,5,0.0237257385224398,0.0233340026010986,0.0247312486059623,0.0247356975011427,0.0239786994144854,0.000706043794957849 -bird,bird,north,,,AMRO,Pine8,5,0.0229103307685888,0.022572936039687,0.0241270556938794,0.0237978880218547,0.0232585155386345,0.000793690250372404 -bird,bird,north,,,AMRO,DecidR,5,0.0229559115592863,0.0221306044429141,0.0235352610263104,0.0237579890560399,0.0228382610280493,0.000702614250549723 -bird,bird,north,,,AMRO,Decid1,5,0.030553448874834,0.0298317579364032,0.031292026146399,0.0315584625182446,0.0305372824644636,0.000731937077174177 -bird,bird,north,,,AMRO,Decid2,5,0.0321828552741194,0.0315537397610501,0.0329318625383302,0.0331998686079368,0.0322057305060789,0.000695310231250941 -bird,bird,north,,,AMRO,Decid3,5,0.0324092194941181,0.031901614565924,0.0331074352588107,0.0333598077618143,0.0324673474226511,0.000609213373089749 -bird,bird,north,,,AMRO,Decid4,5,0.0309081262409317,0.0304692552537095,0.0315217987870488,0.0317500403920757,0.0309728473938434,0.000540903174694158 -bird,bird,north,,,AMRO,Decid5,5,0.0286739687567556,0.0282544017321468,0.0291788293287055,0.0293809707313715,0.0287147521596427,0.000501576553529028 -bird,bird,north,,,AMRO,Decid6,5,0.026263369067971,0.0256592232040337,0.0265292756315766,0.0267049789894919,0.0261396737871554,0.000487038563065855 -bird,bird,north,,,AMRO,Decid7,5,0.0235829355542547,0.022996829053316,0.0238783254234698,0.0239651842606415,0.0234890258373333,0.000486787939794446 -bird,bird,north,,,AMRO,Decid8,5,0.0209712010709133,0.020405623716483,0.0212840394420598,0.0212996862068994,0.0209009094923812,0.000490950705287533 -bird,bird,north,,,AMRO,MixedwoodR,5,0.0216440418420787,0.0214366764666218,0.0229103918922939,0.0235968351556159,0.0220089762264377,0.000908464817530186 -bird,bird,north,,,AMRO,Mixedwood1,5,0.0291224189433723,0.0286974308645267,0.0305147340021009,0.0313443968700871,0.0294293794567081,0.0010999235629169 -bird,bird,north,,,AMRO,Mixedwood2,5,0.0306755089393133,0.0302969705278782,0.0321556893179631,0.0329746690631811,0.0310373758199453,0.00111497918591993 -bird,bird,north,,,AMRO,Mixedwood3,5,0.0308912709528129,0.030589685080101,0.0323492807237952,0.0331335233264806,0.0312892785989983,0.00106272343336921 -bird,bird,north,,,AMRO,Mixedwood4,5,0.0295710415430225,0.0291898679692672,0.0307877153702325,0.0315346752432942,0.0298485867463704,0.000975648708630527 -bird,bird,north,,,AMRO,Mixedwood5,5,0.0274075295438599,0.0270457330870442,0.0285447239533767,0.0291816753271841,0.0276719693316288,0.000884980899063123 -bird,bird,north,,,AMRO,Mixedwood6,5,0.0248744913880928,0.024598727956784,0.0260231600770452,0.0265238352270822,0.0251899056928364,0.000802290447826292 -bird,bird,north,,,AMRO,Mixedwood7,5,0.0223638470242142,0.0220520253761532,0.0234214558496831,0.0238026249249641,0.0226350829214757,0.000731084140709001 -bird,bird,north,,,AMRO,Mixedwood8,5,0.0199126764372763,0.0195738570800957,0.0208756562752855,0.0211552073327846,0.0201406033213722,0.000670966355515117 -bird,bird,north,,,AMRO,TreedBogR,5,0.0331850952367972,0.0319507285402324,0.0343298174584785,0.0320053956170601,0.0331519445129201,0.00118442927359984 -bird,bird,north,,,AMRO,TreedBog1,5,0.0441859758905737,0.04277191207391,0.0459514038332503,0.0425137445589404,0.0443337761762291,0.00156198810108254 -bird,bird,north,,,AMRO,TreedBog2,5,0.0465280988683981,0.0450759279854423,0.0485442094151598,0.0447249523823355,0.0467597382128024,0.00170719065750671 -bird,bird,north,,,AMRO,TreedBog3,5,0.0468127655397305,0.0453501172953296,0.0491179865619394,0.0449404132061633,0.0471460379457872,0.00186526187035362 -bird,bird,north,,,AMRO,TreedBog4,5,0.0445965703925972,0.0431609344939285,0.0470359967670578,0.0427718272455254,0.0449814750753084,0.00192768335450474 -bird,bird,north,,,AMRO,TreedBog5,5,0.0413013718566653,0.0399132456880923,0.043776679654854,0.0395803529352897,0.0417070190418488,0.00193042065727443 -bird,bird,north,,,AMRO,TreedBog6,5,0.0375650211610718,0.03623802297114,0.0400079459227759,0.0359754108602334,0.0379711836795942,0.0018921239404454 -bird,bird,north,,,AMRO,TreedBog7,5,0.0337311435879773,0.032474706589339,0.0360937692651888,0.0322845170729035,0.0341246159398247,0.00182499536957324 -bird,bird,north,,,AMRO,TreedBog8,5,0.0299955276096956,0.0288159490396316,0.0322449753172705,0.028693711490609,0.0303679835711985,0.00173785947843209 -bird,bird,north,,,AMRO,TreedFenR,5,0.0422645144129336,0.0411206711160944,0.0444612609388868,0.0416408069894085,0.0426593947598897,0.00168457584655721 -bird,bird,north,,,AMRO,TreedFen1,5,0.0567852320289917,0.0546993980136261,0.0595487401346133,0.0553127557852217,0.057053309735497,0.00238325844479936 -bird,bird,north,,,AMRO,TreedFen2,5,0.0601053333210814,0.057576793915605,0.062801721494816,0.0581896606449257,0.0601748343893455,0.0025620770336273 -bird,bird,north,,,AMRO,TreedFen3,5,0.061004684620066,0.0578987833513519,0.0632661157627814,0.0584699872088007,0.0606684764795377,0.00263876467136345 -bird,bird,north,,,AMRO,TreedFen4,5,0.0585750472403725,0.0551364039392565,0.060286084605513,0.0556485357726957,0.0578783628836603,0.002555165865925 -bird,bird,north,,,AMRO,TreedFen5,5,0.0546495586388256,0.0510462396551786,0.0558163205477266,0.0514962494721526,0.053660035636928,0.00240507475761092 -bird,bird,north,,,AMRO,TreedFen6,5,0.0499841351763957,0.0464156762019834,0.0507663812147309,0.0468060185201128,0.0488485601936305,0.0022298132966526 -bird,bird,north,,,AMRO,TreedFen7,5,0.0447008747250632,0.0416684838734553,0.0457440880993633,0.0420039595905649,0.0438953797644894,0.00204991323315053 -bird,bird,north,,,AMRO,TreedFen8,5,0.0395694346049872,0.0370458190070238,0.0408183339762998,0.0373321210050387,0.0390587727531739,0.00187548466068124 -bird,bird,north,,,AMRO,GrassHerb,5,0.0391157074651561,0.0374665801039995,0.0407064521459671,0.0414109112421211,0.0390437971413913,0.0016402212390184 -bird,bird,north,,,AMRO,Shrub,5,0.0242992189479925,0.0228825094225992,0.0246776245457063,0.0249051907368317,0.0238911541881936,0.000924348597764569 -bird,bird,north,,,AMRO,GraminoidFen,5,0.0240253006082896,0.0229416430615678,0.0249398229795977,0.0240253006082896,0.023983448309286,0.000993958517209816 -bird,bird,north,,,AMRO,Marsh,5,0.0190409138857816,0.0176773805870109,0.0216818753326244,0.0201855790618525,0.0195090503185658,0.00208856238176789 -bird,bird,north,,,AMRO,RoughP,5,0.0284487010336342,0.0273540658384352,0.029100651467195,0.0283163935552878,0.028312104577748,0.000976790108762144 -bird,bird,north,,,AMRO,TameP,5,0.0337677662581705,0.0332118392222873,0.036508679760649,0.037370361410168,0.0345916414986334,0.00176937305868641 -bird,bird,north,,,AMRO,Crop,5,0.0303304446509559,0.0292521806779319,0.0312352000249702,0.0316675460758044,0.0302312594816356,0.00100540739345621 -bird,bird,north,,,AMRO,Industrial,5,0.0347264320174887,0.033312971177683,0.0355682981118906,0.0357679771660033,0.0344866786749583,0.00111665066023152 -bird,bird,north,,,AMRO,Mine,5,0.0436153300361437,0.0381990210765919,0.0459245387062479,0.0436153300361437,0.0423961825295189,0.00389106674125516 -bird,bird,north,,,AMRO,Rural,5,0.0396443515023387,0.038005707047867,0.0414176232218955,0.041757773007241,0.0396782863611264,0.0016777934772785 -bird,bird,north,,,AMRO,Urban,5,0.0403436023988292,0.0374075928778925,0.0427692941093427,0.0377072326980573,0.040094022635699,0.00264783886461812 -bird,bird,north,,,AMRO,CCSpruceR,5,0.0464207068040547,0.0457292776866576,0.0488055453828144,0.0464207068040547,0.0470442907734406,0.00167197396263071 -bird,bird,north,,,AMRO,CCSpruce1,5,0.0334382471003622,0.0328903186279197,0.0349792099606696,0.0351307392341287,0.0338342587671066,0.00104802117766549 -bird,bird,north,,,AMRO,CCSpruce2,5,0.0297844962219075,0.0291681742313691,0.0312403869295451,0.0316709611104685,0.0300774692961451,0.00106585636584408 -bird,bird,north,,,AMRO,CCSpruce3,5,0.0257839800291967,0.0250483982402682,0.0270314998715563,0.0276685704867883,0.0259369345988329,0.00106777390956264 -bird,bird,north,,,AMRO,CCSpruce4,5,0.0233883758956751,0.0227898099129418,0.0245785085975324,0.0252324884758929,0.0235674959495998,0.000996700398796307 -bird,bird,north,,,AMRO,CCPineR,5,0.0556588717866301,0.0544149295122647,0.058052743467746,0.0540080569202541,0.0561277724704085,0.00180666291382705 -bird,bird,north,,,AMRO,CCPine1,5,0.0402344808099467,0.0399196288909847,0.0408216202332076,0.0408727719768734,0.040357160451343,0.00046025801408057 -bird,bird,north,,,AMRO,CCPine2,5,0.0358025164520706,0.0354021820907293,0.0364721654805386,0.0368475016460527,0.0358739771129343,0.000590299549843217 -bird,bird,north,,,AMRO,CCPine3,5,0.0306877354469581,0.0303682798458408,0.0317012367664505,0.0321909301394351,0.0309342419940114,0.000755692302324986 -bird,bird,north,,,AMRO,CCPine4,5,0.0279566387258189,0.0275081026095794,0.0288622599803365,0.0293566765279551,0.0281088057786237,0.000758937295851063 -bird,bird,north,,,AMRO,CCDecidR,5,0.0235157538328627,0.0220205659375402,0.0240398063704617,0.0239640757885976,0.0231324711414825,0.00101843877053024 -bird,bird,north,,,AMRO,CCDecid1,5,0.0311469864460262,0.0297314532115381,0.0318112029859532,0.031776862556441,0.0308482456975221,0.00104616123097925 -bird,bird,north,,,AMRO,CCDecid2,5,0.0325949076990241,0.0314791572519253,0.0332838607667157,0.0333516171167642,0.0324211482728123,0.000897113117886519 -bird,bird,north,,,AMRO,CCDecid3,5,0.0325265668622635,0.0318777585482393,0.033207441139438,0.0334030551273305,0.0325285168793225,0.00065734364091383 -bird,bird,north,,,AMRO,CCDecid4,5,0.0309528425918292,0.0304601698476958,0.0315598462965716,0.0317664981841116,0.0309961301025662,0.000557779201706145 -bird,bird,north,,,AMRO,CCMixedwoodR,5,0.0224136935821678,0.0213872957159068,0.0232466535727542,0.0238015239718475,0.0222860528997309,0.000988289616189019 -bird,bird,north,,,AMRO,CCMixedwood1,5,0.0296185552493973,0.0288303211553137,0.0308120520947235,0.0315613154690116,0.0297222065212846,0.00110977637889517 -bird,bird,north,,,AMRO,CCMixedwood2,5,0.0308728597959445,0.0305223049649659,0.0323025377803166,0.033125388239769,0.0312402265656467,0.00108688467332021 -bird,bird,north,,,AMRO,CCMixedwood3,5,0.0310031221297793,0.0306928887240712,0.0323595803262164,0.033176477338817,0.0313468792258484,0.00104120784061213 -bird,bird,north,,,AMRO,CCMixedwood4,5,0.0295708962308159,0.0292462349147995,0.0307916306804173,0.0315510213997294,0.0298705111701574,0.00096556171349458 -bird,bird,north,,,AMRO,ShrubbySwamp,5,0.0280532806155646,0.0272120492548132,0.0304723043995906,0.0293807705242182,0.028642432626409,0.00168768533141114 -bird,bird,north,,,AMRO,ShrubbyBog,5,0.0312066411236273,2.39623255235884e-06,0.0912997718305207,0.0987592495876081,0.0420163327688555,0.0456017647742937 -bird,bird,north,,,AMRO,ShrubbyFen,5,0.0199096452985301,0.0173227067986502,0.0204962269519268,0.0179711671460881,0.0191153200531081,0.00163113398716313 -bird,bird,north,,,AMRO,TreedSwamp,5,0.0150538387752528,0.0144236036440235,0.0158664078264896,0.0147780567655432,0.0151226098591078,0.000732979915113703 -bird,bird,north,,,YEWA,SpruceR,5,0.0258559745060982,0.0234403345263018,0.0260111209530433,0.0244391479557886,0.0250156649200479,0.00141587922713189 -bird,bird,north,,,YEWA,Spruce1,5,0.0228379925381185,0.0217902474136419,0.0235046389346874,0.0217244417914461,0.0226588624294516,0.000867039120790799 -bird,bird,north,,,YEWA,Spruce2,5,0.0202131466194631,0.0195276592826221,0.0212015763249332,0.0191951189565087,0.0203300867521231,0.000872220968316701 -bird,bird,north,,,YEWA,Spruce3,5,0.0152260266705766,0.014857155524532,0.0172302414914592,0.0147168214368909,0.015884604119312,0.00122343184525584 -bird,bird,north,,,YEWA,Spruce4,5,0.0111004447615773,0.011013191632923,0.0132562242110949,0.0110142694942302,0.0119062108855284,0.0011988279728585 -bird,bird,north,,,YEWA,Spruce5,5,0.00804666353131241,0.00782404584193233,0.00956383307230264,0.00804666353131241,0.00855088083029275,0.000905640135543961 -bird,bird,north,,,YEWA,Spruce6,5,0.00573844799961777,0.00536607662283719,0.00647092405422643,0.00573844799961777,0.00588369887690215,0.000555796810229676 -bird,bird,north,,,YEWA,Spruce7,5,0.0039947676530843,0.0035660316198102,0.00416241768282985,0.0039947676530843,0.00388279318439441,0.00030409785039464 -bird,bird,north,,,YEWA,Spruce8,5,0.00235082179047476,0.00227361425460549,0.00270649382245452,0.00271460762119826,0.00246262309860069,0.000223214918491482 -bird,bird,north,,,YEWA,PineR,5,0.0205785305776538,0.016318274681477,0.0214352987031151,0.0205785305776538,0.019217883621867,0.00262425459458988 -bird,bird,north,,,YEWA,Pine1,5,0.0182926626777856,0.0153708906689175,0.01895474719957,0.0182926626777856,0.0173660023342792,0.00184714292249953 -bird,bird,north,,,YEWA,Pine2,5,0.0161628933669374,0.0141454379072083,0.0166341234332659,0.0161628933669374,0.0155489855935594,0.00126842607226756 -bird,bird,north,,,YEWA,Pine3,5,0.0123056049633671,0.0114779279888745,0.0125556597430834,0.0123920261251661,0.0121106264069309,0.000641272645106542 -bird,bird,north,,,YEWA,Pine4,5,0.00925626382247502,0.00858692715044315,0.00939389903902125,0.00927436103695466,0.00906124080178095,0.000445903613405282 -bird,bird,north,,,YEWA,Pine5,5,0.00657162382380723,0.00614692336606859,0.00680475100874576,0.0067755435593238,0.00650526021516012,0.000331932489863419 -bird,bird,north,,,YEWA,Pine6,5,0.00453218358829318,0.00422748241429677,0.00472061781142898,0.00483195354609082,0.00448089947179597,0.000253288198947572 -bird,bird,north,,,YEWA,Pine7,5,0.00285709675383384,0.00277596123213307,0.00323273918784264,0.00336371989925068,0.00296438042813188,0.000247212233446868 -bird,bird,north,,,YEWA,Pine8,5,0.00182760895381318,0.00166130029618671,0.00216184116705074,0.00228578492344407,0.00188735457061119,0.000259401049664766 -bird,bird,north,,,YEWA,DecidR,5,0.067934626437015,0.0674576672463633,0.0729195663394245,0.067934626437015,0.0695161849099952,0.00337617618393999 -bird,bird,north,,,YEWA,Decid1,5,0.0765302527003605,0.0753508333805385,0.0809224163873259,0.0757433785005077,0.0775653404553756,0.0034849797906858 -bird,bird,north,,,YEWA,Decid2,5,0.0831933705848618,0.0821163970415955,0.0879817188793552,0.0824551590396893,0.084437018083834,0.00354655002105156 -bird,bird,north,,,YEWA,Decid3,5,0.0909542914829032,0.0906172695168214,0.09667461567637,0.0909542914829032,0.0929168749649886,0.00348284090180142 -bird,bird,north,,,YEWA,Decid4,5,0.0911816141264914,0.0902820435873628,0.0960411655989214,0.0911816141264914,0.0926283291485939,0.00310481576821379 -bird,bird,north,,,YEWA,Decid5,5,0.0830749476256945,0.0815385432720113,0.0862567937273009,0.0830749476256945,0.0836509205612147,0.00245302779264785 -bird,bird,north,,,YEWA,Decid6,5,0.0684511157991116,0.0668156484857424,0.0701683129834214,0.0687878278508456,0.0684357600162802,0.00175553578959361 -bird,bird,north,,,YEWA,Decid7,5,0.0502439884002606,0.0495409659411423,0.052147813318469,0.0517644774974931,0.0507231692666107,0.00130741350672055 -bird,bird,north,,,YEWA,Decid8,5,0.0339005594888284,0.0329378261237809,0.0352547173481443,0.0354022441617264,0.0340630233668366,0.00114017049560887 -bird,bird,north,,,YEWA,MixedwoodR,5,0.0321181710498639,0.0319864486524918,0.0343492759912242,0.0321181710498639,0.0329514089784471,0.00125801887647939 -bird,bird,north,,,YEWA,Mixedwood1,5,0.0361186343792291,0.0357543657081755,0.0381193002267473,0.0358099972600774,0.0367664871038007,0.00122372290033736 -bird,bird,north,,,YEWA,Mixedwood2,5,0.0396578845880583,0.0389647638764836,0.0412876201913861,0.0389831966535626,0.0400235347483558,0.00116873050229461 -bird,bird,north,,,YEWA,Mixedwood3,5,0.044161071804344,0.0430114778126448,0.0450311260127699,0.0430014212895615,0.0440431761917261,0.00100387518506072 -bird,bird,north,,,YEWA,Mixedwood4,5,0.0442351820713005,0.0430824404362304,0.0445653556762868,0.0431088950173672,0.0439072599866513,0.000761025409505987 -bird,bird,north,,,YEWA,Mixedwood5,5,0.0398578791525603,0.0391443456983723,0.0400558611174636,0.0392762206512514,0.0396532399203009,0.000461594422361296 -bird,bird,north,,,YEWA,Mixedwood6,5,0.0324703166414877,0.032179685405207,0.0326999878711223,0.0325215480961012,0.0324424353965295,0.000268202474568964 -bird,bird,north,,,YEWA,Mixedwood7,5,0.0239356684881771,0.0236920166090268,0.0244336977342141,0.0244732389028849,0.0240472848311377,0.00037626223519239 -bird,bird,north,,,YEWA,Mixedwood8,5,0.0161253113583632,0.0156693072501918,0.0166180780337648,0.0167374929865786,0.0161502413826242,0.000485932289158991 -bird,bird,north,,,YEWA,TreedBogR,5,0.011556676565964,0.0106150734211072,0.015167132081919,0.0131547525960213,0.0125010321176789,0.00246609868223356 -bird,bird,north,,,YEWA,TreedBog1,5,0.0130294668017344,0.0118161055388771,0.0168577424412391,0.0146668268778186,0.0139449259066216,0.00270635025396768 -bird,bird,north,,,YEWA,TreedBog2,5,0.0143062189240542,0.0128370960433458,0.0182880974231299,0.0159664853451186,0.0151767961731582,0.00290241602990773 -bird,bird,north,,,YEWA,TreedBog3,5,0.0159307025000537,0.0140854433394799,0.0200138051382188,0.0176122437813552,0.0166943895130734,0.00311323961347103 -bird,bird,north,,,YEWA,TreedBog4,5,0.0159574371006158,0.0140225317629725,0.0198790018140412,0.0176562621751068,0.0166376260902294,0.00304031786082071 -bird,bird,north,,,YEWA,TreedBog5,5,0.0143783651328877,0.0126656720514962,0.0179214155743405,0.0160865002173325,0.0150221957500339,0.00270292011233113 -bird,bird,north,,,YEWA,TreedBog6,5,0.0116539735513248,0.0103793735442064,0.0146647056806911,0.0133199651555387,0.012288662885541,0.00219011143934681 -bird,bird,north,,,YEWA,TreedBog7,5,0.00849682553839672,0.00771705937769765,0.0108920493747369,0.0100235907733028,0.00910814502782403,0.00162151072877657 -bird,bird,north,,,YEWA,TreedBog8,5,0.00557259559451445,0.00520557300073712,0.00734335343414964,0.00685523403478533,0.00611717440175423,0.00110087226572051 -bird,bird,north,,,YEWA,TreedFenR,5,0.0236371088398181,0.0172768808475891,0.024924502499633,0.0236371088398181,0.0216232860603613,0.00391878121541672 -bird,bird,north,,,YEWA,TreedFen1,5,0.0263540785518553,0.0192542019396591,0.0279298914574923,0.0263540785518553,0.0241380888094778,0.00443627285396668 -bird,bird,north,,,YEWA,TreedFen2,5,0.0286893690426434,0.0209405142100181,0.0305054446689458,0.0286893690426434,0.0262867689668403,0.00489124468060123 -bird,bird,north,,,YEWA,TreedFen3,5,0.031404364802713,0.0230203258078457,0.0337911333203274,0.0316465490426032,0.0289430156828602,0.00548345748227703 -bird,bird,north,,,YEWA,TreedFen4,5,0.0310353005156193,0.0229524913747421,0.0338582352701967,0.0317256434654338,0.0288609514455203,0.00550888542351665 -bird,bird,north,,,YEWA,TreedFen5,5,0.0278154609778999,0.0207556385456937,0.0306353026947788,0.0289050176894887,0.0260631606546629,0.0049565302639343 -bird,bird,north,,,YEWA,TreedFen6,5,0.0226089781361948,0.0170225823525394,0.0250329038492433,0.023933970922363,0.0213158555743729,0.00399734472991934 -bird,bird,north,,,YEWA,TreedFen7,5,0.0166663297897427,0.0126617741481907,0.0184756251524069,0.0180108827091141,0.0157894768182317,0.00289715122347528 -bird,bird,north,,,YEWA,TreedFen8,5,0.0111420056428385,0.00854164778652357,0.0123193300297175,0.0123178229176012,0.010594291818947,0.0018963603193835 -bird,bird,north,,,YEWA,GrassHerb,5,0.0932809108920782,0.0913238743042866,0.099354153490354,0.0901967196519561,0.0947526791900974,0.00452534589281357 -bird,bird,north,,,YEWA,Shrub,5,0.0137692356170479,0.0119314278078182,0.0157329585961985,0.0157895871550544,0.0138175228868595,0.00189032792293432 -bird,bird,north,,,YEWA,GraminoidFen,5,0.0568382240230587,0.0469653962284414,0.0581610479717628,0.0584309966782358,0.0538402009564441,0.00660625447641818 -bird,bird,north,,,YEWA,Marsh,5,0.0523104434118613,0.0513226604208148,0.0592605534505783,0.0508708598171353,0.0546191488316924,0.00413758571332043 -bird,bird,north,,,YEWA,RoughP,5,0.0682370509878256,0.0670669867920174,0.0695536106096402,0.0675367024470256,0.0682490773036854,0.0013325208003094 -bird,bird,north,,,YEWA,TameP,5,0.0388719938949029,0.0351357025693022,0.0407515647841364,0.0388719938949029,0.0381829277637048,0.00280038505345587 -bird,bird,north,,,YEWA,Crop,5,0.0480473182692122,0.0467260154201003,0.0494996772635692,0.0480608449912437,0.048048644626923,0.00153038688777236 -bird,bird,north,,,YEWA,Industrial,5,0.0209926161493617,0.0179403892660471,0.0274121855791778,0.0163774906175213,0.0224244654410295,0.00477087310459995 -bird,bird,north,,,YEWA,Mine,5,0.0298281089999606,0.0252803812327327,0.0438712258060967,0.0425264275216284,0.0335602920110228,0.00942421656959815 -bird,bird,north,,,YEWA,Rural,5,0.0520106523964021,0.0509948165571747,0.0580204328798446,0.0511767629721787,0.0538135079742067,0.00385508094702323 -bird,bird,north,,,YEWA,Urban,5,0.0189358775335448,0.0180723788869236,0.0232307511964699,0.0175580460951392,0.0200793068448389,0.00338352975115308 -bird,bird,north,,,YEWA,CCSpruceR,5,0.0152672175746062,0.0139145872911392,0.0165869364759518,0.0140004857871316,0.0152198272082254,0.00132815720387295 -bird,bird,north,,,YEWA,CCSpruce1,5,0.0145361447342197,0.0133048327331401,0.0151662007660585,0.0129654763620514,0.0142937917361502,0.000959125878049657 -bird,bird,north,,,YEWA,CCSpruce2,5,0.0142897376611622,0.0132388070120826,0.0146721348538594,0.0127102186233497,0.0140660338253786,0.000805593935662693 -bird,bird,north,,,YEWA,CCSpruce3,5,0.0134450799502097,0.0127354661170899,0.0148322925225234,0.0125004237260447,0.0137249541584959,0.00104203775139054 -bird,bird,north,,,YEWA,CCSpruce4,5,0.0107434349248054,0.0105759890760241,0.0127445041685453,0.0105517888223615,0.0114569858337227,0.00114367697811895 -bird,bird,north,,,YEWA,CCPineR,5,0.0117888489972604,0.00978058439715013,0.0136122385160046,0.0117888489972604,0.0117069884728364,0.00190028909974178 -bird,bird,north,,,YEWA,CCPine1,5,0.0109173385362286,0.00950427775443443,0.0124464416038799,0.0109173385362286,0.0109676663715755,0.0014493957862129 -bird,bird,north,,,YEWA,CCPine2,5,0.0107024034987813,0.00963763502050784,0.0118767346358323,0.0107024034987813,0.0107680430445057,0.00110689821889728 -bird,bird,north,,,YEWA,CCPine3,5,0.0105322296684723,0.00985879892133643,0.0109469939924601,0.0105257496024575,0.0104678436776119,0.000624606314885391 -bird,bird,north,,,YEWA,CCPine4,5,0.00888493777781158,0.00827021172815224,0.00903877043393079,0.00888493777781158,0.00872016122181434,0.000433694848090059 -bird,bird,north,,,YEWA,CCDecidR,5,0.0408740518525815,0.0395742880103873,0.0463855635812126,0.0389177958906805,0.0423301854605452,0.00406186997061815 -bird,bird,north,,,YEWA,CCDecid1,5,0.0504993452950062,0.0491803622371971,0.0566278245259164,0.048545974417128,0.0521870283212628,0.00434829871604341 -bird,bird,north,,,YEWA,CCDecid2,5,0.062995265035987,0.0619691334562304,0.0695286705182462,0.0614429350398245,0.0649617151096108,0.00438105204093069 -bird,bird,north,,,YEWA,CCDecid3,5,0.0839595481698585,0.0837446499537815,0.090415392433214,0.0836626760316502,0.0862405157433662,0.00384879137472909 -bird,bird,north,,,YEWA,CCDecid4,5,0.0881841836019783,0.0875140301840755,0.0935026282391147,0.0881841836019783,0.089905070222935,0.00326484969143502 -bird,bird,north,,,YEWA,CCMixedwoodR,5,0.0198089465088669,0.0188166896946456,0.0215401269632987,0.0183995775182405,0.0200471562894921,0.00152526660104984 -bird,bird,north,,,YEWA,CCMixedwood1,5,0.0246050062604319,0.0233792653816228,0.0262550008779679,0.0229515931990476,0.0247196289741307,0.0015772935132775 -bird,bird,north,,,YEWA,CCMixedwood2,5,0.0307677459222674,0.0294152736977039,0.0322590575421635,0.0290490255252145,0.0307779939565969,0.00150046114776195 -bird,bird,north,,,YEWA,CCMixedwood3,5,0.0410887724516163,0.0397071014363877,0.0419786408808556,0.0395540872189119,0.0408732849664851,0.00113007823491948 -bird,bird,north,,,YEWA,CCMixedwood4,5,0.0429775093725811,0.0417350634696179,0.0433309104754257,0.0416917681213261,0.0426142220574469,0.000811468917178181 -bird,bird,north,,,YEWA,ShrubbySwamp,5,0.084170088903374,0.0814218719690635,0.0880371848217152,0.079822188726824,0.0845953556361207,0.00359783935045764 -bird,bird,north,,,YEWA,ShrubbyBog,5,4.8908918803986e-06,4.23856436295343e-06,5.39123857787991e-06,4.42578200846098e-06,4.83402759311359e-06,5.66960969792273e-07 -bird,bird,north,,,YEWA,ShrubbyFen,5,0.0414566214404942,0.039261597045695,0.0505385114750219,0.0484352778746871,0.0440925167844869,0.00577045904748459 -bird,bird,north,,,YEWA,TreedSwamp,5,0.0406512816816615,0.0399137539513559,0.0426021810257371,0.0406996342472028,0.041037209932847,0.00163945654589851 -bird,bird,south,,,AMRO,Loamy,5,0.0241321618221621,0.0236693559161623,0.0244417594641063,0.0239569869686121,0.0240845194350461,0.000397588872294506 -bird,bird,south,,,AMRO,Blowout,5,0.00525978394452474,0.00483082627794943,0.00554114840096604,0.00559111949874543,0.00521832850528163,0.000380997984164263 -bird,bird,south,,,AMRO,ClaySub,5,0.0224545103948504,0.0209236101394104,0.0249199215728223,0.0250347637306298,0.0228949983648061,0.00202623689619071 -bird,bird,south,,,AMRO,Crop,5,0.0230932157889498,0.0226956842202502,0.0238595151902264,0.0236839952497224,0.0232465903153888,0.000582704673265551 -bird,bird,south,,,AMRO,Industrial,5,0.0262354418047225,0.0234169654211887,0.029992373999167,0.0233617397737627,0.0264579449889971,0.00338847243340584 -bird,bird,south,,,AMRO,Mine,5,0.0159069410465305,0.014010684448404,0.025109840836752,0.0159069410465305,0.018698641258821,0.00572004799070757 -bird,bird,south,,,AMRO,Other,5,0.016098468661524,0.0128083644871958,0.0205965606097986,0.0210202102474962,0.016661932215088,0.00387486651255373 -bird,bird,south,,,AMRO,RapidDrain,5,0.0236194782771747,0.0230076960669836,0.0255994765544292,0.0251675270889975,0.0241724133059695,0.00131670630516629 -bird,bird,south,,,AMRO,RoughP,5,0.0117188270413036,0.0109276575293055,0.0122383602743591,0.0112036711001846,0.0116002215755914,0.000670782916246255 -bird,bird,south,,,AMRO,Rural,5,0.0437070809393601,0.0424258544652182,0.0441423406644261,0.0437070809393601,0.0434272383100641,0.00106086054088164 -bird,bird,south,,,AMRO,SandyLoam,5,0.0147924310215059,0.0145440646614329,0.0149852796963371,0.0148469628367301,0.0147628355850776,0.000223475299912133 -bird,bird,south,,,AMRO,SoilUnknown,5,0.0243829782616065,0.0238722939341933,0.0257510776949805,0.0235542385568422,0.0247241157220053,0.00096914474918751 -bird,bird,south,,,AMRO,TameP,5,0.0270019486472823,0.0254866831491566,0.0280561852466744,0.0286155273878474,0.0268110439620644,0.00133276654620004 -bird,bird,south,,,AMRO,ThinBreak,5,0.0338003999398653,0.0330400812092674,0.037911798723991,0.0338003999398653,0.0350955166553413,0.00251362313805057 -bird,bird,south,,,AMRO,Urban,5,0.0508184548862111,0.0491287965989474,0.0516212401204611,0.0483719535027645,0.0505268596480749,0.00133294289276666 -bird,bird,south,,,AMRO,Water,5,0.0162706932878444,0.0146410988852416,0.0316387080129026,0.0364343359767869,0.0213464232510502,0.00935524776744551 -bird,bird,south,,,AMRO,Wellsites,5,0.0389513908707596,0.0124040818853545,0.0420540796368127,0.0437526708429192,0.0306430201674771,0.0177335069810587 -bird,bird,south,,,YEWA,Loamy,5,0.0889862342739654,0.0833142720796077,0.0912893187301941,0.0911235422512483,0.0878843046841073,0.00434504301981026 -bird,bird,south,,,YEWA,Blowout,5,0.0401628947157703,0.0373442373283019,0.0409157196574691,0.0401628947157703,0.0393477535478598,0.00184103064636671 -bird,bird,south,,,YEWA,ClaySub,5,0.0776026172652354,0.072738347688647,0.0806537209465533,0.0776026172652354,0.0770737187243197,0.00428126144830476 -bird,bird,south,,,YEWA,Crop,5,0.0477258909723985,0.0445439418592085,0.0483983633635829,0.0485578693440802,0.0468618523426874,0.00225396025244564 -bird,bird,south,,,YEWA,Industrial,5,0.0527276712827915,0.0407707589259449,0.0732258847421466,0.0332758320869208,0.0564078240303074,0.0167976738050071 -bird,bird,south,,,YEWA,Mine,5,0.0971806065268231,0.0846776257647363,0.121933813451961,0.112500894420852,0.101522798600799,0.0187712933702914 -bird,bird,south,,,YEWA,Other,5,0.0875251951229225,0.0772673767356427,0.0958802062242052,0.100975326566864,0.0863792254951111,0.0097153991353414 -bird,bird,south,,,YEWA,RapidDrain,5,0.0665179523278429,0.0604144987507378,0.0698664068896251,0.0626153705338298,0.0654553589739474,0.00472953584424184 -bird,bird,south,,,YEWA,RoughP,5,0.0573815111243077,0.0533876378460484,0.0600900298992678,0.0564654939180325,0.0569589790219802,0.00361546417207247 -bird,bird,south,,,YEWA,Rural,5,0.0661716927633792,0.0628530852788089,0.0689878709663489,0.0657781939712168,0.0660096425642764,0.00343389323428838 -bird,bird,south,,,YEWA,SandyLoam,5,0.0511277264137194,0.0440509842319305,0.0548605397562365,0.0475053886435979,0.0500154530025099,0.0055363202275427 -bird,bird,south,,,YEWA,SoilUnknown,5,0.0997155153997096,0.0970882713180495,0.100977766167759,0.0979710879919298,0.0991489817590435,0.00200077514407797 -bird,bird,south,,,YEWA,TameP,5,0.0457686292658743,0.0435985886063968,0.0531975721116954,0.050747465664211,0.0477197523221636,0.00492698526781333 -bird,bird,south,,,YEWA,ThinBreak,5,0.183371746527312,0.178987377035422,0.188606353214059,0.179236197079509,0.183711346298015,0.00477581737073191 -bird,bird,south,,,YEWA,Urban,5,0.0507331439696001,0.0448023038764347,0.0520602501639247,0.0507331439696001,0.0488964675676067,0.00370427005030944 -bird,bird,south,,,YEWA,Water,5,5.79878735375159e-07,4.76822525465649e-07,1.2010658345155e-06,6.60804504718257e-07,7.52565880644025e-07,4.58515195214571e-07 -bird,bird,south,,,YEWA,Wellsites,5,6.90003938618652e-06,5.25255285811954e-06,0.365617585043016,0.413267228722246,0.141485598674952,0.19825432154381 -bryophyte,bryophyte,north,,,Bryum.All,WhiteSpruce,5,0.104623666278372,0.0874722861544613,0.112679942833954,0.105666560031913,0.101095355834302,0.0132153348867197 -bryophyte,bryophyte,north,,,Bryum.All,Pine,5,0.0674475602586271,0.0606847013691161,0.0749869714210322,0.0672116807219031,0.0678337227606607,0.00792832957785061 -bryophyte,bryophyte,north,,,Bryum.All,Deciduous,5,0.0919819625968023,0.0817645391225394,0.0978941606981865,0.0919819625968023,0.0907672040562639,0.008858552895604 -bryophyte,bryophyte,north,,,Bryum.All,Mixedwood,5,0.0937191187701653,0.0766558041922239,0.101378049564084,0.0937191187701653,0.0906024818416207,0.0130996076667672 -bryophyte,bryophyte,north,,,Bryum.All,BlackSpruce,5,0.0821737878210885,0.0796472718492078,0.0914478284992744,0.082297728208448,0.0843434814639106,0.00751140230506868 -bryophyte,bryophyte,north,,,Bryum.All,TreedFen,5,0.103825175281253,0.09066068154714,0.115404378478857,0.103825175281253,0.102851672188754,0.0127091628628293 -bryophyte,bryophyte,north,,,Bryum.All,TreedSwamp,5,0.14838302487508,0.134285947262339,0.15433966365031,0.14838302487508,0.145026963697524,0.0100379018142146 -bryophyte,bryophyte,north,,,Bryum.All,GraminoidFen,5,0.102608545171503,0.091652995844401,0.112334612258834,0.102608545171503,0.101863685320028,0.0108083654561642 -bryophyte,bryophyte,north,,,Bryum.All,ShrubbyFen,5,0.108214861633538,0.0993466210779264,0.120681656680431,0.108214861633538,0.109555249188518,0.0105175724757792 -bryophyte,bryophyte,north,,,Bryum.All,ShrubbyBog,5,0.0822115868613973,0.0802689106984959,0.0930553295605826,0.0837594118723497,0.0852163915453797,0.00798883798126357 -bryophyte,bryophyte,north,,,Bryum.All,ShrubbySwamp,5,0.142659930075182,0.128769149552852,0.158781358177345,0.147623294355338,0.143670605582959,0.0164498267712743 -bryophyte,bryophyte,north,,,Bryum.All,Marsh,5,0.103008117733597,0.0928698823634094,0.112264034639262,0.105256814676515,0.102812793714352,0.0108157208529732 -bryophyte,bryophyte,north,,,Bryum.All,Shrub,5,0.205603841480222,0.174880422823466,0.253531593550174,0.19679926045177,0.213170463378129,0.0395744190804504 -bryophyte,bryophyte,north,,,Bryum.All,Grass,5,0.205731498249484,0.170688321636038,0.244995847117187,0.195483946860916,0.207623905262506,0.0385480440688637 -bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruceR,5,0.165475582798583,0.15518207397193,0.199998766587222,0.169554083366261,0.173608751875238,0.0270490393438733 -bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce1,5,0.177961608354587,0.154126217921708,0.209058286085648,0.177961608354587,0.18107397234559,0.0302138318102788 -bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce2,5,0.202884480777997,0.171266875481849,0.231723154322466,0.202884480777997,0.200890380741,0.0305589414199888 -bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce3,5,0.202884480777997,0.171266875481849,0.231723154322466,0.202884480777997,0.200890380741,0.0305589414199888 -bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce4,5,0.202884480777997,0.171266875481849,0.231723154322466,0.202884480777997,0.200890380741,0.0305589414199888 -bryophyte,bryophyte,north,,,Bryum.All,CCPineR,5,0.16022882422794,0.145827136293942,0.180254773430031,0.16022882422794,0.16121093845615,0.0194156293916364 -bryophyte,bryophyte,north,,,Bryum.All,CCPine1,5,0.164291720401128,0.133145499888549,0.203845059962508,0.164291720401128,0.16608604674609,0.0373996968191405 -bryophyte,bryophyte,north,,,Bryum.All,CCPine2,5,0.166830898209846,0.13451769307428,0.206946727968588,0.166830898209846,0.168100580656605,0.0385257305816659 -bryophyte,bryophyte,north,,,Bryum.All,CCPine3,5,0.166830898209846,0.13451769307428,0.206946727968588,0.166830898209846,0.168100580656605,0.0385257305816659 -bryophyte,bryophyte,north,,,Bryum.All,CCPine4,5,0.166830898209846,0.13451769307428,0.206946727968588,0.166830898209846,0.168100580656605,0.0385257305816659 -bryophyte,bryophyte,north,,,Bryum.All,CCDeciduousR,5,0.161533823124016,0.1404659727257,0.174401252222805,0.161533823124016,0.158553527581378,0.0169028615434247 -bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous1,5,0.174108402828508,0.161888476473846,0.17922980187219,0.17800935952687,0.171879211863207,0.00993958041925984 -bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous2,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous3,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous4,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,CCMixedwoodR,5,0.161533823124016,0.1404659727257,0.174401252222805,0.161533823124016,0.158553527581378,0.0169028615434247 -bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood1,5,0.174108402828508,0.161888476473846,0.17922980187219,0.17800935952687,0.171879211863207,0.00993958041925984 -bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood2,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood3,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood4,5,0.150834982909368,0.122713525430442,0.157034030570364,0.150834982909368,0.142500719768878,0.0176710184164726 -bryophyte,bryophyte,north,,,Bryum.All,EnSeismic,5,0.143247261154779,0.132144241170755,0.15978556612201,0.143247261154779,0.145235354857167,0.0137587578338995 -bryophyte,bryophyte,north,,,Bryum.All,EnSoftLin,5,0.181976104710237,0.176334441522147,0.207421144310894,0.181976104710237,0.188523522297283,0.0195432641471242 -bryophyte,bryophyte,north,,,Bryum.All,TrSoftLin,5,0.172100168424541,0.147841165917588,0.187901203255329,0.169203477599876,0.169132193136031,0.0230076012908074 -bryophyte,bryophyte,north,,,Bryum.All,HardLin,5,0.119094247542269,0.0902286867109537,0.153196513874268,0.124691301578451,0.121155863573338,0.035675361881301 -bryophyte,bryophyte,north,,,Bryum.All,UrbInd,5,0.15870235487759,0.131129493678025,0.174263860237473,0.15870235487759,0.154671253635583,0.0218939433100647 -bryophyte,bryophyte,north,,,Bryum.All,Wellsites,5,0.133875416816634,0.127095175106388,0.159927124091914,0.133875416816634,0.14193011214681,0.0168562821513424 -bryophyte,bryophyte,north,,,Bryum.All,Crop,5,0.0820223721088346,0.0684673797777877,0.0983546690511286,0.078395085879973,0.0834195722128434,0.0152344649418885 -bryophyte,bryophyte,north,,,Bryum.All,TameP,5,0.14146232517738,0.121223613545195,0.153442524325088,0.14146232517738,0.138962795983375,0.0169647163928601 -bryophyte,bryophyte,north,,,Bryum.All,RoughP,5,0.144150717399513,0.133810027719149,0.158938339577548,0.143669438263278,0.14578740024442,0.0141397169788724 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,WhiteSpruce,5,0.170617726106481,0.150531559521949,0.174419709411094,0.176935668903147,0.164807860658135,0.0139893488460334 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Pine,5,0.155784234979198,0.149699740009459,0.170954712542573,0.172791155095638,0.159310643176365,0.0106361302435088 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Deciduous,5,0.157244630521525,0.142941372795819,0.163468234285499,0.162052893569508,0.154697151179962,0.0115856768365642 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Mixedwood,5,0.158627676901957,0.13860286258159,0.171247492283289,0.15788444654738,0.15647078515815,0.018649527031244 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,BlackSpruce,5,0.0677921007733422,0.0521429659792482,0.0729564235762428,0.0685353715648879,0.0638599149238077,0.0110949308248088 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedFen,5,0.0704119831070097,0.059745149134307,0.0811325128636527,0.0794290899103082,0.0706134625134515,0.0105585327678486 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedSwamp,5,0.112752005656074,0.0984937696101871,0.137854437407414,0.122922619803698,0.116412196602916,0.0203688771304333 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,GraminoidFen,5,0.071246619098096,0.0646705299404144,0.0824857475812227,0.0833874009572022,0.0733295931607397,0.00895134876938999 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyFen,5,0.0704520736989616,0.0644476326851635,0.0829604405865539,0.0826619615495143,0.0733794195671157,0.00945907870284914 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyBog,5,0.0669469626238629,0.0541167658533186,0.0737851895171726,0.0696158682654045,0.0648674857861799,0.0105595763340405 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbySwamp,5,0.115517060865014,0.0928903325785583,0.132534115088148,0.121979163778046,0.112959172899961,0.0198288996671609 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Marsh,5,0.113514973804854,0.096254727615824,0.137347333930943,0.121750013890524,0.115138525017619,0.0213109634132099 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Shrub,5,0.258030208654547,0.21433734112913,0.288008334755188,0.275203776452487,0.251704525155945,0.0367095721590051 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Grass,5,0.271067495374639,0.240923289977324,0.31781564474553,0.292406492273734,0.276440725276057,0.0390993119735511 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruceR,5,0.338256695749658,0.31824880432862,0.364273497154808,0.345415843034206,0.340062112951671,0.0241555437358403 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce1,5,0.310222319426016,0.28440620861304,0.33208710700024,0.310222319426016,0.308604286297291,0.0258019292550109 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce2,5,0.344912345599046,0.314582284578097,0.372632043273075,0.35184667493467,0.343098817236955,0.0297346606357341 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce3,5,0.344912345599046,0.314582284578097,0.372632043273075,0.35184667493467,0.343098817236955,0.0297346606357341 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce4,5,0.344912345599046,0.314582284578097,0.372632043273075,0.35184667493467,0.343098817236955,0.0297346606357341 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPineR,5,0.332237563055896,0.30230266389427,0.354086616306992,0.332237563055896,0.327969786265574,0.0265319724200263 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine1,5,0.345687365666162,0.317841589858981,0.373089123054865,0.354005283762296,0.344278366892055,0.0283247255662619 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine2,5,0.348225414237899,0.321582172515133,0.377622132855574,0.359033033466831,0.348154712660996,0.0285763459461223 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine3,5,0.348225414237899,0.321582172515133,0.377622132855574,0.359033033466831,0.348154712660996,0.0285763459461223 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine4,5,0.348225414237899,0.321582172515133,0.377622132855574,0.359033033466831,0.348154712660996,0.0285763459461223 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduousR,5,0.318830335897459,0.27955994009676,0.332129458277748,0.329698896772244,0.308702802560019,0.0264775701221862 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous1,5,0.311890371027914,0.291615240620109,0.319691638401899,0.321691125624866,0.307838810847009,0.0161966294285432 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous2,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous3,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous4,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwoodR,5,0.318830335897459,0.27955994009676,0.332129458277748,0.329698896772244,0.308702802560019,0.0264775701221862 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood1,5,0.311890371027914,0.291615240620109,0.319691638401899,0.321691125624866,0.307838810847009,0.0161966294285432 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood2,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood3,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood4,5,0.30432063546174,0.283360736827309,0.339489268918774,0.311263402327306,0.309378509074765,0.0314758135403339 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSeismic,5,0.159710015581722,0.116043191735016,0.17072117947456,0.165838564517478,0.148662018229779,0.0324110247868619 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSoftLin,5,0.159418027877254,0.124794622673536,0.167171385865762,0.168995137454078,0.15011162020904,0.0243734811900978 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,TrSoftLin,5,0.171669259495879,0.127684819372006,0.18790477785131,0.180401709818175,0.162342674332897,0.0340630905757622 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,HardLin,5,0.10993941717652,0.0990227818218094,0.119734614597133,0.113196196589015,0.109200436852334,0.0104589500726513 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,UrbInd,5,0.125398730461756,0.108350462054011,0.129809259709619,0.129273397383927,0.120827281896463,0.0113320859784318 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Wellsites,5,0.120865154448231,0.106933037026666,0.135907579517197,0.135555384778656,0.121358221869125,0.0143857836418377 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,Crop,5,0.074461797530342,0.0663055752886782,0.0784646756931369,0.080469463459423,0.0727333613705306,0.00612570365671694 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,TameP,5,0.139209058513911,0.127041125175049,0.146790768834801,0.148781802724197,0.137618984018511,0.0100770984650779 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,RoughP,5,0.141247542624157,0.127091822586834,0.155254205987659,0.153373422859104,0.141796780024815,0.0145812899277074 -bryophyte,bryophyte,south,,,Bryum.All,Loamy,5,0.128371275228788,0.126267345563482,0.192554766969062,0.156609764097912,0.150844569501336,0.0388926494419214 -bryophyte,bryophyte,south,,,Bryum.All,SandyLoam,5,0.163687813793554,0.157864329641462,0.257888717822438,0.209805018041589,0.196019214469412,0.0568093152706092 -bryophyte,bryophyte,south,,,Bryum.All,ClaySub,5,0.138847380253595,0.129440293252389,0.192920064856309,0.163480694825708,0.154866293409777,0.0350918992412223 -bryophyte,bryophyte,south,,,Bryum.All,RapidDrain,5,0.151000064270357,0.12841178366917,0.214806584231797,0.179839142499951,0.165207990926408,0.0458845605396699 -bryophyte,bryophyte,south,,,Bryum.All,Blowout,5,0.177847228366661,0.13169779331486,0.213345983888902,0.18962303788414,0.172170997481874,0.0412393742258946 -bryophyte,bryophyte,south,,,Bryum.All,ThinBreak,5,0.108774649500815,0.100351516195694,0.149118127661729,0.13142432263142,0.120624872013578,0.0258432353890413 -bryophyte,bryophyte,south,,,Bryum.All,Other,5,0.153008911192339,0.143619231829843,0.22761954763385,0.192944265564736,0.176977047927853,0.0459440004598543 -bryophyte,bryophyte,south,,,Bryum.All,EnSeismic,5,0.334606425412252,0.156177390749094,0.434765493190856,0.334606425412252,0.302593815200546,0.140891000271527 -bryophyte,bryophyte,south,,,Bryum.All,EnSoftLin,5,0.329548544110659,0.161421900535046,0.471022939170799,0.329548544110659,0.317093878942589,0.158105322154712 -bryophyte,bryophyte,south,,,Bryum.All,TrSoftLin,5,0.375563737003068,0.183612394029062,0.460581289024939,0.383815980210159,0.332867119897228,0.143170601701847 -bryophyte,bryophyte,south,,,Bryum.All,HardLin,5,0.1468328366873,0.0883371659600431,0.208225904838994,0.1468328366873,0.147701185603674,0.0590188717154669 -bryophyte,bryophyte,south,,,Bryum.All,UrbInd,5,0.104701482537215,0.103446912111058,0.180846515565828,0.15376441179003,0.132924773411517,0.0427257127054497 -bryophyte,bryophyte,south,,,Bryum.All,Wellsites,5,0.103827170399858,0.0947594363214667,0.177418037109713,0.140420183947776,0.127451513800266,0.0457368790572256 -bryophyte,bryophyte,south,,,Bryum.All,Crop,5,0.0834326498037117,0.0762103903441286,0.118437315338461,0.100381454106891,0.0935683426293577,0.0228646836791101 -bryophyte,bryophyte,south,,,Bryum.All,TameP,5,0.124085918128196,0.113948945983715,0.179967952926487,0.164423435504234,0.141507431179504,0.0342621971358284 -bryophyte,bryophyte,south,,,Bryum.All,RoughP,5,0.102704627973536,0.0996345261643043,0.149622110445284,0.13419258459678,0.119382463691813,0.0269065385329828 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,Loamy,5,0.0641849871927666,0.050457745645129,0.07270277108154,0.0641849871927666,0.062283620197523,0.0112971952892291 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,SandyLoam,5,0.0742797240604397,0.0646788146747532,0.0864582537717612,0.0742797240604397,0.0755252597804641,0.0107846710275309 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,ClaySub,5,0.0592505109132571,0.0488344242492647,0.0699996689330231,0.0592505109132571,0.0597454510981899,0.010682085375127 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,RapidDrain,5,0.102551453445416,0.0986747245418018,0.114617392978353,0.102551453445416,0.105621369756077,0.00812414366804172 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,Blowout,5,0.108577749315386,0.0975839841162081,0.119450204289074,0.108577749315386,0.109033282223042,0.0116238846665256 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,ThinBreak,5,0.0863196169586629,0.0821949327472845,0.0998445672388945,0.0863196169586629,0.0901856350845793,0.0089444795540914 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,Other,5,0.0345770287640794,0.0255035080368273,0.0522013822338746,0.0345770287640794,0.037612312759654,0.0151375482648069 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSeismic,5,0.21574628197629,0.142477035309188,0.248955821906755,0.16811461642476,0.20078218558815,0.05348224298659 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSoftLin,5,0.211754576394213,0.13866240930989,0.222190780941109,0.169876045775971,0.188478407991055,0.0449378897052303 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,TrSoftLin,5,0.194018984551885,0.147159530414209,0.240287969097993,0.160797502761418,0.194008212581741,0.0456931192595006 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,HardLin,5,0.0304162076535258,0.029166064034397,0.0432718766595132,0.0318703430228878,0.0343665218104774,0.00930525115482798 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,UrbInd,5,0.0356740467063795,0.0286632065765225,0.0429956144747444,0.0356740467063795,0.0357589664307443,0.00723711747496788 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,Wellsites,5,0.0429922761944743,0.0335372326498226,0.0467533160557549,0.0401699600814057,0.0411525817485948,0.00727575405039167 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,Crop,5,0.0228689540457825,0.0221752232262121,0.0277192165390448,0.0251044943216744,0.0243976201715565,0.00308215429653747 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,TameP,5,0.0603942872656395,0.0505159739370433,0.0666385260267113,0.054988635814872,0.0588718286082372,0.00839424264952957 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,RoughP,5,0.0576120452574267,0.0486453851644709,0.0647244005298698,0.0547537316462016,0.0571023350335811,0.00830015570016307 -lichen,lichen,north,,,Cladonia.chlorophaea,WhiteSpruce,5,0.299712823406177,0.267794399850091,0.31752477391247,0.299712823406177,0.294332455268539,0.0254319271895433 -lichen,lichen,north,,,Cladonia.chlorophaea,Pine,5,0.211658158470293,0.187362325848506,0.221031041496282,0.213983673760142,0.205564667451797,0.0169792480382245 -lichen,lichen,north,,,Cladonia.chlorophaea,Deciduous,5,0.242873835985486,0.212311835312585,0.251351915041242,0.242873835985486,0.234339735870853,0.0204421025800494 -lichen,lichen,north,,,Cladonia.chlorophaea,Mixedwood,5,0.236140666947542,0.203901410662992,0.241600545650375,0.236140666947542,0.225630360660801,0.0195391792025033 -lichen,lichen,north,,,Cladonia.chlorophaea,BlackSpruce,5,0.225302562827919,0.196261190714303,0.244967963651107,0.227843083435444,0.22067099355486,0.0249924693619386 -lichen,lichen,north,,,Cladonia.chlorophaea,TreedFen,5,0.224783844707001,0.197704546932338,0.235642483863854,0.224783844707001,0.218150987211939,0.0190646078283693 -lichen,lichen,north,,,Cladonia.chlorophaea,TreedSwamp,5,0.242591050953153,0.214272220682311,0.263632169592523,0.252640022245541,0.239209971917443,0.024497807226558 -lichen,lichen,north,,,Cladonia.chlorophaea,GraminoidFen,5,0.202508662292495,0.17836174844921,0.21210857272356,0.202508662292495,0.19688618246433,0.0169331647912046 -lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyFen,5,0.199216086052812,0.177644856358741,0.212793282034292,0.199216086052812,0.196320054390399,0.0174207915910404 -lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyBog,5,0.221625062963166,0.192800896978028,0.237791260930442,0.22188456568578,0.215779368688039,0.0231976975585119 -lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbySwamp,5,0.200597494570593,0.181101882111374,0.22301802236821,0.214356168657179,0.201391766660484,0.0207072653283275 -lichen,lichen,north,,,Cladonia.chlorophaea,Marsh,5,0.175479744974187,0.145546102447274,0.1832220543811,0.175479744974187,0.166610979908685,0.019157106802069 -lichen,lichen,north,,,Cladonia.chlorophaea,Shrub,5,0.106371701235334,0.0787744447962615,0.122122293070246,0.12074279741616,0.10224974598974,0.0217390056603546 -lichen,lichen,north,,,Cladonia.chlorophaea,Grass,5,0.096028783987272,0.0852156012169443,0.115683635060321,0.119014260443607,0.0998143813618244,0.0154318059448801 -lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruceR,5,0.169230436345503,0.139669943547809,0.195621086516419,0.18615405031743,0.168442254933479,0.0281649616426591 -lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce1,5,0.181781734947402,0.144657786769576,0.210046678174516,0.20367100535893,0.17894644898064,0.0325932819474839 -lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce2,5,0.208024972338578,0.167844483274645,0.235168093350801,0.225668903881609,0.203677228485813,0.0342607412322384 -lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce3,5,0.208024972338578,0.167844483274645,0.235168093350801,0.225668903881609,0.203677228485813,0.0342607412322384 -lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce4,5,0.208024972338578,0.167844483274645,0.235168093350801,0.225668903881609,0.203677228485813,0.0342607412322384 -lichen,lichen,north,,,Cladonia.chlorophaea,CCPineR,5,0.167651692032762,0.133400179473255,0.18613840582969,0.177981748325327,0.16153475071322,0.0262767055968338 -lichen,lichen,north,,,Cladonia.chlorophaea,CCPine1,5,0.205931254374661,0.156797989826113,0.214389722872389,0.215966217533035,0.190474350731153,0.0300029266310009 -lichen,lichen,north,,,Cladonia.chlorophaea,CCPine2,5,0.20940040025485,0.161084160390568,0.217535050260925,0.219134448870029,0.194244531984155,0.0295998827337324 -lichen,lichen,north,,,Cladonia.chlorophaea,CCPine3,5,0.20940040025485,0.161084160390568,0.217535050260925,0.219134448870029,0.194244531984155,0.0295998827337324 -lichen,lichen,north,,,Cladonia.chlorophaea,CCPine4,5,0.20940040025485,0.161084160390568,0.217535050260925,0.219134448870029,0.194244531984155,0.0295998827337324 -lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduousR,5,0.182662436599129,0.143290947030515,0.19168320742142,0.185594844139235,0.170905137694288,0.0249018018786431 -lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous1,5,0.169020934098229,0.153496766364474,0.186476102510212,0.18593824743331,0.170474553252928,0.0168133393763722 -lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous2,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous3,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous4,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwoodR,5,0.182662436599129,0.143290947030515,0.19168320742142,0.185594844139235,0.170905137694288,0.0249018018786431 -lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood1,5,0.169020934098229,0.153496766364474,0.186476102510212,0.18593824743331,0.170474553252928,0.0168133393763722 -lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood2,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood3,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood4,5,0.192198726287736,0.158139093430204,0.206351929165891,0.20739871277065,0.184869780779868,0.0243239274357252 -lichen,lichen,north,,,Cladonia.chlorophaea,EnSeismic,5,0.0677503172110941,0.0471429245544719,0.0732894752325876,0.0738978700051816,0.0617492589794445,0.0133508758867419 -lichen,lichen,north,,,Cladonia.chlorophaea,EnSoftLin,5,0.0560689010826879,0.0412420864698087,0.0607043262160254,0.0624980816232269,0.0520148802546486,0.00982245734083476 -lichen,lichen,north,,,Cladonia.chlorophaea,TrSoftLin,5,0.0605465982137621,0.0416835448522874,0.0681202259279406,0.0691216097124846,0.0563835551646629,0.0133846793873165 -lichen,lichen,north,,,Cladonia.chlorophaea,HardLin,5,0.0163800997555834,0.0142046646641618,0.0207897341200193,0.0172490121407761,0.0170729876025659,0.00365003569007476 -lichen,lichen,north,,,Cladonia.chlorophaea,UrbInd,5,0.026932901747997,0.0217317496788856,0.032534963821666,0.0293523293874362,0.0268883344802531,0.00545997483483957 -lichen,lichen,north,,,Cladonia.chlorophaea,Wellsites,5,0.0269864370031369,0.0206711523672041,0.0318822891198792,0.0309948356921504,0.0263704156910059,0.00555421916938355 -lichen,lichen,north,,,Cladonia.chlorophaea,Crop,5,0.00896331783563511,0.0086673108662899,0.0116267325606197,0.00981647353265912,0.00980133894395803,0.00175930642910351 -lichen,lichen,north,,,Cladonia.chlorophaea,TameP,5,0.0284182757721163,0.0236344354897084,0.0319552752867162,0.0276152084684389,0.0280727667342162,0.0044863473416081 -lichen,lichen,north,,,Cladonia.chlorophaea,RoughP,5,0.025017860881902,0.0188312694768778,0.026815348770033,0.0254030986816399,0.0234837747077663,0.00461769635994761 -lichen,lichen,north,,,Physcia.adscendens,WhiteSpruce,5,0.0674088713205342,0.0614470981390403,0.0709653557850045,0.0640273150290537,0.0664616657481686,0.00483973536953268 -lichen,lichen,north,,,Physcia.adscendens,Pine,5,0.0472827411302775,0.0444708053145572,0.0510027667554357,0.0463066694973039,0.0475721599857571,0.00352533170238091 -lichen,lichen,north,,,Physcia.adscendens,Deciduous,5,0.171848485649294,0.166777961008327,0.183050642925004,0.171848485649294,0.173855238772586,0.00914403110161088 -lichen,lichen,north,,,Physcia.adscendens,Mixedwood,5,0.103902979074589,0.0988920160049394,0.118672559907655,0.103902979074589,0.107234040275857,0.0114771871495709 -lichen,lichen,north,,,Physcia.adscendens,BlackSpruce,5,0.0116692571413722,0.0109018461718084,0.0148387626612113,0.0111517688016057,0.0125461466167073,0.00209093161445967 -lichen,lichen,north,,,Physcia.adscendens,TreedFen,5,0.0134516061910062,0.0123980063480553,0.0165551828482426,0.0127565152125194,0.0141541095221522,0.00229453976133663 -lichen,lichen,north,,,Physcia.adscendens,TreedSwamp,5,0.0684768936890089,0.0623100924562356,0.0815946560942004,0.0684768936890089,0.0705801981762149,0.0108957147150476 -lichen,lichen,north,,,Physcia.adscendens,GraminoidFen,5,0.0143523346004894,0.0138707572661006,0.0201350817078948,0.0143523346004894,0.0163626382844971,0.00335206751763776 -lichen,lichen,north,,,Physcia.adscendens,ShrubbyFen,5,0.0135292337016339,0.0132145942878114,0.0184646324742449,0.0134564657796432,0.0152732316995139,0.0028508926162948 -lichen,lichen,north,,,Physcia.adscendens,ShrubbyBog,5,0.0122579132788025,0.0117121025240539,0.0159189671771411,0.0119692218653384,0.0134175491402069,0.00225699190399091 -lichen,lichen,north,,,Physcia.adscendens,ShrubbySwamp,5,0.0642372109431116,0.0574653507523936,0.0782239746399321,0.0642372109431116,0.0669036310187336,0.0104713536929674 -lichen,lichen,north,,,Physcia.adscendens,Marsh,5,0.0421183317862372,0.0354669594231994,0.0538859562288842,0.0421183317862372,0.0442954195638172,0.00917399885026702 -lichen,lichen,north,,,Physcia.adscendens,Shrub,5,0.148981950749374,0.139298464646428,0.195805779656963,0.159263060245612,0.161673968525425,0.0337376300319071 -lichen,lichen,north,,,Physcia.adscendens,Grass,5,0.155922328843144,0.144176169953379,0.217726117790744,0.165761675145329,0.172790434462016,0.0454060373755947 -lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruceR,5,0.0524933497432348,0.0448033430759125,0.0658373565662838,0.0524933497432348,0.0544000314789238,0.0109830467809342 -lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce1,5,0.0676142549226719,0.0595386229110912,0.0842373851191382,0.0676142549226719,0.0707090727129221,0.0133590871961955 -lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce2,5,0.075962081883682,0.0661774643260701,0.0924254985770442,0.075962081883682,0.0784452753755624,0.013398142459152 -lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce3,5,0.075962081883682,0.0661774643260701,0.0924254985770442,0.075962081883682,0.0784452753755624,0.013398142459152 -lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce4,5,0.075962081883682,0.0661774643260701,0.0924254985770442,0.075962081883682,0.0784452753755624,0.013398142459152 -lichen,lichen,north,,,Physcia.adscendens,CCPineR,5,0.0530687182992354,0.0447898946528459,0.0673364978932711,0.0530687182992354,0.0551521174496051,0.0115755412404529 -lichen,lichen,north,,,Physcia.adscendens,CCPine1,5,0.054822170261719,0.0468044875054749,0.0681089706028397,0.054822170261719,0.0567280326295669,0.0111281917828034 -lichen,lichen,north,,,Physcia.adscendens,CCPine2,5,0.0575642554040823,0.0490603503195198,0.0707082507546723,0.0575642554040823,0.0592950171173939,0.0111107786936451 -lichen,lichen,north,,,Physcia.adscendens,CCPine3,5,0.0575642554040823,0.0490603503195198,0.0707082507546723,0.0575642554040823,0.0592950171173939,0.0111107786936451 -lichen,lichen,north,,,Physcia.adscendens,CCPine4,5,0.0575642554040823,0.0490603503195198,0.0707082507546723,0.0575642554040823,0.0592950171173939,0.0111107786936451 -lichen,lichen,north,,,Physcia.adscendens,CCDeciduousR,5,0.0827606661851487,0.0719443499282712,0.0987851185715972,0.0827606661851487,0.08424359648793,0.013891073963227 -lichen,lichen,north,,,Physcia.adscendens,CCDeciduous1,5,0.100618826509217,0.0877886957545074,0.125713872307938,0.100618826509217,0.105057955345838,0.0192301298426666 -lichen,lichen,north,,,Physcia.adscendens,CCDeciduous2,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,CCDeciduous3,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,CCDeciduous4,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,CCMixedwoodR,5,0.0827606661851487,0.0719443499282712,0.0987851185715972,0.0827606661851487,0.08424359648793,0.013891073963227 -lichen,lichen,north,,,Physcia.adscendens,CCMixedwood1,5,0.100618826509217,0.0877886957545074,0.125713872307938,0.100618826509217,0.105057955345838,0.0192301298426666 -lichen,lichen,north,,,Physcia.adscendens,CCMixedwood2,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,CCMixedwood3,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,CCMixedwood4,5,0.084212382915902,0.073575752550813,0.103101354854498,0.084212382915902,0.0874790260715549,0.01475504906051 -lichen,lichen,north,,,Physcia.adscendens,EnSeismic,5,0.0256366775276155,0.0220396461224062,0.0258667757531508,0.0258176949589414,0.0244432729669476,0.00230206038606853 -lichen,lichen,north,,,Physcia.adscendens,EnSoftLin,5,0.0273345543422601,0.0238543237522917,0.0285016462750445,0.0273345543422601,0.0265845186308551,0.00281690803091184 -lichen,lichen,north,,,Physcia.adscendens,TrSoftLin,5,0.0237240874831371,0.0199061804072359,0.0246224989022288,0.0242538337610053,0.022644867925346,0.00248798442401649 -lichen,lichen,north,,,Physcia.adscendens,HardLin,5,0.019409667521594,0.0160175308478019,0.0222563530629276,0.0164220788059039,0.0190357313695079,0.00329744230865101 -lichen,lichen,north,,,Physcia.adscendens,UrbInd,5,0.0269462495385606,0.0228419440845845,0.0343747203469902,0.0269462495385606,0.0279577105129281,0.00665341387285884 -lichen,lichen,north,,,Physcia.adscendens,Wellsites,5,0.0189042713169681,0.0175846129876694,0.0279662325594366,0.0189042713169681,0.0215065656131665,0.00650008155356583 -lichen,lichen,north,,,Physcia.adscendens,Crop,5,0.0061978772206181,0.00485501825215725,0.00819431107983461,0.0061978772206181,0.00646734484973649,0.00175972170076663 -lichen,lichen,north,,,Physcia.adscendens,TameP,5,0.0217469866099191,0.0205259688525677,0.0269346862339065,0.0217469866099191,0.0231110724644053,0.00372969845233129 -lichen,lichen,north,,,Physcia.adscendens,RoughP,5,0.039996203554655,0.0376640264085737,0.0479047806634932,0.039996203554655,0.0418609321868831,0.00636136742819892 -lichen,lichen,south,,,Cladonia.chlorophaea,Loamy,5,0.118687300046851,0.104702736998946,0.12654114918338,0.118687300046851,0.117003347991407,0.0123251487872755 -lichen,lichen,south,,,Cladonia.chlorophaea,SandyLoam,5,0.119258055085243,0.104379389676667,0.12444806981178,0.122725360583689,0.116076296806775,0.0115812144030893 -lichen,lichen,south,,,Cladonia.chlorophaea,ClaySub,5,0.115647388648516,0.100225827670201,0.120420274007026,0.11648008810727,0.112104149326241,0.0125379204899668 -lichen,lichen,south,,,Cladonia.chlorophaea,RapidDrain,5,0.134401942825707,0.130919679999458,0.142386868085905,0.134401942825707,0.135822231258499,0.00674887938113901 -lichen,lichen,south,,,Cladonia.chlorophaea,Blowout,5,0.151003729060033,0.142629562152347,0.160102906059062,0.143701037126792,0.151258127765863,0.00859040607681507 -lichen,lichen,south,,,Cladonia.chlorophaea,ThinBreak,5,0.137503969297793,0.129839880347417,0.148096403740304,0.137503969297793,0.138488768710106,0.00920385085107052 -lichen,lichen,south,,,Cladonia.chlorophaea,Other,5,0.011592343091593,0.0046173071411171,0.0231715222749202,0.011592343091593,0.0131772510513215,0.0108696999060124 -lichen,lichen,south,,,Cladonia.chlorophaea,EnSeismic,5,0.0962488205728889,0.0753549922631135,0.252780357762154,0.0746380066039094,0.142260934924217,0.1103764472823 -lichen,lichen,south,,,Cladonia.chlorophaea,EnSoftLin,5,0.100106376262895,0.0629831331203498,0.25663036318437,0.0593528864488744,0.140489678275968,0.112766217720885 -lichen,lichen,south,,,Cladonia.chlorophaea,TrSoftLin,5,0.104765725082673,0.0622678835132489,0.285864107347038,0.104765725082673,0.152752793742919,0.12644472051553 -lichen,lichen,south,,,Cladonia.chlorophaea,HardLin,5,0.0224141883326856,0.0219404643210603,0.0240466025090097,0.0224141883326856,0.0228389695045971,0.00110409171662926 -lichen,lichen,south,,,Cladonia.chlorophaea,UrbInd,5,0.0316560982778314,0.0261042267475289,0.0343242569398769,0.0287494220624193,0.0306598280995116,0.0042085259092217 -lichen,lichen,south,,,Cladonia.chlorophaea,Wellsites,5,0.0355928387293783,0.0297480296972117,0.0456614857314296,0.0355928387293783,0.0370490799107639,0.00881310026886407 -lichen,lichen,south,,,Cladonia.chlorophaea,Crop,5,0.0115918691627171,0.0109797156544521,0.0127817951554016,0.0108908943675099,0.0118111694039124,0.000895132212105925 -lichen,lichen,south,,,Cladonia.chlorophaea,TameP,5,0.0528035523685076,0.0519157543218056,0.0592890736068868,0.0527988783208814,0.0548657123745536,0.00411763620408946 -lichen,lichen,south,,,Cladonia.chlorophaea,RoughP,5,0.0704617752927988,0.0683113023707642,0.0754893494676391,0.0704617752927988,0.0715386169482165,0.00392836590938631 -lichen,lichen,south,,,Physcia.adscendens,Loamy,5,0.165058834401252,0.151196844376258,0.179127371014315,0.169700398944145,0.164609273022419,0.0142193641222609 -lichen,lichen,south,,,Physcia.adscendens,SandyLoam,5,0.178172116249331,0.161926494649089,0.189941302784499,0.181481384725004,0.176731233762671,0.0154464567930835 -lichen,lichen,south,,,Physcia.adscendens,ClaySub,5,0.155520095046812,0.142809679634744,0.167690632468226,0.162178734164762,0.154965775121554,0.0123850335584002 -lichen,lichen,south,,,Physcia.adscendens,RapidDrain,5,0.133157166351654,0.123712598889612,0.139250440689584,0.138113163461797,0.132146689844523,0.00806228414697056 -lichen,lichen,south,,,Physcia.adscendens,Blowout,5,0.0780059275319079,0.0605615716646166,0.0817059444700948,0.0791009289771177,0.0731408926112592,0.0121622767884476 -lichen,lichen,south,,,Physcia.adscendens,ThinBreak,5,0.103023942244417,0.0819954494155731,0.103983652295498,0.103023942244417,0.0955490857463932,0.0122219699134275 -lichen,lichen,south,,,Physcia.adscendens,Other,5,0.108836563387276,0.0821453221454944,0.133452128995239,0.127814796703126,0.109107706996853,0.0269474171371931 -lichen,lichen,south,,,Physcia.adscendens,EnSeismic,5,0.140820975204423,0.129482190661842,0.19424153380181,0.134144710345317,0.156786420793645,0.0335710178960414 -lichen,lichen,south,,,Physcia.adscendens,EnSoftLin,5,0.106052188933668,0.0814400391043974,0.130572037732656,0.0868856909303751,0.104827215208426,0.0262751436146954 -lichen,lichen,south,,,Physcia.adscendens,TrSoftLin,5,0.157835534383738,0.120487024187209,0.209774497540774,0.157835534383738,0.163288539797896,0.0441400473178623 -lichen,lichen,south,,,Physcia.adscendens,HardLin,5,0.0165350535429243,0.0120621070012098,0.0195286140965431,0.0165350535429243,0.0160352349984333,0.00373898650121779 -lichen,lichen,south,,,Physcia.adscendens,UrbInd,5,0.0389262598086267,0.0294939748318359,0.0530990959477553,0.0431506202004028,0.0404214534693983,0.0124003014049701 -lichen,lichen,south,,,Physcia.adscendens,Wellsites,5,0.0361212212999052,0.0282999511156899,0.0508786677112775,0.0413073764753538,0.0385851768216347,0.0119892304602698 -lichen,lichen,south,,,Physcia.adscendens,Crop,5,0.00923975055880215,0.00688935614723793,0.00990739362805418,0.00923975055880215,0.00866135825638311,0.00174961488852405 -lichen,lichen,south,,,Physcia.adscendens,TameP,5,0.026713869603247,0.0180795051503958,0.0297402158652557,0.026713869603247,0.0245784040412905,0.00588581925861034 -lichen,lichen,south,,,Physcia.adscendens,RoughP,5,0.039320400519205,0.0281759149172245,0.0418780712232037,0.039320400519205,0.0359534518990116,0.00708818168961686 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Decid,5,0.047640807803491,0.0421034563656317,0.0521300438758573,0.0487558878166635,0.0473450096826365,0.0056501316974934 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Mixedwood,5,0.0279054540414128,0.0181658689236166,0.0367559849225421,0.0339606541972421,0.0278096939902147,0.00951815620753908 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Pine,5,0.0268788058190438,0.0209609632124494,0.0305097583077334,0.0258942184497686,0.0262889918843959,0.00524934568929363 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Spruce,5,0.0176721263875699,0.0146608207690292,0.0193257868464236,0.0155269078679997,0.0171502536690568,0.00231397502995575 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedBog,5,0.0312070092273878,0.0296707284210888,0.0333575322543523,0.0299192022319042,0.0313555861600363,0.00196530518299601 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedFen,5,0.031652259109271,0.0295795976387661,0.0337216938968473,0.0299192022319042,0.0315963400302195,0.00207244069441546 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedSwamp,5,0.0344943810177399,0.0306124249828509,0.0489375718055997,0.0299192022319042,0.0386608055204566,0.00930458029009551 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GrassHerb,5,0.0653279741583057,0.061888271218626,0.089856562855897,0.0701423452426464,0.0725277655971948,0.0173644289990184 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Shrub,5,0.0611030881192147,0.0442445083456052,0.0682165968089101,0.0701423452426464,0.0581276698433782,0.0144904584849003 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GraminoidFen,5,0.0329008222005278,0.0311059034360441,0.0791720523993423,0.0320501190239091,0.0501938242980929,0.0256718232770762 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Marsh,5,0.0329008222005278,0.0311059034360441,0.0791720523993423,0.0320501190239091,0.0501938242980929,0.0256718232770762 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyBog,5,0.0304764263774674,0.0254605104823409,0.0325605409298803,0.0320501190239091,0.0294402995205514,0.00368131508014908 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyFen,5,0.0304764263774674,0.0254605104823409,0.0325605409298803,0.0320501190239091,0.0294402995205514,0.00368131508014908 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbySwamp,5,0.0304764263774674,0.0207171959827077,0.0325605409298803,0.0320501190239091,0.027783252167868,0.00665855467631068 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecidR,5,0.0519264751930211,0.0421909761363827,0.0610656929689814,0.0664247062431653,0.0513344183248704,0.00990292477458262 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid1,5,0.0664247062431653,0.0454313130756783,0.161801935827499,0.0664247062431653,0.0956407900305149,0.0594616376704109 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid2,5,0.0403674064209935,0.0226811921693289,0.0610656929689814,0.0664247062431653,0.0413647407355767,0.0189529178903395 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid3,5,0.0664247062431653,0.0454313130756783,0.13984577572166,0.0664247062431653,0.0874581435990877,0.047869158265578 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid4,5,0.0664247062431653,0.0454313130756783,0.13984577572166,0.0664247062431653,0.0874581435990877,0.047869158265578 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwoodR,5,0.0403674064209935,1.86696880287542e-07,0.0610656929689814,0.0664247062431653,0.0319639391176817,0.0305989508139031 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood1,5,0.0664247062431653,0.0454313130756783,0.0985082759740731,0.0664247062431653,0.0708925437744992,0.0261644585445364 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood2,5,0.0664247062431653,0.0454313130756783,0.0927460852883475,0.0664247062431653,0.0679067027845017,0.0243051352751106 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood3,5,0.0664247062431653,0.0454313130756783,0.13984577572166,0.0664247062431653,0.0874581435990877,0.047869158265578 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood4,5,0.0664247062431653,0.0454313130756783,0.13984577572166,0.0664247062431653,0.0874581435990877,0.047869158265578 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPineR,5,0.0329977774300808,0.0275981212995825,0.055494150911045,0.0418434478038768,0.0389994170914637,0.0154321958967688 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine1,5,0.0286931152246994,0.00895589257187608,0.0383051796543584,0.0418434478038768,0.0246424860352798,0.0146575340381232 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine2,5,0.0418434478038768,0.030414980106852,0.13984577572166,0.0418434478038768,0.0762011545464462,0.0574167919857827 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine3,5,0.0418434478038768,0.030414980106852,0.13984577572166,0.0418434478038768,0.0762011545464462,0.0574167919857827 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine4,5,0.0418434478038768,0.030414980106852,0.13984577572166,0.0418434478038768,0.0762011545464462,0.0574167919857827 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruceR,5,0.0418434478038768,0.030414980106852,0.305015280094132,0.0418434478038768,0.134680455516499,0.154520697103704 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce1,5,0.0329977774300808,0.0114772753535638,0.0426296284343427,0.0418434478038768,0.0293376276172234,0.0174770304250845 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce2,5,0.0329977774300808,0.0196456208529556,0.0493468226750582,0.0418434478038768,0.0342994741972592,0.0151650436180593 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce3,5,0.0418434478038768,0.030414980106852,0.13984577572166,0.0418434478038768,0.0762011545464462,0.0574167919857827 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce4,5,0.0418434478038768,0.030414980106852,0.13984577572166,0.0418434478038768,0.0762011545464462,0.0574167919857827 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,HardLin,5,0.134939746303501,0.11313165192637,0.138252211851646,0.140140987080189,0.128430781048037,0.0150773054438261 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,EnSoftLin,5,0.135928985585703,0.114033932348076,0.146463088964367,0.108633567141907,0.131593724319033,0.0163096665223475 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,EnSeismic,5,0.12213448015733,0.0890416535123073,0.143994279540726,0.108633567141907,0.11836959804192,0.0281935358437126 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TrSoftLin,5,0.108633567141907,0.0713041482970402,0.138717152503764,0.108633567141907,0.105920961385117,0.0342224601999073 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Urban,5,0.134939746303501,0.11313165192637,0.138252211851646,0.140140987080189,0.128430781048037,0.0150773054438261 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Rural,5,0.134939746303501,0.11313165192637,0.138252211851646,0.140140987080189,0.128430781048037,0.0150773054438261 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Industrial,5,0.134939746303501,0.11313165192637,0.138252211851646,0.140140987080189,0.128430781048037,0.0150773054438261 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Well,5,0.129304108911142,0.0508739875681123,0.138060490769514,0.140140987080189,0.101626632226259,0.0457159602942333 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Crop,5,0.134939746303501,0.130856632631654,0.142628003268766,0.140140987080189,0.136371254913681,0.0058948625509627 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TameP,5,0.140140987080189,0.131558363868086,0.166944782085177,0.140140987080189,0.146328175511539,0.0200400340628098 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,RoughP,5,0.134939746303501,0.107211805137829,0.197177402914023,0.140140987080189,0.146414025010739,0.0530459646613359 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Decid,5,0.257670301669833,0.25268511782041,0.299216536351889,0.250263196314734,0.272180704204058,0.0242350996923886 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Mixedwood,5,0.275371757751266,0.246931841338979,0.300679741105016,0.267778296796379,0.274736706733593,0.0279617066651882 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Pine,5,0.191627552662267,0.185639377125035,0.22504720435644,0.191627552662267,0.201501274262095,0.0214876480685103 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Spruce,5,0.227199239938309,0.197719069725711,0.261529215102722,0.211937623492895,0.229168587007038,0.0318091845104133 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,TreedBog,5,0.148793830904151,0.132497404514779,0.155371350064858,0.13349759896445,0.144807122602355,0.0114762101186987 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,TreedFen,5,0.144475982710738,0.132978225672994,0.154438886014026,0.140460621172556,0.144313480947399,0.0109807508607257 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,TreedSwamp,5,0.249048354321576,0.223475542712116,0.289138875493625,0.219333664647888,0.254605490569608,0.0323842455145578 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,GrassHerb,5,0.2480296169969,0.237318154647019,0.315522864674229,0.243208536186666,0.268568532907938,0.0437249717988789 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Shrub,5,0.23362253489809,0.21634137243735,0.257032219262653,0.23362253489809,0.236470744324128,0.0201811658199 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,GraminoidFen,5,0.272335942420037,0.244138225439184,0.296606395166859,0.272335942420037,0.270211095150555,0.026687514195625 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Marsh,5,0.272335942420037,0.244138225439184,0.296606395166859,0.272335942420037,0.270211095150555,0.026687514195625 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,ShrubbyBog,5,0.129805148819312,0.116205825982704,0.158770458351882,0.123758665516073,0.134605575728791,0.0251125137099972 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,ShrubbyFen,5,0.129805148819312,0.116205825982704,0.158770458351882,0.123758665516073,0.134605575728791,0.0251125137099972 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,ShrubbySwamp,5,0.188745324781336,0.167005561530848,0.253626121411953,0.188745324781336,0.202711431947935,0.0494613150959488 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCDecidR,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCDecid1,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCDecid2,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCDecid3,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCDecid4,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCMixedwoodR,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCMixedwood1,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCMixedwood2,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCMixedwood3,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCMixedwood4,5,0.231790845755958,0.199250708118932,0.239359596218743,0.204735734181689,0.222063537492967,0.0204896232573866 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCPineR,5,0.334283211887097,0.223646034396249,0.350195977658891,0.252728055432474,0.297760629606335,0.0659734111545076 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCPine1,5,0.334283211887097,0.223646034396249,0.350195977658891,0.252728055432474,0.297760629606335,0.0659734111545076 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCPine2,5,0.334283211887097,0.223646034396249,0.350195977658891,0.252728055432474,0.297760629606335,0.0659734111545076 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCPine3,5,0.334283211887097,0.223646034396249,0.350195977658891,0.252728055432474,0.297760629606335,0.0659734111545076 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCPine4,5,0.334283211887097,0.223646034396249,0.350195977658891,0.252728055432474,0.297760629606335,0.0659734111545076 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCSpruceR,5,0.321916199827704,0.226786073940564,0.3362304790634,0.251426565070253,0.290385479825988,0.0569310858978242 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCSpruce1,5,0.321916199827704,0.226786073940564,0.3362304790634,0.251426565070253,0.290385479825988,0.0569310858978242 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCSpruce2,5,0.321916199827704,0.226786073940564,0.3362304790634,0.251426565070253,0.290385479825988,0.0569310858978242 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCSpruce3,5,0.321916199827704,0.226786073940564,0.3362304790634,0.251426565070253,0.290385479825988,0.0569310858978242 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,CCSpruce4,5,0.321916199827704,0.226786073940564,0.3362304790634,0.251426565070253,0.290385479825988,0.0569310858978242 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,HardLin,5,0.19071774622534,0.0974007399519308,0.240733568496156,0.111539574120126,0.17127771039873,0.0732372269463743 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,EnSoftLin,5,0.248284317219045,0.226169685664436,0.301392052670499,0.245765939186683,0.25939698564774,0.0420508019366517 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,EnSeismic,5,0.426961347747829,0.389435322188954,0.481650459050364,0.40014515763882,0.432415278327126,0.047044930339176 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,TrSoftLin,5,0.17814172514827,0.12158426489911,0.222472294628215,0.191095088735685,0.172686214591363,0.0514005542419291 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Urban,5,0.19071774622534,0.0974007399519308,0.240733568496156,0.111539574120126,0.17127771039873,0.0732372269463743 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Rural,5,0.19071774622534,0.0974007399519308,0.240733568496156,0.111539574120126,0.17127771039873,0.0732372269463743 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Industrial,5,0.19071774622534,0.0974007399519308,0.240733568496156,0.111539574120126,0.17127771039873,0.0732372269463743 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Well,5,0.204111777253966,0.157588378902068,0.3180994853061,0.135502134019886,0.226718306143626,0.0934254943677214 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,Crop,5,0.177273110573243,0.159339604167137,0.20698726239642,0.177273110573243,0.181419649055733,0.0243804143233458 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,TameP,5,0.106013821908483,0.0894430978024326,0.17346343225447,0.0952839991630323,0.12502933843141,0.0436710630773195 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,RoughP,5,0.274174686267773,0.223732051403491,0.374273016748219,0.274174686267773,0.292241558777143,0.0847262045748597 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,ClaySub,5,0.555220139484688,0.394498331723014,0.702736975528346,0.555220139484688,0.548583153087831,0.151762015935046 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Other,5,0.555220139484688,0.394498331723014,0.702736975528346,0.555220139484688,0.548583153087831,0.151762015935046 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,RapidDrain,5,0.634195131080269,0.466725133776188,0.702736975528346,0.555220139484688,0.598286530503394,0.123050914931351 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Loamy,5,0.585624995059312,0.517090683974723,0.733450970235701,0.585624995059312,0.612539176846356,0.112558481100448 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,SandyLoam,5,0.779017339675273,0.680988596683654,0.866425950439531,0.779017339675273,0.77884451338414,0.0956809767276209 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,ThinBreak,5,0.555220139484688,0.448231043418837,0.702736975528346,0.555220139484688,0.573244487005602,0.126605629946665 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Blowout,5,0.555220139484688,0.448231043418837,0.702736975528346,0.555220139484688,0.573244487005602,0.126605629946665 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Urban,5,0.583445114492641,0.499588697752921,0.825386051737734,0.487723056831294,0.639664312948093,0.170888464211465 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Rural,5,0.583445114492641,0.499588697752921,0.825386051737734,0.487723056831294,0.639664312948093,0.170888464211465 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Industrial,5,0.583445114492641,0.499588697752921,0.825386051737734,0.487723056831294,0.639664312948093,0.170888464211465 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Well,5,0.517387159135361,0.485351712822258,0.654799112289952,0.487723056831294,0.554938918286071,0.0915711112104892 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Mine,5,0.583445114492641,0.499588697752921,0.825386051737734,0.487723056831294,0.639664312948093,0.170888464211465 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,EnSoftLin,5,0.551988691379397,0.472907672172372,0.746855800537036,0.551988691379397,0.596628214316857,0.137830596967816 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,EnSeismic,5,0.551988691379397,0.472907672172372,0.746855800537036,0.551988691379397,0.596628214316857,0.137830596967816 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,HardLin,5,0.583445114492641,0.499588697752921,0.825386051737734,0.487723056831294,0.639664312948093,0.170888464211465 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,TrSoftLin,5,0.551988691379397,0.472907672172372,0.661295206321867,0.551988691379397,0.564149522780887,0.093422616108171 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,Crop,5,0.664605920258043,0.543810341278273,0.777406068435428,0.664605920258043,0.66361926030854,0.115409799954802 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,RoughP,5,0.661922813941234,0.543810341278273,0.734870844221513,0.664605920258043,0.641815026938221,0.0992280794953468 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,TameP,5,0.664605920258043,0.543810341278273,0.762991086100113,0.664605920258043,0.656411769140883,0.107913421931019 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,WetlandMargin,5,0.585444465824865,0.239308585750385,0.749205253519565,0.585444465824865,0.514520714062245,0.25399488681222 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,ClaySub,5,0.0667209228725318,0.0471871616217136,0.0745121978337484,0.0784267337005647,0.0619677799657342,0.0138015043715517 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Other,5,0.0667209228725318,0.0471871616217136,0.0745121978337484,0.0784267337005647,0.0619677799657342,0.0138015043715517 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,RapidDrain,5,0.0784267337005647,0.0580184128835627,0.182475942831045,0.0784267337005647,0.108634134915957,0.0683649493619883 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Loamy,5,0.0565859324870483,0.0491432799330989,0.0744882681216602,0.0784267337005647,0.0605808564697218,0.0127502513381831 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,SandyLoam,5,0.0522167395575833,0.022088416299373,0.106394166195476,0.0784267337005647,0.0614464088165364,0.0437090748528919 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,ThinBreak,5,0.0667209228725318,0.0526910929547497,0.0819102188921822,0.0784267337005647,0.0669999123068879,0.0144139003416867 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Blowout,5,0.0667209228725318,0.0526910929547497,0.0819102188921822,0.0784267337005647,0.0669999123068879,0.0144139003416867 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Urban,5,0.00922653651061864,0.0027634925310201,0.030904020696116,0.00922653651061864,0.0144698682404388,0.0153586078670068 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Rural,5,0.00922653651061864,0.0027634925310201,0.030904020696116,0.00922653651061864,0.0144698682404388,0.0153586078670068 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Industrial,5,0.00922653651061864,0.0027634925310201,0.030904020696116,0.00922653651061864,0.0144698682404388,0.0153586078670068 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Well,5,0.00242981545308046,4.85369257366382e-09,0.00684152516554301,0.00922653651061864,0.0029840741768291,0.00378031859912425 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Mine,5,0.00922653651061864,0.0027634925310201,0.030904020696116,0.00922653651061864,0.0144698682404388,0.0153586078670068 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,EnSoftLin,5,0.036098691627639,0.0108694320397718,0.0881199281160513,0.036098691627639,0.0452302386297233,0.0427459018693586 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,EnSeismic,5,0.036098691627639,0.0108694320397718,0.0881199281160513,0.036098691627639,0.0452302386297233,0.0427459018693586 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,HardLin,5,0.00922653651061864,0.0027634925310201,0.030904020696116,0.00922653651061864,0.0144698682404388,0.0153586078670068 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,TrSoftLin,5,0.0271735638239476,0.0226676570357414,0.0432617606269774,0.036098691627639,0.0315033862556764,0.0107685423453701 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,Crop,5,0.0206055204843312,0.0177111458771107,0.0251768860663094,0.0270020288489522,0.0211820007883143,0.00385182168133274 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,RoughP,5,0.0225176634330294,0.0183397065659335,0.0271753939444167,0.0270020288489522,0.0228490694789415,0.00442606378043097 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,TameP,5,0.0168291639536684,0.00689293851916878,0.0244434255031038,0.0270020288489522,0.0157357123464475,0.00870155989086529 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-mammal,mammal_winter,north,winter,hurdle,Moose_Winter,HardLin,5,0.0655704593026337,0.0386964513077742,0.0806664925562941,0.0681539858129174,0.061490055174022,0.0235635493086013 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,EnSoftLin,5,0.0499491621686334,0.0432606306115374,0.0917851939975131,0.0630037477010183,0.0622091308002257,0.0284117016778473 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,EnSeismic,5,0.0630037477010183,0.0470136277181822,0.0956609574711948,0.0630037477010183,0.0683350991735864,0.0261979131095086 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,TrSoftLin,5,0.0499491621686334,0.0381918030077569,0.0917851939975131,0.0630037477010183,0.0605195215989655,0.03010971736645 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,Urban,5,0.0655704593026337,0.0386964513077742,0.0806664925562941,0.0681539858129174,0.061490055174022,0.0235635493086013 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,Rural,5,0.0655704593026337,0.0386964513077742,0.0806664925562941,0.0681539858129174,0.061490055174022,0.0235635493086013 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,Industrial,5,0.0655704593026337,0.0386964513077742,0.0806664925562941,0.0681539858129174,0.061490055174022,0.0235635493086013 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,Well,5,0.0656654516139695,0.0626306304625554,0.0806664925562941,0.0681539858129174,0.0698137610034471,0.0110678450805123 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,Crop,5,0.0655704593026337,0.0539031526201264,0.0806664925562941,0.0681539858129174,0.0665589556114727,0.0144644680111463 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,TameP,5,0.0655704593026337,0.0400397821358317,0.0806664925562941,0.0681539858129174,0.0619378321167078,0.0226787995328322 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,RoughP,5,0.0681539858129174,0.0626306304625554,0.157698264126943,0.0681539858129174,0.097379003560495,0.0602979045619669 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,ClaySub,5,0.691634949610229,0.550848790356094,0.802465195536948,0.714170375192759,0.68019609479513,0.13479154309237 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Other,5,0.691634949610229,0.550848790356094,0.802465195536948,0.714170375192759,0.68019609479513,0.13479154309237 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,RapidDrain,5,0.710928475172056,0.569824590326749,0.802465195536948,0.714170375192759,0.693542699892822,0.133909499622018 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Loamy,5,0.614208250714799,0.535537936114048,0.793086839692097,0.714170375192759,0.65392920928007,0.134177594939503 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,SandyLoam,5,0.710928475172056,0.569824590326749,0.851537864173555,0.714170375192759,0.709900256105024,0.161650897739812 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,ThinBreak,5,0.714170375192759,0.493395564734683,0.821258910605355,0.714170375192759,0.665373424635133,0.164378669365967 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Blowout,5,0.714170375192759,0.493395564734683,0.821258910605355,0.714170375192759,0.665373424635133,0.164378669365967 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Urban,5,0.757773549137013,0.657116840415395,0.839728338581547,0.757773549137013,0.745609599201415,0.0963118964374143 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Rural,5,0.757773549137013,0.657116840415395,0.839728338581547,0.757773549137013,0.745609599201415,0.0963118964374143 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Industrial,5,0.757773549137013,0.657116840415395,0.839728338581547,0.757773549137013,0.745609599201415,0.0963118964374143 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Well,5,0.665294102611545,0.500844990155389,0.838316421030783,0.757773549137013,0.673408549679142,0.180300241875787 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Mine,5,0.757773549137013,0.657116840415395,0.839728338581547,0.757773549137013,0.745609599201415,0.0963118964374143 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,EnSoftLin,5,0.652008305064925,0.550739776228706,0.78332637135667,0.628634628150965,0.663407830088547,0.123697662896884 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,EnSeismic,5,0.652008305064925,0.550739776228706,0.78332637135667,0.628634628150965,0.663407830088547,0.123697662896884 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,HardLin,5,0.757773549137013,0.657116840415395,0.839728338581547,0.757773549137013,0.745609599201415,0.0963118964374143 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,TrSoftLin,5,0.628634628150965,0.425072256873216,0.765678825360405,0.628634628150965,0.599365165042208,0.174842335297327 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Crop,5,0.753168326869958,0.644219978099744,0.838316421030783,0.757773549137013,0.738775057178943,0.101908824049686 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,RoughP,5,0.753168326869958,0.5812621652318,0.838316421030783,0.757773549137013,0.717789119556295,0.133449191398277 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,TameP,5,0.753168326869958,0.660198982643474,0.838316421030783,0.757773549137013,0.745523667086661,0.0945203457137365 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,WetlandMargin,5,0.870880735779777,0.824509912771411,0.934646436936643,0.870880735779777,0.878612329229634,0.0544004215859729 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,ClaySub,5,0.0108355773911345,0.00400015925223842,0.0145163537839974,0.0141945654676911,0.00964996452335385,0.00522727711737457 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Other,5,0.0108355773911345,0.00400015925223842,0.0145163537839974,0.0141945654676911,0.00964996452335385,0.00522727711737457 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,RapidDrain,5,0.0141945654676911,0.00412645388529901,0.0149565220342368,0.0141945654676911,0.0106852617341246,0.0058358125599737 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Loamy,5,0.0141945654676911,0.00459311158353375,0.0160836483068433,0.0141945654676911,0.0112135235259748,0.00595036378174178 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,SandyLoam,5,0.0141945654676911,0.0101099232735522,0.0149565220342368,0.0141945654676911,0.0131064936286486,0.00313916311192032 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,ThinBreak,5,0.0147308793282016,0.0124614000782512,0.0267202462630917,0.0141945654676911,0.0185713582518418,0.00732893490342272 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Blowout,5,0.0147308793282016,0.0124614000782512,0.0267202462630917,0.0141945654676911,0.0185713582518418,0.00732893490342272 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Urban,5,9.37290365828135e-10,5.80885222938139e-10,1.02858504274146e-09,9.67698723675452e-10,8.39452871070888e-10,2.39628364395568e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Rural,5,9.37290365828135e-10,5.80885222938139e-10,1.02858504274146e-09,9.67698723675452e-10,8.39452871070888e-10,2.39628364395568e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Industrial,5,9.37290365828135e-10,5.80885222938139e-10,1.02858504274146e-09,9.67698723675452e-10,8.39452871070888e-10,2.39628364395568e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Well,5,8.90552084803996e-10,3.87060694623438e-10,1.24813630833937e-09,8.90552084803996e-10,8.29769567113585e-10,4.42230997130351e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Mine,5,9.37290365828135e-10,5.80885222938139e-10,1.02858504274146e-09,9.67698723675452e-10,8.39452871070888e-10,2.39628364395568e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,EnSoftLin,5,0.0367985674989132,0.018521560297194,0.0629261097189651,0.0367985674989132,0.0409860878361041,0.0232841750821887 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,EnSeismic,5,0.0367985674989132,0.018521560297194,0.0629261097189651,0.0367985674989132,0.0409860878361041,0.0232841750821887 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,HardLin,5,9.37290365828135e-10,5.80885222938139e-10,1.02858504274146e-09,9.67698723675452e-10,8.39452871070888e-10,2.39628364395568e-10 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,TrSoftLin,5,0.0022392793878417,0.00098112936391626,0.00374456156057241,0.00374705166332369,0.002382448206564,0.00138529642908284 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Crop,5,0.0051325112730342,0.00259608383885104,0.00661901820530916,0.00559204853976238,0.00475794570322879,0.00214570634790766 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,RoughP,5,0.00988095151082199,0.00435679506693851,0.0155976420996964,0.00988095151082199,0.0098898655353174,0.00559256086775056 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,TameP,5,0.00292203063138844,0.000742013980820096,0.00419414527275806,0.00325978967361389,0.00253230027213867,0.00173829261991583 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,WetlandMargin,5,2.01430416447776e-09,1.84918028139387e-09,3.24837282140699e-09,2.06303834717273e-09,2.3671775646272e-09,9.39547051285219e-10 -mite,mite,north,,,Ceratozetes.gracilis,WhiteSpruce,5,0.083324839926525,0.0773341259190752,0.0945808748551744,0.0783644708180673,0.0853402065330667,0.00855276292906888 -mite,mite,north,,,Ceratozetes.gracilis,Pine,5,0.058491231242114,0.0555475742526604,0.0633659637812255,0.0561087495328157,0.0592708435583154,0.00387279881709013 -mite,mite,north,,,Ceratozetes.gracilis,Deciduous,5,0.126688146057812,0.122367096566167,0.134062754480131,0.120032888034155,0.127932927536251,0.00601740175453024 -mite,mite,north,,,Ceratozetes.gracilis,Mixedwood,5,0.0990912857393305,0.0936387390038836,0.106178442160669,0.0922465109400969,0.099754338890101,0.0061787047771312 -mite,mite,north,,,Ceratozetes.gracilis,BlackSpruce,5,0.0210071881552033,0.0194431031984639,0.0243987448926687,0.0201312092719344,0.0216292215405341,0.00266784711827234 -mite,mite,north,,,Ceratozetes.gracilis,TreedFen,5,0.026580724324828,0.024242440270075,0.0332422257164936,0.0260589020761079,0.0282071028227065,0.00473764455368065 -mite,mite,north,,,Ceratozetes.gracilis,TreedSwamp,5,0.0749606880704819,0.0680207443603623,0.0931006713769451,0.0749606880704819,0.0790188543800901,0.0129650555502465 -mite,mite,north,,,Ceratozetes.gracilis,GraminoidFen,5,0.0274581642389803,0.0235853563324741,0.0322028810746652,0.0256468478624544,0.0277164575380178,0.00451584646869259 -mite,mite,north,,,Ceratozetes.gracilis,ShrubbyFen,5,0.0270291842209052,0.0233274790353779,0.0319634992742681,0.0254940252637942,0.0274147093852006,0.00460949355442051 -mite,mite,north,,,Ceratozetes.gracilis,ShrubbyBog,5,0.0221218552654225,0.0203526759367032,0.0258708245808148,0.0212207018552364,0.0228041297102978,0.00295575949415321 -mite,mite,north,,,Ceratozetes.gracilis,ShrubbySwamp,5,0.0787981143345215,0.0700959541686417,0.0912831982274847,0.0787981143345215,0.0801664992667429,0.0104554025659284 -mite,mite,north,,,Ceratozetes.gracilis,Marsh,5,0.0614924047415441,0.0503717579633235,0.0745768553412364,0.0549398690582114,0.0617365809631295,0.0133002434093838 -mite,mite,north,,,Ceratozetes.gracilis,Shrub,5,0.0690326282206128,0.0637085121852232,0.0855845655242005,0.0690326282206128,0.0728644764878167,0.0133405493919686 -mite,mite,north,,,Ceratozetes.gracilis,Grass,5,0.0717095541732357,0.0665149686947679,0.0985453710875707,0.0717095541732357,0.0801620849184831,0.0164795867929258 -mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruceR,5,0.107672074614269,0.0972477109913009,0.118541349512236,0.104199864858387,0.107929352562419,0.0109657793464986 -mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce1,5,0.123393977309761,0.112425193396225,0.139387320231618,0.123393977309761,0.125728485214081,0.0140274122599666 -mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce2,5,0.12437831599326,0.111359493905728,0.132705413454322,0.121062001485335,0.123126831939747,0.0114011890353867 -mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce3,5,0.12437831599326,0.111359493905728,0.132705413454322,0.121062001485335,0.123126831939747,0.0114011890353867 -mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce4,5,0.12437831599326,0.111359493905728,0.132705413454322,0.121062001485335,0.123126831939747,0.0114011890353867 -mite,mite,north,,,Ceratozetes.gracilis,CCPineR,5,0.113773520489961,0.101859256408014,0.122211261862114,0.108797637100679,0.112569868029736,0.0104271811989201 -mite,mite,north,,,Ceratozetes.gracilis,CCPine1,5,0.116106855588166,0.100441204830365,0.123976852017442,0.108122243613567,0.113246745405846,0.0120392008920083 -mite,mite,north,,,Ceratozetes.gracilis,CCPine2,5,0.11817066960193,0.100316838150487,0.122679046365626,0.107706392899407,0.113074011687537,0.0117087853519938 -mite,mite,north,,,Ceratozetes.gracilis,CCPine3,5,0.11817066960193,0.100316838150487,0.122679046365626,0.107706392899407,0.113074011687537,0.0117087853519938 -mite,mite,north,,,Ceratozetes.gracilis,CCPine4,5,0.11817066960193,0.100316838150487,0.122679046365626,0.107706392899407,0.113074011687537,0.0117087853519938 -mite,mite,north,,,Ceratozetes.gracilis,CCDeciduousR,5,0.144899037202292,0.133976042079909,0.148502963566285,0.134759239890019,0.14193514316751,0.00733510776173594 -mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous1,5,0.173136461097876,0.161422569448153,0.176484401334677,0.159272382892999,0.169983786435827,0.00768804108229138 -mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous2,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous3,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous4,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,CCMixedwoodR,5,0.144899037202292,0.133976042079909,0.148502963566285,0.134759239890019,0.14193514316751,0.00733510776173594 -mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood1,5,0.173136461097876,0.161422569448153,0.176484401334677,0.159272382892999,0.169983786435827,0.00768804108229138 -mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood2,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood3,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood4,5,0.134339082107598,0.127640012945417,0.1355719650486,0.12851467723662,0.132140904595935,0.00407933337080277 -mite,mite,north,,,Ceratozetes.gracilis,EnSeismic,5,0.0802806120357541,0.0732029866316614,0.108944026446484,0.0802806120357541,0.0889151563754509,0.0183077040123399 -mite,mite,north,,,Ceratozetes.gracilis,EnSoftLin,5,0.0877847291238477,0.0716619099530992,0.114953790660522,0.0797199425033713,0.0919192069743567,0.0218745202790536 -mite,mite,north,,,Ceratozetes.gracilis,TrSoftLin,5,0.0824456293556031,0.0689700330268259,0.109575945632792,0.0742439958268106,0.087725018747832,0.0202270595680831 -mite,mite,north,,,Ceratozetes.gracilis,HardLin,5,0.0268643924591711,0.0257899412772818,0.0304421627930103,0.0268643924591711,0.0278383582584405,0.0023610121346177 -mite,mite,north,,,Ceratozetes.gracilis,UrbInd,5,0.0514318415097621,0.0380292662597745,0.0597468130162695,0.0442950175704556,0.0497575520724983,0.0109608497443732 -mite,mite,north,,,Ceratozetes.gracilis,Wellsites,5,0.035050889042714,0.0311049144974151,0.0455477284585666,0.0328506872802035,0.0375357285513769,0.00732507152064465 -mite,mite,north,,,Ceratozetes.gracilis,Crop,5,0.0215366173604663,0.0212023183077577,0.027823845073315,0.0215366173604663,0.0237248493509573,0.00377213954135615 -mite,mite,north,,,Ceratozetes.gracilis,TameP,5,0.0350884778505926,0.0296620798510974,0.0366792367119695,0.0304807640689111,0.0335100259921961,0.00357425249741613 -mite,mite,north,,,Ceratozetes.gracilis,RoughP,5,0.0516992449980882,0.0487998406748331,0.0647307503735416,0.0516284245607066,0.0557447503800291,0.00818009586326218 -mite,mite,north,,,Trhypochthonius.tectorum,WhiteSpruce,5,0.0556561525490625,0.0510717677245686,0.0590786392356535,0.0510483651362441,0.0550945831947592,0.00398683118385017 -mite,mite,north,,,Trhypochthonius.tectorum,Pine,5,0.0594751004150133,0.0567146072015788,0.07263415395067,0.0594751004150133,0.0635901086572095,0.00817455694019514 -mite,mite,north,,,Trhypochthonius.tectorum,Deciduous,5,0.0535252270853639,0.0476609061082985,0.0610014811112496,0.0514776313631932,0.0542589538223274,0.00671799963208163 -mite,mite,north,,,Trhypochthonius.tectorum,Mixedwood,5,0.0563420244590419,0.0494241961076028,0.0610897108501066,0.0518923527010723,0.0554261228003333,0.00588626866974516 -mite,mite,north,,,Trhypochthonius.tectorum,BlackSpruce,5,0.0479250894638649,0.0425692505329721,0.053061593643466,0.0479250894638649,0.047801363444515,0.00523509405567491 -mite,mite,north,,,Trhypochthonius.tectorum,TreedFen,5,0.0408841194527538,0.0377784135790944,0.0459994038000058,0.0408841194527538,0.0415437643159498,0.00430137829845262 -mite,mite,north,,,Trhypochthonius.tectorum,TreedSwamp,5,0.0337675075759103,0.0315015742262157,0.0379398823268421,0.033440734757267,0.034577386415437,0.00328149143833793 -mite,mite,north,,,Trhypochthonius.tectorum,GraminoidFen,5,0.0407667314478653,0.0375105292015872,0.0453644606141766,0.0407667314478653,0.0412580654715362,0.00397523017374455 -mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyFen,5,0.040625299041178,0.0380204987264493,0.0451305060870398,0.040625299041178,0.0413277749642994,0.00367908136762045 -mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyBog,5,0.0468903066670746,0.0421032711447172,0.0516624938386451,0.0468903066670746,0.0468445466693048,0.00485242361640853 -mite,mite,north,,,Trhypochthonius.tectorum,ShrubbySwamp,5,0.0292316557779894,0.0280267417712238,0.0321894546760997,0.0286964469315836,0.0299491838822735,0.00208326484249253 -mite,mite,north,,,Trhypochthonius.tectorum,Marsh,5,0.0364031182916975,0.03246314137157,0.0387931260174801,0.0341610990357597,0.0358147412526288,0.00318818300839268 -mite,mite,north,,,Trhypochthonius.tectorum,Shrub,5,0.025223191055215,0.020275577906772,0.0300665662767551,0.0282145223452054,0.0251788966856238,0.00483753272341203 -mite,mite,north,,,Trhypochthonius.tectorum,Grass,5,0.0390477719581986,0.0270406150928457,0.0418778229533938,0.0390477719581986,0.0356863738057074,0.00785398705488737 -mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruceR,5,0.0467252252362432,0.0453107339176826,0.0515629452365753,0.0467252252362432,0.0479127175322202,0.00344675695471763 -mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce1,5,0.0439503346126213,0.0425636157475749,0.0475181466638955,0.0423468795516491,0.0446340028664967,0.0029027760022658 -mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce2,5,0.0443841971990541,0.0430576800412776,0.0470857489800855,0.043016752346317,0.0447823320518329,0.00228950512145567 -mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce3,5,0.0443841971990541,0.0430576800412776,0.0470857489800855,0.043016752346317,0.0447823320518329,0.00228950512145567 -mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce4,5,0.0443841971990541,0.0430576800412776,0.0470857489800855,0.043016752346317,0.0447823320518329,0.00228950512145567 -mite,mite,north,,,Trhypochthonius.tectorum,CCPineR,5,0.0526683392262,0.0494908781950819,0.0603392406871664,0.0518112255096306,0.0542593278877188,0.0059740696863024 -mite,mite,north,,,Trhypochthonius.tectorum,CCPine1,5,0.0468991106936687,0.0446094454502591,0.0499294662723947,0.0447974822354535,0.0471891769898958,0.00263347402531829 -mite,mite,north,,,Trhypochthonius.tectorum,CCPine2,5,0.0470893805229334,0.0447496174892123,0.0504045194737155,0.0449930704020798,0.0474865986654937,0.00280934882782067 -mite,mite,north,,,Trhypochthonius.tectorum,CCPine3,5,0.0470893805229334,0.0447496174892123,0.0504045194737155,0.0449930704020798,0.0474865986654937,0.00280934882782067 -mite,mite,north,,,Trhypochthonius.tectorum,CCPine4,5,0.0470893805229334,0.0447496174892123,0.0504045194737155,0.0449930704020798,0.0474865986654937,0.00280934882782067 -mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduousR,5,0.0514484824942495,0.0469845195905157,0.052906753720658,0.0451521693584135,0.050407563825017,0.00321163341168778 -mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous1,5,0.0404798408803705,0.0375927192417578,0.0440082227599156,0.0368681428962799,0.0407762801539658,0.00315994871488567 -mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous2,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous3,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous4,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwoodR,5,0.0514484824942495,0.0469845195905157,0.052906753720658,0.0451521693584135,0.050407563825017,0.00321163341168778 -mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood1,5,0.0404798408803705,0.0375927192417578,0.0440082227599156,0.0368681428962799,0.0407762801539658,0.00315994871488567 -mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood2,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood3,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood4,5,0.0425578952838125,0.0405173081997961,0.0458365008762514,0.039821927948205,0.0429957451821641,0.00274287276636226 -mite,mite,north,,,Trhypochthonius.tectorum,EnSeismic,5,0.0522085190169312,0.0252569549779169,0.0665538824210485,0.0544387764396551,0.0480639407088111,0.0242917296488739 -mite,mite,north,,,Trhypochthonius.tectorum,EnSoftLin,5,0.0357984916598279,0.0190297380136641,0.0645302317518731,0.0402530079505476,0.0399474391546608,0.0257997073771445 -mite,mite,north,,,Trhypochthonius.tectorum,TrSoftLin,5,0.0330350845777108,0.0153319420477188,0.0512108000402237,0.0363880404889003,0.0331889308199334,0.0196952425672342 -mite,mite,north,,,Trhypochthonius.tectorum,HardLin,5,0.0243958652679851,0.0239704518035738,0.0279997624131438,0.0243958652679851,0.0256743635254181,0.00210475588272506 -mite,mite,north,,,Trhypochthonius.tectorum,UrbInd,5,0.0191105703106928,0.0167840749551519,0.0272407405128375,0.0191105703106928,0.0212349933310677,0.00546676273320779 -mite,mite,north,,,Trhypochthonius.tectorum,Wellsites,5,0.023351034935016,0.021158057868554,0.03223617749299,0.023351034935016,0.0259815706015033,0.00569106451947394 -mite,mite,north,,,Trhypochthonius.tectorum,Crop,5,0.015382693809727,0.0151069200337959,0.016892523752058,0.0152304430995811,0.0158155351878053,0.00103439159129019 -mite,mite,north,,,Trhypochthonius.tectorum,TameP,5,0.0258915433874115,0.0222945289246262,0.0264680931726066,0.024941743213498,0.0248462640710173,0.00249172002079151 -mite,mite,north,,,Trhypochthonius.tectorum,RoughP,5,0.0328180516103049,0.0322239355913061,0.0387542589134784,0.0375661766298358,0.0348949895183175,0.00342630396737567 -mite,mite,south,,,Ceratozetes.gracilis,Loamy,5,0.0218423245463604,0.0173672203176517,0.0230295231243844,0.0218423245463604,0.020747214981276,0.00349328573027265 -mite,mite,south,,,Ceratozetes.gracilis,SandyLoam,5,0.0188962100537126,0.0162686755399601,0.0200379292106758,0.0185871549772747,0.0184312571346189,0.00217691199563813 -mite,mite,south,,,Ceratozetes.gracilis,ClaySub,5,0.0190796631779778,0.0156078918819073,0.0210172713505711,0.0190796631779778,0.018604719484685,0.00298067726778378 -mite,mite,south,,,Ceratozetes.gracilis,RapidDrain,5,0.00969791273666386,0.00942196936388417,0.0112386251640146,0.0110451655878437,0.010200805407554,0.000934771929061484 -mite,mite,south,,,Ceratozetes.gracilis,Blowout,5,0.0106020081675796,0.00863605999566094,0.0123463313279677,0.0108663421303504,0.0105398831320641,0.00211371743591744 -mite,mite,south,,,Ceratozetes.gracilis,ThinBreak,5,0.00878234749614848,0.00798269496694178,0.0107794669342902,0.00996372938352331,0.00924540029110673,0.00143456006902455 -mite,mite,south,,,Ceratozetes.gracilis,Other,5,0.0042686164608738,0.00063572314444851,0.00731890391266918,0.0042686164608738,0.00407391061994681,0.00329148805533948 -mite,mite,south,,,Ceratozetes.gracilis,EnSeismic,5,0.0128342993205689,0.00852724915739246,0.0633937793424426,0.0128342993205689,0.0301196175594858,0.0296767966386737 -mite,mite,south,,,Ceratozetes.gracilis,EnSoftLin,5,0.0100953485593809,0.00859879515579537,0.0518084711684424,0.0100953485593809,0.0252270354093779,0.0237484297671399 -mite,mite,south,,,Ceratozetes.gracilis,TrSoftLin,5,0.00945493320863686,0.00758629346095882,0.0565822367112004,0.00945493320863686,0.0263834449674863,0.0270499023163353 -mite,mite,south,,,Ceratozetes.gracilis,HardLin,5,0.0012818592428196,0.00122480067982412,0.00171071495716722,0.00176154072489266,0.00142873179782241,0.000252311336064879 -mite,mite,south,,,Ceratozetes.gracilis,UrbInd,5,0.00425941571595646,0.00295877473501209,0.00595057748445942,0.00425941571595646,0.00440787198450415,0.00153151605374925 -mite,mite,south,,,Ceratozetes.gracilis,Wellsites,5,0.00295291600474109,0.0021973086508854,0.00411443751717638,0.00295291600474109,0.00310781362870248,0.000980789777054813 -mite,mite,south,,,Ceratozetes.gracilis,Crop,5,0.00116588959329944,0.00104101704994527,0.00133284725072961,0.00116588959329944,0.00117831505621224,0.000167208502276051 -mite,mite,south,,,Ceratozetes.gracilis,TameP,5,0.0024464095231432,0.00214847243566944,0.00305858273470107,0.0023921447017999,0.00257807014953875,0.000460747234171761 -mite,mite,south,,,Ceratozetes.gracilis,RoughP,5,0.0023839015453601,0.00176469662219973,0.00260842275480983,0.00218127936434137,0.00224033670141993,0.000466899834329463 -mite,mite,south,,,Trhypochthonius.tectorum,Loamy,5,0.0499778174612043,0.0477160469108668,0.0521891286113536,0.0467852744100426,0.0500400973814781,0.00226406307817558 -mite,mite,south,,,Trhypochthonius.tectorum,SandyLoam,5,0.0427437044233035,0.0388352222189595,0.0446878887454315,0.0397630370091323,0.0419370284087006,0.00292844495366087 -mite,mite,south,,,Trhypochthonius.tectorum,ClaySub,5,0.0448532047061975,0.0434266302673582,0.0480060341777117,0.0429142869672478,0.0454925438914735,0.00235630079412914 -mite,mite,south,,,Trhypochthonius.tectorum,RapidDrain,5,0.0431738225185761,0.036600607606764,0.0449491670506471,0.0431738225185761,0.0415360440333195,0.0048551707088825 -mite,mite,south,,,Trhypochthonius.tectorum,Blowout,5,0.0612889561023144,0.0491998328469309,0.0746776432481998,0.0612889561023144,0.0622915416103894,0.013487238751435 -mite,mite,south,,,Trhypochthonius.tectorum,ThinBreak,5,0.0472879860660164,0.037920270451541,0.0523574915662019,0.0472879860660164,0.0458133113776339,0.00776225914513275 -mite,mite,south,,,Trhypochthonius.tectorum,Other,5,0.0366771544480599,0.0228268207831538,0.0785517999620398,0.0478734329425522,0.0465964414370044,0.0315527855316975 -mite,mite,south,,,Trhypochthonius.tectorum,EnSeismic,5,0.005718045734362,0.000756250016234319,0.00887832731960815,0.00888461717648373,0.00506648764138872,0.00403707236060029 -mite,mite,south,,,Trhypochthonius.tectorum,EnSoftLin,5,0.00350908933263554,0.000310987183741067,0.00741715216602833,0.00723292387135889,0.0038111174289397,0.00351580714176629 -mite,mite,south,,,Trhypochthonius.tectorum,TrSoftLin,5,0.00296547128398102,0.000271010557576361,0.00513825945876903,0.00426948908637977,0.00272565881367204,0.0023988556977813 -mite,mite,south,,,Trhypochthonius.tectorum,HardLin,5,0.0352820429856263,0.0249011898739522,0.0517606271764086,0.0281443034455901,0.0370353971906418,0.0145923801432061 -mite,mite,south,,,Trhypochthonius.tectorum,UrbInd,5,0.0197564607327612,0.0161346626233351,0.0233198049521763,0.0197564607327612,0.0196905028450629,0.00383354217797874 -mite,mite,south,,,Trhypochthonius.tectorum,Wellsites,5,0.0218127811081771,0.0174582402547921,0.0273373033988181,0.0219652759405907,0.0220697701960811,0.00550369496809574 -mite,mite,south,,,Trhypochthonius.tectorum,Crop,5,0.0174842052478879,0.0146182157223179,0.0189255858640754,0.0177171723605232,0.0168444896471002,0.00219178225580625 -mite,mite,south,,,Trhypochthonius.tectorum,TameP,5,0.0334374326549006,0.0271748172003896,0.0414968532162421,0.0334374326549006,0.0341507630943171,0.00734564079431658 -mite,mite,south,,,Trhypochthonius.tectorum,RoughP,5,0.0330917206876311,0.0281248674259134,0.0375615466118284,0.0330917206876311,0.0330472057370728,0.00502984292008219 -vascular_plant,vascular_plant,north,,,Galium.boreale,WhiteSpruce,5,0.136563367302205,0.119462518901444,0.14703521115999,0.128707314176715,0.134438167919802,0.0140790776061126 -vascular_plant,vascular_plant,north,,,Galium.boreale,Pine,5,0.116853425497967,0.107796441903968,0.124081762452193,0.108967866096832,0.115733912410419,0.00857502539967135 -vascular_plant,vascular_plant,north,,,Galium.boreale,Deciduous,5,0.25887511408307,0.239156447325757,0.263482889907708,0.243876909457892,0.252938955637841,0.0124338313554241 -vascular_plant,vascular_plant,north,,,Galium.boreale,Mixedwood,5,0.193041971414329,0.179396957180547,0.201982078860589,0.180205162477876,0.190818610539326,0.0113637588317406 -vascular_plant,vascular_plant,north,,,Galium.boreale,BlackSpruce,5,0.0197313184843524,0.0186615095379396,0.0216346630739543,0.0190889513235295,0.019992432400775,0.00162296400530185 -vascular_plant,vascular_plant,north,,,Galium.boreale,TreedFen,5,0.0190279322211574,0.0171394699429018,0.0204803027951359,0.0184868712710714,0.0188628976679575,0.00180798674115567 -vascular_plant,vascular_plant,north,,,Galium.boreale,TreedSwamp,5,0.0537157382799687,0.0494547113304226,0.0594834887289069,0.0502065849301497,0.0541128640771137,0.00517780601239197 -vascular_plant,vascular_plant,north,,,Galium.boreale,GraminoidFen,5,0.0207928426181494,0.0196811431002025,0.0226503378120183,0.0207928426181494,0.0210542335971933,0.0015438256424816 -vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyFen,5,0.0201391073392683,0.0190935576196826,0.0221089799761179,0.0201391073392683,0.0204418135172878,0.00167612468006209 -vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyBog,5,0.0199495272991526,0.0188220126503618,0.0218233356490728,0.0193388406568705,0.0201794222265195,0.00164466018474895 -vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbySwamp,5,0.045688982509881,0.042171496476318,0.0571441122739526,0.045688982509881,0.0487114824451972,0.00788260483962487 -vascular_plant,vascular_plant,north,,,Galium.boreale,Marsh,5,0.041347185000327,0.0369944475953885,0.0480790679841081,0.041347185000327,0.0422373156592065,0.00549952228800232 -vascular_plant,vascular_plant,north,,,Galium.boreale,Shrub,5,0.189304761120091,0.175516236345066,0.241103793907795,0.189304761120091,0.204712579589746,0.033439991322378 -vascular_plant,vascular_plant,north,,,Galium.boreale,Grass,5,0.214959292683282,0.180869477747652,0.249359372444126,0.191616359545112,0.215525986480311,0.0336975831668747 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruceR,5,0.154137545244941,0.132581336610888,0.172927485618722,0.143043678232451,0.153186792800721,0.0202008044704786 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce1,5,0.163315085825216,0.141002273364349,0.18905935770425,0.158059058434557,0.165296954029114,0.0246109466321505 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce2,5,0.160436563203294,0.14069222929203,0.183967841364971,0.148743886710094,0.161992104476718,0.021365400368824 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce3,5,0.160436563203294,0.14069222929203,0.183967841364971,0.148743886710094,0.161992104476718,0.021365400368824 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce4,5,0.160436563203294,0.14069222929203,0.183967841364971,0.148743886710094,0.161992104476718,0.021365400368824 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCPineR,5,0.143905674843488,0.117440734273828,0.157542491898074,0.126516675922557,0.13912009366266,0.0200221797521959 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine1,5,0.135255973929374,0.114079157254064,0.142460383178462,0.123115076680262,0.129792039810823,0.0148449152061657 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine2,5,0.134477552857653,0.11341349299191,0.141401321460665,0.12088426096238,0.128884997779635,0.0144383340887116 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine3,5,0.134477552857653,0.11341349299191,0.141401321460665,0.12088426096238,0.128884997779635,0.0144383340887116 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine4,5,0.134477552857653,0.11341349299191,0.141401321460665,0.12088426096238,0.128884997779635,0.0144383340887116 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduousR,5,0.208696634917917,0.175761239502858,0.219246203164378,0.186398225011703,0.200187968090386,0.022106120959872 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous1,5,0.256400751129383,0.223605802344556,0.280481606679469,0.232409451432954,0.253034900240866,0.0279823632616457 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous2,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous3,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous4,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwoodR,5,0.208696634917917,0.175761239502858,0.219246203164378,0.186398225011703,0.200187968090386,0.022106120959872 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood1,5,0.256400751129383,0.223605802344556,0.280481606679469,0.232409451432954,0.253034900240866,0.0279823632616457 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood2,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood3,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood4,5,0.196550402723055,0.177363867788528,0.223430883577534,0.189116187021577,0.199874753985579,0.0230468937687924 -vascular_plant,vascular_plant,north,,,Galium.boreale,EnSeismic,5,0.0675357940232228,0.0536641840810974,0.0782448772200584,0.0666893133709304,0.067002736116644,0.0134984598966857 -vascular_plant,vascular_plant,north,,,Galium.boreale,EnSoftLin,5,0.0666450469830431,0.0514688065567067,0.0769360972499699,0.0632085789748528,0.0651110464552629,0.0136601040156264 -vascular_plant,vascular_plant,north,,,Galium.boreale,TrSoftLin,5,0.0681813236346331,0.0554454641142448,0.0796107459686051,0.0681813236346331,0.0680202870748694,0.0125432834976175 -vascular_plant,vascular_plant,north,,,Galium.boreale,HardLin,5,0.032772954964339,0.0254952937216265,0.0427628821147054,0.0304014203144609,0.0337542163171502,0.00906837104577133 -vascular_plant,vascular_plant,north,,,Galium.boreale,UrbInd,5,0.032891069156295,0.0290596861735981,0.0426826279515852,0.0323859521239614,0.0350214724592512,0.00762900448359572 -vascular_plant,vascular_plant,north,,,Galium.boreale,Wellsites,5,0.0313114303488669,0.0258224080114288,0.0445788771357667,0.0313114303488669,0.03407323779985,0.0104681365081302 -vascular_plant,vascular_plant,north,,,Galium.boreale,Crop,5,0.0114819275038514,0.00962690543049514,0.0155602283722968,0.0114819275038514,0.0123694186188488,0.00300450571509112 -vascular_plant,vascular_plant,north,,,Galium.boreale,TameP,5,0.0336485279117461,0.0256580113642758,0.0375637064974261,0.0283837215953415,0.0320336236319229,0.00600032864643425 -vascular_plant,vascular_plant,north,,,Galium.boreale,RoughP,5,0.0579560450257088,0.045965364331808,0.0773913737984615,0.0532646872909717,0.0606155261777185,0.0164348500854686 -vascular_plant,vascular_plant,north,,,Vicia.americana,WhiteSpruce,5,0.0717211911881468,0.0649940227788211,0.0757806047387571,0.0717211911881468,0.0707611702697563,0.00560071424718983 -vascular_plant,vascular_plant,north,,,Vicia.americana,Pine,5,0.0717443897992296,0.0637388171549185,0.0792558735029598,0.0717443897992296,0.0716467451517877,0.00773413521691436 -vascular_plant,vascular_plant,north,,,Vicia.americana,Deciduous,5,0.174528296976248,0.164090538301261,0.183795585911188,0.174528296976248,0.173876959799232,0.0107120597059939 -vascular_plant,vascular_plant,north,,,Vicia.americana,Mixedwood,5,0.12738407433249,0.118327966346565,0.12914316163785,0.123903841395087,0.124825781574101,0.00609464551627694 -vascular_plant,vascular_plant,north,,,Vicia.americana,BlackSpruce,5,0.0108602686526196,0.00947682296052838,0.0111197345835797,0.0110635169948055,0.0104434018004056,0.000868359893238048 -vascular_plant,vascular_plant,north,,,Vicia.americana,TreedFen,5,0.0104889884001634,0.00918775668655501,0.0114259715545775,0.0111781283427943,0.0104110091403938,0.00125060799360988 -vascular_plant,vascular_plant,north,,,Vicia.americana,TreedSwamp,5,0.0474586407623415,0.0434617027113533,0.0573459768855838,0.0505384149026876,0.0495081405966026,0.00757780069669055 -vascular_plant,vascular_plant,north,,,Vicia.americana,GraminoidFen,5,0.012380186783363,0.0106055968142056,0.0129729819618124,0.0128602111397556,0.0119986050213911,0.00138377521512343 -vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyFen,5,0.0122885356189932,0.0107844229705085,0.0129771366500186,0.0127117113440904,0.0120371989894358,0.001277638072515 -vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyBog,5,0.0111679104948312,0.00984870753108598,0.01144241264329,0.0114521553910913,0.0107985890482843,0.000879046887316585 -vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbySwamp,5,0.0442619565088811,0.039395611852956,0.0514550187832082,0.0467803608934761,0.045111534045516,0.00637251444497983 -vascular_plant,vascular_plant,north,,,Vicia.americana,Marsh,5,0.0395269377197916,0.0379010981822006,0.0480740857526984,0.0426749909362641,0.0419761840756894,0.00575798827386886 -vascular_plant,vascular_plant,north,,,Vicia.americana,Shrub,5,0.124413496826489,0.11630879041929,0.148831794626625,0.129561071424494,0.129997351609217,0.0187159161627647 -vascular_plant,vascular_plant,north,,,Vicia.americana,Grass,5,0.140899561631048,0.132647046765579,0.149765706126522,0.140899561631048,0.141003833991578,0.00975138040532848 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruceR,5,0.106333838059199,0.10563563998252,0.1113390336656,0.113324612808195,0.107878609308115,0.00324098638860528 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce1,5,0.132673132079881,0.131014835763159,0.139245186106205,0.140904763899433,0.134539838012183,0.00426782271680661 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce2,5,0.122518637692463,0.118113328719225,0.134306251834235,0.129378591587472,0.125179320953689,0.0083140378258789 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce3,5,0.122518637692463,0.118113328719225,0.134306251834235,0.129378591587472,0.125179320953689,0.0083140378258789 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce4,5,0.122518637692463,0.118113328719225,0.134306251834235,0.129378591587472,0.125179320953689,0.0083140378258789 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCPineR,5,0.108086061678854,0.105116454412193,0.111847166658453,0.113106276644051,0.108442371914164,0.00352518043702876 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine1,5,0.1122188310588,0.109732769391169,0.12258810268514,0.121735348725543,0.115445950654567,0.00657248417948193 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine2,5,0.109183815724588,0.106720994046657,0.120537973445125,0.118682344001148,0.112706633163643,0.00705791950102736 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine3,5,0.109183815724588,0.106720994046657,0.120537973445125,0.118682344001148,0.112706633163643,0.00705791950102736 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine4,5,0.109183815724588,0.106720994046657,0.120537973445125,0.118682344001148,0.112706633163643,0.00705791950102736 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduousR,5,0.145906249437239,0.140931022371577,0.15495341081461,0.151623580611421,0.147413609979929,0.00700112483338789 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous1,5,0.180166516850587,0.168695392463167,0.188786472181105,0.183212683986236,0.178869118903198,0.010081669607544 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous2,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous3,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous4,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwoodR,5,0.145906249437239,0.140931022371577,0.15495341081461,0.151623580611421,0.147413609979929,0.00700112483338789 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood1,5,0.180166516850587,0.168695392463167,0.188786472181105,0.183212683986236,0.178869118903198,0.010081669607544 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood2,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood3,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood4,5,0.156982604814944,0.145251669372505,0.15939063660912,0.156982604814944,0.153284371506591,0.00726664394733218 -vascular_plant,vascular_plant,north,,,Vicia.americana,EnSeismic,5,0.216656015711896,0.168139707348619,0.254376282862556,0.216656015711896,0.213098910528715,0.0452535455491439 -vascular_plant,vascular_plant,north,,,Vicia.americana,EnSoftLin,5,0.240353254005159,0.182193409855272,0.287354412958843,0.240353254005159,0.235885270025637,0.0525043948865044 -vascular_plant,vascular_plant,north,,,Vicia.americana,TrSoftLin,5,0.185413846451138,0.143618351581936,0.21612482061455,0.185413846451138,0.182132121492675,0.03663912522577 -vascular_plant,vascular_plant,north,,,Vicia.americana,HardLin,5,0.0510142064754805,0.0476995560327749,0.0534135994986585,0.0494242045429297,0.0506844765474707,0.00289619110670257 -vascular_plant,vascular_plant,north,,,Vicia.americana,UrbInd,5,0.060270971424988,0.0527176972963101,0.0669155114807268,0.0570164101210413,0.0598116387590278,0.00755833843006598 -vascular_plant,vascular_plant,north,,,Vicia.americana,Wellsites,5,0.0495816235777512,0.045261299115898,0.0675981711099802,0.0583800066861835,0.0547080768995733,0.0120228518497499 -vascular_plant,vascular_plant,north,,,Vicia.americana,Crop,5,0.0198021833360757,0.0187130492427477,0.0215978803800823,0.020499648487122,0.0200793479234006,0.00155071434603584 -vascular_plant,vascular_plant,north,,,Vicia.americana,TameP,5,0.0435685547091363,0.0402056228771878,0.0533172713621298,0.0435685547091363,0.0457946494684893,0.00709067313037913 -vascular_plant,vascular_plant,north,,,Vicia.americana,RoughP,5,0.0428632794956036,0.0372440489603054,0.0534178816037923,0.0428632794956036,0.0444803287325393,0.00836089560838824 -vascular_plant,vascular_plant,south,,,Galium.boreale,Loamy,5,0.128653205010673,0.114611972972335,0.130784674892184,0.129566548831882,0.123883607184517,0.00838623611422754 -vascular_plant,vascular_plant,south,,,Galium.boreale,SandyLoam,5,0.0836110810472021,0.0746816948024742,0.0894208141830331,0.0846341790254643,0.0821153995584725,0.00751049498598007 -vascular_plant,vascular_plant,south,,,Galium.boreale,ClaySub,5,0.101500964583409,0.0940741502041846,0.108970943759895,0.106582920663178,0.101462761523999,0.00731517240310769 -vascular_plant,vascular_plant,south,,,Galium.boreale,RapidDrain,5,0.0388994289485226,0.0346245997860596,0.0529303847658474,0.0448318785090138,0.0424505639887575,0.00987053097134808 -vascular_plant,vascular_plant,south,,,Galium.boreale,Blowout,5,0.0506231282331206,0.0397681707601058,0.0574808564556098,0.0506231282331206,0.0488032044086913,0.00890397864448909 -vascular_plant,vascular_plant,south,,,Galium.boreale,ThinBreak,5,0.0479802424154928,0.0420075163241584,0.0517461800601525,0.051022562219615,0.0472278000794808,0.00488658793646957 -vascular_plant,vascular_plant,south,,,Galium.boreale,Other,5,0.0106061234511555,0.00720081589340935,0.0217479373094132,0.0177197087652051,0.0136291572357968,0.00750330686270611 -vascular_plant,vascular_plant,south,,,Galium.boreale,EnSeismic,5,0.0472125133205467,0.0295924639744709,0.110125197726374,0.0287456404184259,0.0636144790463627,0.0421297958204094 -vascular_plant,vascular_plant,south,,,Galium.boreale,EnSoftLin,5,0.0457108677001631,0.0342927417032321,0.133999583987908,0.0329811808897455,0.0738711315094049,0.0544940604720431 -vascular_plant,vascular_plant,south,,,Galium.boreale,TrSoftLin,5,0.0254268182100485,0.0116038912895437,0.0640062980763588,0.0143164876649795,0.0337396409014619,0.0288740328272036 -vascular_plant,vascular_plant,south,,,Galium.boreale,HardLin,5,0.0032621931802875,0.00285851385150083,0.00701707647763527,0.00538608376568717,0.00451424153984983,0.00226371892322936 -vascular_plant,vascular_plant,south,,,Galium.boreale,UrbInd,5,0.00523304185300579,0.00516680867336443,0.00698867393616868,0.00519980939835304,0.00583554776095676,0.00110498090685346 -vascular_plant,vascular_plant,south,,,Galium.boreale,Wellsites,5,0.00835585771334364,0.00699275850468526,0.00923375703992824,0.00769427442003421,0.0081731242777985,0.00114681019974826 -vascular_plant,vascular_plant,south,,,Galium.boreale,Crop,5,0.00170386065696764,0.00159546521345581,0.00280933357726183,0.00225132683231577,0.00206801467544986,0.00067868464225799 -vascular_plant,vascular_plant,south,,,Galium.boreale,TameP,5,0.00370735476367147,0.00294261667373477,0.00558659216344689,0.00460921237816997,0.00410416049108617,0.00137496323633074 -vascular_plant,vascular_plant,south,,,Galium.boreale,RoughP,5,0.00542654337673869,0.00450815448744484,0.00938121797095186,0.00706698519527935,0.00652782936700246,0.00267894412351735 -vascular_plant,vascular_plant,south,,,Vicia.americana,Loamy,5,0.280824609747584,0.267644583576923,0.289709776497706,0.273848614363572,0.279520051194194,0.0111565423059792 -vascular_plant,vascular_plant,south,,,Vicia.americana,SandyLoam,5,0.243407150088342,0.234204092076879,0.250601947319584,0.239431294773893,0.242922321341985,0.00832583255140513 -vascular_plant,vascular_plant,south,,,Vicia.americana,ClaySub,5,0.29707235668037,0.282488985824439,0.305118529233993,0.291486932950625,0.294780505613319,0.0118392065552878 -vascular_plant,vascular_plant,south,,,Vicia.americana,RapidDrain,5,0.149586849572318,0.132500335286096,0.175603735182626,0.149586849572318,0.152479085699985,0.0216357444325811 -vascular_plant,vascular_plant,south,,,Vicia.americana,Blowout,5,0.106950650814662,0.0907039605371348,0.121336311234738,0.103869081093715,0.106769891695465,0.0160956019903277 -vascular_plant,vascular_plant,south,,,Vicia.americana,ThinBreak,5,0.165570611241508,0.152106899610986,0.186190099937036,0.165570611241508,0.167794270266068,0.0186214443757594 -vascular_plant,vascular_plant,south,,,Vicia.americana,Other,5,0.102651600983928,0.0624149706900878,0.11235472915199,0.102651600983928,0.0922572898504469,0.0286236891835733 -vascular_plant,vascular_plant,south,,,Vicia.americana,EnSeismic,5,0.0987770601076429,0.0590846473435492,0.125153182170927,0.142317281363727,0.0937633038233823,0.0369262953861683 -vascular_plant,vascular_plant,south,,,Vicia.americana,EnSoftLin,5,0.124641821593195,0.0681868022186765,0.173426846411391,0.184942717247886,0.121843755999216,0.0520061572176103 -vascular_plant,vascular_plant,south,,,Vicia.americana,TrSoftLin,5,0.0632469144327385,0.0350786082680709,0.083335221572322,0.0865561569046063,0.0607365434283008,0.0244516505628151 -vascular_plant,vascular_plant,south,,,Vicia.americana,HardLin,5,0.034768741467538,0.0317254788925045,0.0411641044703837,0.0319213954295495,0.0358461107697019,0.00503353926558842 -vascular_plant,vascular_plant,south,,,Vicia.americana,UrbInd,5,0.0317815932567955,0.0271544908564896,0.0356957214790492,0.0250464912812154,0.0316935547923611,0.00440557843195001 -vascular_plant,vascular_plant,south,,,Vicia.americana,Wellsites,5,0.0341400292126126,0.0279864934648464,0.0423488240839157,0.0262553863998158,0.034854112138194,0.00723959324487174 -vascular_plant,vascular_plant,south,,,Vicia.americana,Crop,5,0.0239011853373428,0.0220577047645298,0.0264567603480559,0.0226673334870154,0.0241526345182289,0.00219200225599506 -vascular_plant,vascular_plant,south,,,Vicia.americana,TameP,5,0.0312372001895896,0.0292297510784975,0.0351771559180196,0.0306301444015498,0.0319120315749738,0.00324668537783287 -vascular_plant,vascular_plant,south,,,Vicia.americana,RoughP,5,0.0374123655632768,0.0359902090243626,0.0432584803569596,0.0374123655632768,0.0388877931026711,0.00439952763870878 +bird,bird,north,,,AMRO,SpruceR,100,0.0453157981893744,0.0417209620098413,0.0478817442652549,0.0460214970922903,0.0450996151685374,0.00220137110164757 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+bird,bird,north,,,AMRO,Spruce7,100,0.0194377202338493,0.0186978319847234,0.0204101420752993,0.0212606901038818,0.0195184595048535,0.000691549779795947 +bird,bird,north,,,AMRO,Spruce8,100,0.0189094286528338,0.0180440903070491,0.0199160214363853,0.0204546292796539,0.0189189920295604,0.000740564512162788 +bird,bird,north,,,AMRO,PineR,100,0.0555206607956055,0.052173472728493,0.0598873737678453,0.0535435973650151,0.0558949522042913,0.00302918984006682 +bird,bird,north,,,AMRO,Pine1,100,0.0403098583543785,0.0383534609656472,0.0422961019622303,0.0405470054004968,0.0403027903741779,0.0015937523232536 +bird,bird,north,,,AMRO,Pine2,100,0.0360244441322661,0.0341848281115691,0.0375061145229189,0.0366127459514038,0.0359223387445296,0.00139978027987082 +bird,bird,north,,,AMRO,Pine3,100,0.0311749531135039,0.0296691953245088,0.0325518063593093,0.0321095693334898,0.0311499145296897,0.00120478566236032 +bird,bird,north,,,AMRO,Pine4,100,0.0282918577118069,0.0270230378344934,0.0295920849381923,0.0293371593640406,0.028372440164808,0.00107395202317428 +bird,bird,north,,,AMRO,Pine5,100,0.0264740067539667,0.0253044443953814,0.0277393710869579,0.0273782680404298,0.0265092094097746,0.000990284165600859 +bird,bird,north,,,AMRO,Pine6,100,0.0251306675409661,0.0240428268892339,0.0264133549029606,0.0258985802241854,0.0251758158678255,0.000962748607422044 +bird,bird,north,,,AMRO,Pine7,100,0.0241588173820796,0.0230239326026757,0.0255272447025791,0.0247356975011427,0.0241893698679639,0.000996973262973239 +bird,bird,north,,,AMRO,Pine8,100,0.0232956357277545,0.0221048991722035,0.0249270677884672,0.0237978880218547,0.0234485246732031,0.00108913678458622 +bird,bird,north,,,AMRO,DecidR,100,0.0232931226521976,0.0222016870658335,0.0244401093910209,0.0237579890560399,0.0232961375501765,0.000865947283513694 +bird,bird,north,,,AMRO,Decid1,100,0.0309709740908135,0.0298782916059096,0.0323033498577838,0.0315584625182446,0.0310006480912542,0.0009437491423519 +bird,bird,north,,,AMRO,Decid2,100,0.0326312142814857,0.0315511971474788,0.0339227119249816,0.0331998686079368,0.0326340695806031,0.000970224220876992 +bird,bird,north,,,AMRO,Decid3,100,0.0327893528909598,0.031829940191831,0.0340082431202826,0.0333598077618143,0.0328155206156215,0.000941337056806172 +bird,bird,north,,,AMRO,Decid4,100,0.0312024891837979,0.0302910179124397,0.0323043531507346,0.0317500403920757,0.0312455734444536,0.00087495888340753 +bird,bird,north,,,AMRO,Decid5,100,0.0289017981518616,0.027985270603716,0.0299772131111922,0.0293809707313715,0.0289228639101217,0.000822270070245104 +bird,bird,north,,,AMRO,Decid6,100,0.0262698495956491,0.0254070061432805,0.0272445729045223,0.0267049789894919,0.0262950709568848,0.000802896205088084 +bird,bird,north,,,AMRO,Decid7,100,0.0235567750613208,0.0226962186146319,0.024600798537253,0.0239651842606415,0.0236028968852037,0.000813034313843839 +bird,bird,north,,,AMRO,Decid8,100,0.0208461277841236,0.0200789461586309,0.0220593946620292,0.0212996862068994,0.0209830472645792,0.000838216227616122 +bird,bird,north,,,AMRO,MixedwoodR,100,0.0225136263044904,0.0213342027082923,0.0236060273618158,0.0235968351556159,0.0225316673252772,0.000899580637652627 +bird,bird,north,,,AMRO,Mixedwood1,100,0.030048308713013,0.0286868863404555,0.0311921917707368,0.0313443968700871,0.0299838568293439,0.00102758552966396 +bird,bird,north,,,AMRO,Mixedwood2,100,0.0316184846573078,0.030328949819901,0.0328202095156922,0.0329746690631811,0.0315638519390332,0.00106631887868526 +bird,bird,north,,,AMRO,Mixedwood3,100,0.0318255612736138,0.0305335444567056,0.033124910682676,0.0331335233264806,0.0317394907052747,0.00104730828569318 +bird,bird,north,,,AMRO,Mixedwood4,100,0.0302999906488438,0.029008194273824,0.0314412194594963,0.0315346752432942,0.0302210700920481,0.000980610758380023 +bird,bird,north,,,AMRO,Mixedwood5,100,0.0280343820989471,0.0268603067209121,0.0289687780152748,0.0291816753271841,0.0279745245236438,0.000918108090542574 +bird,bird,north,,,AMRO,Mixedwood6,100,0.0254575630345778,0.0244342817834118,0.0263679485538951,0.0265238352270822,0.0254328765919638,0.000881007992464943 +bird,bird,north,,,AMRO,Mixedwood7,100,0.022863521049402,0.0218235590944946,0.0237862786883488,0.0238026249249641,0.0228289493131665,0.000869979499058659 +bird,bird,north,,,AMRO,Mixedwood8,100,0.020315319727905,0.0193118628641393,0.0213621971982815,0.0211552073327846,0.0202949734371198,0.000875114583424401 +bird,bird,north,,,AMRO,TreedBogR,100,0.0343480811202649,0.0320064730803105,0.0370940170972134,0.0320053956170601,0.0345443106076889,0.0026553915483415 +bird,bird,north,,,AMRO,TreedBog1,100,0.045799440272439,0.0426813875616046,0.0492629068348375,0.0425137445589404,0.0455107196072575,0.00376625818550088 +bird,bird,north,,,AMRO,TreedBog2,100,0.0481976373102632,0.0447750313837096,0.051856104409837,0.0447249523823355,0.0478620132095901,0.00434594614151869 +bird,bird,north,,,AMRO,TreedBog3,100,0.0484833437575021,0.0449377154976167,0.0521114388376198,0.0449404132061633,0.0481077311747481,0.00453042143966834 +bird,bird,north,,,AMRO,TreedBog4,100,0.046115747844317,0.0429188620494475,0.0496099487113834,0.0427718272455254,0.0458155207730335,0.00419980151236573 +bird,bird,north,,,AMRO,TreedBog5,100,0.0425931936921652,0.0397893175952824,0.045979852530471,0.0395803529352897,0.0424352117245306,0.00364543828359106 +bird,bird,north,,,AMRO,TreedBog6,100,0.0386349528922134,0.0361415631335507,0.0419438938964989,0.0359754108602334,0.0386207093374783,0.00298901359393932 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+bryophyte,bryophyte,north,,,Bryum.All,CCPine4,100,0.164977496046308,0.130535139764519,0.21665240625425,0.166830898209846,0.17199103838715,0.0442481855074283 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduousR,100,0.157596731010677,0.123533232086057,0.208001702809459,0.161533823124016,0.165141749142023,0.040998313413279 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous1,100,0.174218454026145,0.144083879398039,0.220753158828882,0.17800935952687,0.180607072017892,0.0394768195415169 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous2,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous3,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous4,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwoodR,100,0.157596731010677,0.123533232086057,0.208001702809459,0.161533823124016,0.165141749142023,0.040998313413279 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood1,100,0.174218454026145,0.144083879398039,0.220753158828882,0.17800935952687,0.180607072017892,0.0394768195415169 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood2,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood3,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood4,100,0.148393548241215,0.118613995184231,0.200649126956334,0.150834982909368,0.155616408711326,0.0391488200873629 +bryophyte,bryophyte,north,,,Bryum.All,EnSeismic,100,0.144697756355913,0.106455963118396,0.213814498153731,0.143247261154779,0.153313603030612,0.0430534029880031 +bryophyte,bryophyte,north,,,Bryum.All,EnSoftLin,100,0.188593400131986,0.13489799210619,0.262675279730385,0.181976104710237,0.191920799206589,0.0501550611864937 +bryophyte,bryophyte,north,,,Bryum.All,TrSoftLin,100,0.172781065066998,0.130912601607773,0.239877322835837,0.169203477599876,0.182372128159911,0.0486065246892691 +bryophyte,bryophyte,north,,,Bryum.All,HardLin,100,0.125344752959067,0.0816348221340244,0.194674661167178,0.124691301578451,0.13135404289831,0.0438947644362751 +bryophyte,bryophyte,north,,,Bryum.All,UrbInd,100,0.163159462223434,0.12165320082971,0.215083386835005,0.15870235487759,0.165659762652791,0.0431162057551725 +bryophyte,bryophyte,north,,,Bryum.All,Wellsites,100,0.128697854277048,0.0942127385784941,0.178474955370808,0.133875416816634,0.137743243872567,0.0390702844483414 +bryophyte,bryophyte,north,,,Bryum.All,Crop,100,0.0801125376147465,0.0573689230339833,0.10793502742471,0.078395085879973,0.0833701271570822,0.0247903778421112 +bryophyte,bryophyte,north,,,Bryum.All,TameP,100,0.142320544999387,0.102688206856692,0.191821132248881,0.14146232517738,0.148652250546317,0.0414507857811986 +bryophyte,bryophyte,north,,,Bryum.All,RoughP,100,0.150427253442616,0.104574844510419,0.197195675278567,0.143669438263278,0.152296757163809,0.0413605697505934 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,WhiteSpruce,100,0.164860582477884,0.134853069652601,0.192501350329236,0.176935668903147,0.164541647587355,0.0235667712135083 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Pine,100,0.159315579787524,0.135810160052821,0.19221984900916,0.172791155095638,0.162396352906267,0.0240737425920457 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Deciduous,100,0.152620332731145,0.125559515806406,0.177303009454765,0.162052893569508,0.151201902132568,0.021964180405735 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Mixedwood,100,0.146845501537219,0.118745931423119,0.176057337771945,0.15788444654738,0.147800622561227,0.0233080289026462 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,BlackSpruce,100,0.0636219224476367,0.0479707379628998,0.0809660234586989,0.0685353715648879,0.0642406684618674,0.013078433234681 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedFen,100,0.0715804201550537,0.0567860494994432,0.0923505745362619,0.0794290899103082,0.0733195191139247,0.0142957214616244 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedSwamp,100,0.114071149047979,0.0849060058805629,0.14737370504612,0.122922619803698,0.113731093315728,0.0229357074952571 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,GraminoidFen,100,0.075392110524871,0.0613525307033844,0.0946612382718551,0.0833874009572022,0.0764218893131942,0.0143540270227847 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyFen,100,0.0751223025630472,0.06005814009259,0.0944880060770491,0.0826619615495143,0.0760752184199071,0.0143929335402333 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyBog,100,0.0649062639453466,0.0495698429606779,0.0828124662429036,0.0696158682654045,0.0652275419814701,0.0131620133125403 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbySwamp,100,0.112483916970666,0.0834823671082454,0.138943072543594,0.121979163778046,0.112730020522635,0.0225290797761646 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Marsh,100,0.109962319012913,0.0854587953975059,0.138798552733471,0.121750013890524,0.112529300414951,0.0234829416497302 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Shrub,100,0.267761144857668,0.198247422929589,0.33075417515222,0.275203776452487,0.264894285670303,0.0477660444999492 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Grass,100,0.281601177417326,0.218068745709165,0.348157526671373,0.292406492273734,0.281477040189678,0.047950205571844 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruceR,100,0.327599027698267,0.273802979781418,0.388497733841541,0.345415843034206,0.329287066453995,0.0505807619047001 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce1,100,0.292927873303288,0.235927431716159,0.361067692048257,0.310222319426016,0.297510047083707,0.0531904647956347 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce2,100,0.329202112101388,0.274146177337252,0.400276818617247,0.35184667493467,0.333661084466649,0.0518068411979977 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce3,100,0.329202112101388,0.274146177337252,0.400276818617247,0.35184667493467,0.333661084466649,0.0518068411979977 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce4,100,0.329202112101388,0.274146177337252,0.400276818617247,0.35184667493467,0.333661084466649,0.0518068411979977 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPineR,100,0.309699131480725,0.261927321467136,0.377842746489874,0.332237563055896,0.315487330574139,0.051319649761016 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine1,100,0.333401270464723,0.281322764286266,0.403879894136602,0.354005283762296,0.337697835482731,0.0511536380998573 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine2,100,0.335924997286458,0.288095708500947,0.406500455717083,0.359033033466831,0.342120889637612,0.0507815332414888 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine3,100,0.335924997286458,0.288095708500947,0.406500455717083,0.359033033466831,0.342120889637612,0.0507815332414888 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine4,100,0.335924997286458,0.288095708500947,0.406500455717083,0.359033033466831,0.342120889637612,0.0507815332414888 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduousR,100,0.316181501482197,0.247656801002324,0.372557753458093,0.329698896772244,0.311961297382621,0.0487628824017863 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous1,100,0.305489684287924,0.241540271153473,0.361353489611133,0.321691125624866,0.303659775851319,0.0482209397721768 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous2,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous3,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous4,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwoodR,100,0.316181501482197,0.247656801002324,0.372557753458093,0.329698896772244,0.311961297382621,0.0487628824017863 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood1,100,0.305489684287924,0.241540271153473,0.361353489611133,0.321691125624866,0.303659775851319,0.0482209397721768 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood2,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood3,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood4,100,0.295377254337919,0.227696320389351,0.358423799144759,0.311263402327306,0.294860244373334,0.047411935326118 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSeismic,100,0.150985771257141,0.108985125485924,0.203760486203204,0.165838564517478,0.154761579274989,0.0376158245468808 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSoftLin,100,0.151316979581675,0.113589990474606,0.209157226138348,0.168995137454078,0.15718426402353,0.0382136496231722 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TrSoftLin,100,0.16296753454101,0.123136745895139,0.233633794921744,0.180401709818175,0.169394170607427,0.0411322246734813 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,HardLin,100,0.103304888737869,0.0785164286281741,0.125267800257876,0.113196196589015,0.104029885056066,0.0184678270623457 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,UrbInd,100,0.114956522020907,0.0922954940364546,0.150029660568624,0.129273397383927,0.11875395830153,0.02535416927892 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Wellsites,100,0.121474811328068,0.101281784979821,0.157914609282095,0.135555384778656,0.126014514581836,0.0230680233541066 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Crop,100,0.0737908355008305,0.0584649754084205,0.0895126240155313,0.080469463459423,0.0741255038154045,0.0124772267177793 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TameP,100,0.133421828571221,0.108351381678939,0.166819933476938,0.148781802724197,0.136183617289012,0.0220364733902662 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,RoughP,100,0.140355942773337,0.10414373013482,0.173787330755864,0.153373422859104,0.139859378682531,0.0269619211475122 +bryophyte,bryophyte,south,,,Bryum.All,Loamy,100,0.137179992349134,0.0793419624933468,0.188027589410644,0.156609764097912,0.134694410102242,0.041253164627961 +bryophyte,bryophyte,south,,,Bryum.All,SandyLoam,100,0.194953879720173,0.104827190924314,0.25080374707394,0.209805018041589,0.181826254857698,0.0544962966460969 +bryophyte,bryophyte,south,,,Bryum.All,ClaySub,100,0.144702665244906,0.0799493962078595,0.199444263342656,0.163480694825708,0.141658689404213,0.0415116195869275 +bryophyte,bryophyte,south,,,Bryum.All,RapidDrain,100,0.156152654344576,0.0792635917631987,0.214475129418634,0.179839142499951,0.152421242722151,0.0500785737702547 +bryophyte,bryophyte,south,,,Bryum.All,Blowout,100,0.161001901703095,0.0852945424711149,0.226844756459417,0.18962303788414,0.158975501752427,0.0520618486472068 +bryophyte,bryophyte,south,,,Bryum.All,ThinBreak,100,0.117206500645836,0.0549168820269533,0.164065039217691,0.13142432263142,0.112033858300183,0.0372942022650665 +bryophyte,bryophyte,south,,,Bryum.All,Other,100,0.168419583113504,0.0822891630796571,0.267690205095818,0.192944265564736,0.175903710690002,0.0732996173307429 +bryophyte,bryophyte,south,,,Bryum.All,EnSeismic,100,0.285706828173089,0.131788075956036,0.475643293905932,0.334606425412252,0.301029077438524,0.136714788754343 +bryophyte,bryophyte,south,,,Bryum.All,EnSoftLin,100,0.295070145451912,0.128681836177832,0.470512478965884,0.329548544110659,0.301385057431252,0.139010399212797 +bryophyte,bryophyte,south,,,Bryum.All,TrSoftLin,100,0.332623290739286,0.161315385932921,0.514045175894535,0.383815980210159,0.340431234774784,0.143962534773796 +bryophyte,bryophyte,south,,,Bryum.All,HardLin,100,0.126951180038369,0.0665898325258077,0.192318873233161,0.1468328366873,0.127875436460889,0.0488916670891841 +bryophyte,bryophyte,south,,,Bryum.All,UrbInd,100,0.137138331130774,0.0783599882694526,0.20437591815214,0.15376441179003,0.14023936922447,0.0500491541506755 +bryophyte,bryophyte,south,,,Bryum.All,Wellsites,100,0.127110331449835,0.0621526964335989,0.176671006820092,0.140420183947776,0.12484641130979,0.0446353088320709 +bryophyte,bryophyte,south,,,Bryum.All,Crop,100,0.0880377684674123,0.0484990657151459,0.118132559523748,0.100381454106891,0.0859214348623467,0.0262193920264312 +bryophyte,bryophyte,south,,,Bryum.All,TameP,100,0.145659245315642,0.0828266159758801,0.193424837315819,0.164423435504234,0.140306445103777,0.043158660208166 +bryophyte,bryophyte,south,,,Bryum.All,RoughP,100,0.117156179814225,0.0649364387082694,0.157765036978439,0.13419258459678,0.113835466088647,0.0364671040315308 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Loamy,100,0.0665731461792143,0.0540496317550608,0.0830043023894639,0.0641849871927666,0.0675293443188264,0.010637438581989 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,SandyLoam,100,0.0784164244889771,0.0636932989496036,0.095901336217106,0.0742797240604397,0.0788210651112012,0.0123855618080076 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,ClaySub,100,0.0631006397418991,0.0509667176693332,0.0777159093182754,0.0592505109132571,0.0633911293804634,0.0102004252638268 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,RapidDrain,100,0.108925194046848,0.091142468530964,0.129622059810718,0.102551453445416,0.110783199088154,0.0164313920268292 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Blowout,100,0.115243289302347,0.0959428121490522,0.137580224447741,0.108577749315386,0.116029396856131,0.016605060303582 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,ThinBreak,100,0.0947103558371446,0.0794738011574603,0.110040000382044,0.0863196169586629,0.0950425625636708,0.0139990586258325 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Other,100,0.035389294721327,0.0157459332461416,0.0596745181248091,0.0345770287640794,0.0369871209429951,0.017357652208455 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSeismic,100,0.170746095200816,0.0901386428845377,0.284853366883734,0.16811461642476,0.183652635876616,0.0826587237918166 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSoftLin,100,0.16825790409875,0.085026895970976,0.287071792770146,0.169876045775971,0.182255228111873,0.0820683845857985 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,TrSoftLin,100,0.168790029868954,0.0763118995887514,0.275942013821538,0.160797502761418,0.176779705761704,0.0841158946231169 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,HardLin,100,0.0342998488787013,0.0255919496980683,0.0452510275990674,0.0318703430228878,0.0348351075159276,0.00759011247359115 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,UrbInd,100,0.0380279612309679,0.0260064250879738,0.0515041762519442,0.0356740467063795,0.0385865938791403,0.00997539830163396 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Wellsites,100,0.0429581991171401,0.0290665033937687,0.0612161134838477,0.0401699600814057,0.0439050478383005,0.012025268565163 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Crop,100,0.0259665936283444,0.0218879107113288,0.0308115194799179,0.0251044943216744,0.0262684288549131,0.00348408693150796 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,TameP,100,0.0578789523678902,0.0474051617941161,0.069435057999444,0.054988635814872,0.0580510288024451,0.00922258154449689 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,RoughP,100,0.056911309726954,0.0457601560670081,0.0710076627081057,0.0547537316462016,0.0576402504045931,0.00946121555271987 +lichen,lichen,north,,,Cladonia.chlorophaea,WhiteSpruce,100,0.297223194075414,0.256799019765351,0.333985831921151,0.299712823406177,0.296680657690402,0.0304659963952774 +lichen,lichen,north,,,Cladonia.chlorophaea,Pine,100,0.209099803645892,0.178646559987328,0.244808782504172,0.213983673760142,0.21093387162517,0.025044950449522 +lichen,lichen,north,,,Cladonia.chlorophaea,Deciduous,100,0.239574582741566,0.205682953284015,0.27225517502622,0.242873835985486,0.239965164134079,0.0263968954390752 +lichen,lichen,north,,,Cladonia.chlorophaea,Mixedwood,100,0.233270857716445,0.20045186961754,0.263999515975152,0.236140666947542,0.232493450350555,0.0257934907402311 +lichen,lichen,north,,,Cladonia.chlorophaea,BlackSpruce,100,0.219899421748204,0.184087003897275,0.257969283574183,0.227843083435444,0.222407625903415,0.0267699166652746 +lichen,lichen,north,,,Cladonia.chlorophaea,TreedFen,100,0.21851884685476,0.187713596248604,0.256985861852616,0.224783844707001,0.218925375916559,0.0260797270664674 +lichen,lichen,north,,,Cladonia.chlorophaea,TreedSwamp,100,0.246438034605367,0.20894302869697,0.288316823062349,0.252640022245541,0.247902541757749,0.0320024551771764 +lichen,lichen,north,,,Cladonia.chlorophaea,GraminoidFen,100,0.195908927938869,0.166869630574438,0.229947695630369,0.202508662292495,0.198080721138375,0.0240126056188502 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyFen,100,0.193252251018955,0.16436044232473,0.224084256465606,0.199216086052812,0.19476073516052,0.0235810980948602 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyBog,100,0.214846617996105,0.179407535286755,0.252018100216687,0.22188456568578,0.217067837644732,0.025945381662917 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbySwamp,100,0.211748544309402,0.174690844395726,0.245521084713665,0.214356168657179,0.211522250991211,0.0296302671207598 +lichen,lichen,north,,,Cladonia.chlorophaea,Marsh,100,0.172044093475013,0.142677323209338,0.201980822113392,0.175479744974187,0.172782680084728,0.0224964355834992 +lichen,lichen,north,,,Cladonia.chlorophaea,Shrub,100,0.120746681044114,0.0890563436971334,0.154935466539356,0.12074279741616,0.120470882415479,0.024105738621553 +lichen,lichen,north,,,Cladonia.chlorophaea,Grass,100,0.119166092751691,0.0909437132857532,0.149237752639642,0.119014260443607,0.118792610177536,0.0228060970550471 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruceR,100,0.176896582895857,0.150144887277901,0.216116994300915,0.18615405031743,0.179031593525308,0.024849011385922 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce1,100,0.191491540722816,0.162413374262626,0.236307611310575,0.20367100535893,0.195303202933605,0.0272956734723648 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce2,100,0.214909618698884,0.181038798653452,0.261651627939158,0.225668903881609,0.216797761235087,0.0286833134420421 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce3,100,0.214909618698884,0.181038798653452,0.261651627939158,0.225668903881609,0.216797761235087,0.0286833134420421 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce4,100,0.214909618698884,0.181038798653452,0.261651627939158,0.225668903881609,0.216797761235087,0.0286833134420421 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPineR,100,0.169330739417427,0.142142297878859,0.204667600890611,0.177981748325327,0.171597036691093,0.0232642802999795 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine1,100,0.204757931326164,0.171713328837569,0.246593379796201,0.215966217533035,0.206253525808234,0.0284789245212213 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine2,100,0.209095190334374,0.175878718156813,0.249631823499092,0.219134448870029,0.209525444675339,0.028436033159926 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine3,100,0.209095190334374,0.175878718156813,0.249631823499092,0.219134448870029,0.209525444675339,0.028436033159926 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine4,100,0.209095190334374,0.175878718156813,0.249631823499092,0.219134448870029,0.209525444675339,0.028436033159926 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduousR,100,0.177045051372606,0.151731937358952,0.213800872370871,0.185594844139235,0.179253982612955,0.0238607383251756 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous1,100,0.177096799646804,0.152703319121462,0.211315539675614,0.18593824743331,0.179775887046069,0.0229479553231891 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous2,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous3,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous4,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwoodR,100,0.177045051372606,0.151731937358952,0.213800872370871,0.185594844139235,0.179253982612955,0.0238607383251756 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood1,100,0.177096799646804,0.152703319121462,0.211315539675614,0.18593824743331,0.179775887046069,0.0229479553231891 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood2,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood3,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood4,100,0.201011051232229,0.170843222545165,0.236124374907298,0.20739871277065,0.201909109837473,0.0248389346141229 +lichen,lichen,north,,,Cladonia.chlorophaea,EnSeismic,100,0.068260721918929,0.0490037338913578,0.0909130791030983,0.0738978700051816,0.069053363513603,0.016951922830778 +lichen,lichen,north,,,Cladonia.chlorophaea,EnSoftLin,100,0.0592794323223757,0.0392063913449349,0.0775542535187628,0.0624980816232269,0.0597711844720497,0.0148954442726016 +lichen,lichen,north,,,Cladonia.chlorophaea,TrSoftLin,100,0.0653248489646429,0.0441720333943167,0.0831126316707758,0.0691216097124846,0.0653570229144214,0.0168272334077135 +lichen,lichen,north,,,Cladonia.chlorophaea,HardLin,100,0.0173071734937919,0.0138492426907642,0.0210785049461038,0.0172490121407761,0.0174049748048669,0.00273995558590796 +lichen,lichen,north,,,Cladonia.chlorophaea,UrbInd,100,0.0284490781398626,0.0218313353528594,0.0363863039333593,0.0293523293874362,0.0290658143760222,0.00657579033786307 +lichen,lichen,north,,,Cladonia.chlorophaea,Wellsites,100,0.0302516683739081,0.0218389472226189,0.038856569554282,0.0309948356921504,0.0308154005938539,0.00723476047784646 +lichen,lichen,north,,,Cladonia.chlorophaea,Crop,100,0.00999213609887376,0.0083504775690238,0.0123772842620464,0.00981647353265912,0.010154425809091,0.00144023169358702 +lichen,lichen,north,,,Cladonia.chlorophaea,TameP,100,0.0278584556848323,0.0207831983458442,0.0345026335875475,0.0276152084684389,0.0277340378465063,0.00538783724915475 +lichen,lichen,north,,,Cladonia.chlorophaea,RoughP,100,0.0246305116762622,0.0192907977697339,0.03280985786204,0.0254030986816399,0.0254455990819837,0.00561922974250667 +lichen,lichen,north,,,Physcia.adscendens,WhiteSpruce,100,0.0638648018855021,0.0557662973771377,0.0731302056205809,0.0640273150290537,0.0641993238865815,0.00750355188036341 +lichen,lichen,north,,,Physcia.adscendens,Pine,100,0.0463063731269453,0.0396656528435884,0.0523367231301627,0.0463066694973039,0.0464199487641803,0.00517469500366006 +lichen,lichen,north,,,Physcia.adscendens,Deciduous,100,0.172061724376017,0.144380294593452,0.194818566750278,0.171848485649294,0.171422639883003,0.0174219914541755 +lichen,lichen,north,,,Physcia.adscendens,Mixedwood,100,0.102895225770967,0.0868395089168292,0.121803229889261,0.103902979074589,0.104085468522643,0.0121305774399095 +lichen,lichen,north,,,Physcia.adscendens,BlackSpruce,100,0.0113179447295968,0.00887542315166759,0.0135342994207693,0.0111517688016057,0.0113641754114679,0.00180298378661495 +lichen,lichen,north,,,Physcia.adscendens,TreedFen,100,0.0130942905725219,0.0105073411552257,0.015165314412009,0.0127565152125194,0.0130870265791789,0.00198766483082882 +lichen,lichen,north,,,Physcia.adscendens,TreedSwamp,100,0.0681224897526755,0.0565002896746561,0.0809606866797563,0.0684768936890089,0.0682366202471938,0.0101577073545409 +lichen,lichen,north,,,Physcia.adscendens,GraminoidFen,100,0.0145648442821959,0.0116871133896595,0.0173492020463288,0.0143523346004894,0.0148241174665008,0.00234633354336228 +lichen,lichen,north,,,Physcia.adscendens,ShrubbyFen,100,0.0135936678742502,0.0110237121589747,0.0160146008108157,0.0134564657796432,0.013822035389038,0.00215034399574656 +lichen,lichen,north,,,Physcia.adscendens,ShrubbyBog,100,0.0121525787659654,0.00950795094011518,0.0143653222164254,0.0119692218653384,0.012219667563311,0.00188798726228172 +lichen,lichen,north,,,Physcia.adscendens,ShrubbySwamp,100,0.0640375247280888,0.0529787356365547,0.0784486940661993,0.0642372109431116,0.0642788941048957,0.00945325245141641 +lichen,lichen,north,,,Physcia.adscendens,Marsh,100,0.0410537792121147,0.0333487235262469,0.0526618078538927,0.0421183317862372,0.0418606467267573,0.0067914174385349 +lichen,lichen,north,,,Physcia.adscendens,Shrub,100,0.159007169056808,0.122733676662571,0.194380807854871,0.159263060245612,0.158403526180099,0.0279534060204698 +lichen,lichen,north,,,Physcia.adscendens,Grass,100,0.165458656798136,0.131168861671294,0.208003398682123,0.165761675145329,0.167185593752982,0.0312833980800269 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruceR,100,0.0519818167862785,0.0420542694653396,0.0633266367620693,0.0524933497432348,0.0526924322884459,0.00819582298499806 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce1,100,0.0666023095164884,0.0538352682667769,0.0801819701985156,0.0676142549226719,0.0671498361875249,0.0101083376605855 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce2,100,0.0746147680326323,0.0608923754250968,0.0891598692529928,0.075962081883682,0.0750067114704268,0.0111450676286065 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce3,100,0.0746147680326323,0.0608923754250968,0.0891598692529928,0.075962081883682,0.0750067114704268,0.0111450676286065 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce4,100,0.0746147680326323,0.0608923754250968,0.0891598692529928,0.075962081883682,0.0750067114704268,0.0111450676286065 +lichen,lichen,north,,,Physcia.adscendens,CCPineR,100,0.0528778183465056,0.0428634556232134,0.0643584239867792,0.0530687182992354,0.0533543662412555,0.00821837965410161 +lichen,lichen,north,,,Physcia.adscendens,CCPine1,100,0.0538062071702612,0.0438472081361071,0.0666587780453015,0.054822170261719,0.0547148423093629,0.00845254387305861 +lichen,lichen,north,,,Physcia.adscendens,CCPine2,100,0.0563915835738143,0.0463244522236611,0.0699491682718799,0.0575642554040823,0.0572993937130915,0.00883482932134271 +lichen,lichen,north,,,Physcia.adscendens,CCPine3,100,0.0563915835738143,0.0463244522236611,0.0699491682718799,0.0575642554040823,0.0572993937130915,0.00883482932134271 +lichen,lichen,north,,,Physcia.adscendens,CCPine4,100,0.0563915835738143,0.0463244522236611,0.0699491682718799,0.0575642554040823,0.0572993937130915,0.00883482932134271 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduousR,100,0.0811263137382466,0.0673395384989791,0.0996432169905119,0.0827606661851487,0.081915871035783,0.0124557092612052 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous1,100,0.0992246229409317,0.0813425488180816,0.117944989857838,0.100618826509217,0.0997281808775687,0.01439584209104 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous2,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous3,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous4,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwoodR,100,0.0811263137382466,0.0673395384989791,0.0996432169905119,0.0827606661851487,0.081915871035783,0.0124557092612052 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood1,100,0.0992246229409317,0.0813425488180816,0.117944989857838,0.100618826509217,0.0997281808775687,0.01439584209104 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood2,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood3,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood4,100,0.0825783410079587,0.0683639396203367,0.100014018646427,0.084212382915902,0.0834153613353392,0.0127727265941385 +lichen,lichen,north,,,Physcia.adscendens,EnSeismic,100,0.0247720933511402,0.0180696535269707,0.0350426358415283,0.0258176949589414,0.0261663356183436,0.0069769542488649 +lichen,lichen,north,,,Physcia.adscendens,EnSoftLin,100,0.0269990587453396,0.0192422041611614,0.0373054604227825,0.0273345543422601,0.0274710137863163,0.00706602329574508 +lichen,lichen,north,,,Physcia.adscendens,TrSoftLin,100,0.0240629040821202,0.0179500162051208,0.0338850103025409,0.0242538337610053,0.0248676611153736,0.00625983853995381 +lichen,lichen,north,,,Physcia.adscendens,HardLin,100,0.0160823700032184,0.0125841775306315,0.0216364780302574,0.0164220788059039,0.0165089069990094,0.0033267193192414 +lichen,lichen,north,,,Physcia.adscendens,UrbInd,100,0.02669880615078,0.0205294994754198,0.0341376127616443,0.0269462495385606,0.0270719792801592,0.00581497652552271 +lichen,lichen,north,,,Physcia.adscendens,Wellsites,100,0.0187224253025368,0.0147594176213366,0.0238495035687749,0.0189042713169681,0.0191526814173151,0.00401531487513757 +lichen,lichen,north,,,Physcia.adscendens,Crop,100,0.00621167817092048,0.00477222599649511,0.0080602084458,0.0061978772206181,0.00629736067698438,0.00128079920711455 +lichen,lichen,north,,,Physcia.adscendens,TameP,100,0.0210873687713408,0.0163962886653569,0.0270516862660557,0.0217469866099191,0.0216495368601797,0.00384240281569846 +lichen,lichen,north,,,Physcia.adscendens,RoughP,100,0.0384802172001532,0.0302574959935426,0.048105189361862,0.039996203554655,0.03931301117701,0.007735086862159 +lichen,lichen,south,,,Cladonia.chlorophaea,Loamy,100,0.118760424872616,0.101405575596529,0.143355777615454,0.118687300046851,0.121276425017576,0.0164657398985272 +lichen,lichen,south,,,Cladonia.chlorophaea,SandyLoam,100,0.122595772153947,0.10532585234502,0.149322404662719,0.122725360583689,0.125310551292029,0.0173692338970676 +lichen,lichen,south,,,Cladonia.chlorophaea,ClaySub,100,0.116805387552155,0.1025085380683,0.138887194628692,0.11648008810727,0.119720120311801,0.015302603582975 +lichen,lichen,south,,,Cladonia.chlorophaea,RapidDrain,100,0.133311226322324,0.115932030078736,0.158542557565749,0.134401942825707,0.136619372956896,0.0197438882102956 +lichen,lichen,south,,,Cladonia.chlorophaea,Blowout,100,0.142042876516344,0.119507127722255,0.172932947472501,0.143701037126792,0.145738616502655,0.0225166395587508 +lichen,lichen,south,,,Cladonia.chlorophaea,ThinBreak,100,0.13766270972952,0.114350969621918,0.167516655522634,0.137503969297793,0.140677239225245,0.0212352794418216 +lichen,lichen,south,,,Cladonia.chlorophaea,Other,100,0.0108562521904177,1.00062948752762e-05,0.0351844002426785,0.011592343091593,0.013043222061931,0.0139961047507516 +lichen,lichen,south,,,Cladonia.chlorophaea,EnSeismic,100,0.0741169302991828,0.0120359382144399,0.210660471709653,0.0746380066039094,0.100204527490337,0.098072645783947 +lichen,lichen,south,,,Cladonia.chlorophaea,EnSoftLin,100,0.0589905313374112,0.00738731888221285,0.201796902788628,0.0593528864488744,0.0846947036551702,0.0827099377051934 +lichen,lichen,south,,,Cladonia.chlorophaea,TrSoftLin,100,0.093067131264668,0.0204224388858975,0.272212476112873,0.104765725082673,0.129486635879564,0.117087006185138 +lichen,lichen,south,,,Cladonia.chlorophaea,HardLin,100,0.0227860028946222,0.018496977422916,0.0282007127258966,0.0224141883326856,0.0228902186665491,0.00394290011708561 +lichen,lichen,south,,,Cladonia.chlorophaea,UrbInd,100,0.0289753908974748,0.0203419760515701,0.0416360285523085,0.0287494220624193,0.0305195214283762,0.00867087363774642 +lichen,lichen,south,,,Cladonia.chlorophaea,Wellsites,100,0.0370128753703369,0.0228876363353741,0.0582870656555651,0.0355928387293783,0.0386011160630103,0.0144565424483663 +lichen,lichen,south,,,Cladonia.chlorophaea,Crop,100,0.0112677524812685,0.00895653905697318,0.014175551514401,0.0108908943675099,0.0113577222639511,0.00190227925792113 +lichen,lichen,south,,,Cladonia.chlorophaea,TameP,100,0.0528386134673725,0.0424235843313021,0.0656671254655528,0.0527988783208814,0.0539750158803284,0.00961979420469923 +lichen,lichen,south,,,Cladonia.chlorophaea,RoughP,100,0.0704478466501114,0.0534068603371204,0.087053206773969,0.0704617752927988,0.0709294237198196,0.0127411030090668 +lichen,lichen,south,,,Physcia.adscendens,Loamy,100,0.168042322563382,0.149972403854276,0.187621968417659,0.169700398944145,0.169083684058597,0.0159711291722936 +lichen,lichen,south,,,Physcia.adscendens,SandyLoam,100,0.178816490486835,0.157664867438578,0.206754009943739,0.181481384725004,0.180964310588072,0.0196325051043924 +lichen,lichen,south,,,Physcia.adscendens,ClaySub,100,0.15948040615619,0.144412217626566,0.183514467512427,0.162178734164762,0.162369771056228,0.0152478550128557 +lichen,lichen,south,,,Physcia.adscendens,RapidDrain,100,0.133174082005861,0.108147725791054,0.158683005362416,0.138113163461797,0.135537794747991,0.0221824133534269 +lichen,lichen,south,,,Physcia.adscendens,Blowout,100,0.0783399666989877,0.0621073160124499,0.0932973691388306,0.0791009289771177,0.0787039239133848,0.0143735448792592 +lichen,lichen,south,,,Physcia.adscendens,ThinBreak,100,0.101634174074704,0.0797195107494127,0.122703725811209,0.103023942244417,0.101045794551797,0.0176433076368201 +lichen,lichen,south,,,Physcia.adscendens,Other,100,0.135603856999727,0.0759242964501409,0.194916661531425,0.127814796703126,0.134073537750041,0.0508981883415281 +lichen,lichen,south,,,Physcia.adscendens,EnSeismic,100,0.126628050717089,0.055339073427792,0.267309238011425,0.134144710345317,0.150880268845584,0.101588741313365 +lichen,lichen,south,,,Physcia.adscendens,EnSoftLin,100,0.0829497370853008,0.0330772808709875,0.203327069279373,0.0868856909303751,0.104049206597755,0.0768145833395121 +lichen,lichen,south,,,Physcia.adscendens,TrSoftLin,100,0.140849571647582,0.0632571902916997,0.358152172382641,0.157835534383738,0.181999299103165,0.123713892014494 +lichen,lichen,south,,,Physcia.adscendens,HardLin,100,0.0164080297586382,0.0126435739299206,0.0202810316636234,0.0165350535429243,0.0166072076573647,0.00326781660771976 +lichen,lichen,south,,,Physcia.adscendens,UrbInd,100,0.0426026758322404,0.0309643895865579,0.0596345414259548,0.0431506202004028,0.0440602018498762,0.0115144047213078 +lichen,lichen,south,,,Physcia.adscendens,Wellsites,100,0.041450461300727,0.0289326237699527,0.0575446718895364,0.0413073764753538,0.0418261511462819,0.0110571328037954 +lichen,lichen,south,,,Physcia.adscendens,Crop,100,0.00916378733877362,0.00751086734379391,0.0107940857677616,0.00923975055880215,0.0091924707651885,0.00153574702124211 +lichen,lichen,south,,,Physcia.adscendens,TameP,100,0.0265119152472038,0.0202324904660954,0.0303829572907274,0.026713869603247,0.0260971202538315,0.00452685074013171 +lichen,lichen,south,,,Physcia.adscendens,RoughP,100,0.0384136847737998,0.0304612756475431,0.0449729740444777,0.039320400519205,0.0381938851106205,0.00624657883043015 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Decid,100,0.0483594827063645,0.0414118481331626,0.0563982542519368,0.0487558878166635,0.0485336895616105,0.0068092864354131 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Mixedwood,100,0.0351561471368664,0.0242025397384364,0.0463572816733345,0.0339606541972421,0.0355995378172595,0.00894981356273383 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Pine,100,0.0256013795193124,0.01824239977447,0.0313975443070661,0.0258942184497686,0.0253239847649179,0.00500141300051215 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Spruce,100,0.0158309723048582,0.0102588646061362,0.0218278913443854,0.0155269078679997,0.0161450148400433,0.00428664625822814 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedBog,100,0.029434754078122,0.0249943179821213,0.0359303843195688,0.0299192022319042,0.0300046246220914,0.00447375399845672 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedFen,100,0.0291157898857012,0.023775298386277,0.0353418695585902,0.0299192022319042,0.0295256783465423,0.00461968212252635 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedSwamp,100,0.0312737750968453,0.0185619561651247,0.0439052060299924,0.0299192022319042,0.0308756010457884,0.0095324449415456 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GrassHerb,100,0.0785972684793487,0.0587194800671309,0.108200584386506,0.0701423452426464,0.0800041123333062,0.0207203837913138 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Shrub,100,0.0638763830262266,0.0432418463524077,0.0810865803379858,0.0701423452426464,0.063477882385419,0.0148042032995085 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GraminoidFen,100,0.0601441339822926,0.0304644977939886,0.0812721117490118,0.0320501190239091,0.0560416896335662,0.0208268772049053 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Marsh,100,0.0601441339822926,0.0304644977939886,0.0812721117490118,0.0320501190239091,0.0560416896335662,0.0208268772049053 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyBog,100,0.0189501510379441,0.00806039782961353,0.0341486287892669,0.0320501190239091,0.0206606382909829,0.0098600640304262 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyFen,100,0.0189501510379441,0.00806039782961353,0.0341486287892669,0.0320501190239091,0.0206606382909829,0.0098600640304262 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbySwamp,100,0.0259568256179573,0.0156535396414799,0.0346912354382728,0.0320501190239091,0.0257712580266269,0.00788133710983602 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecidR,100,0.0589128268649123,0.0328811565492362,0.0937139933204344,0.0664247062431653,0.0613991568761192,0.0266909524675824 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid1,100,0.101547292339766,0.0530167833013339,0.217810899949766,0.0664247062431653,0.124360210593978,0.0671243003813008 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid2,100,0.0516020670687248,0.0151952152365976,0.0833007528895771,0.0664247062431653,0.0483529287950538,0.0254242491196635 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid3,100,0.124673154645494,0.0530167833013339,0.163457117688787,0.0664247062431653,0.1108234847745,0.0450815627910776 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid4,100,0.124673154645494,0.0530167833013339,0.163457117688787,0.0664247062431653,0.1108234847745,0.0450815627910776 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwoodR,100,3.72855409894537e-07,5.47842003511913e-08,0.0833007528895771,0.0664247062431653,0.0316713892885261,0.0359620322643694 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood1,100,0.0646375446939071,0.035385035599797,0.126200797875627,0.0664247062431653,0.0730497283726891,0.0427794927811525 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood2,100,0.0697287476043638,0.0309758891666172,0.169160650963475,0.0664247062431653,0.0884099329763265,0.0629283756685299 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood3,100,0.124673154645494,0.0530167833013339,0.163457117688787,0.0664247062431653,0.1108234847745,0.0450815627910776 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood4,100,0.124673154645494,0.0530167833013339,0.163457117688787,0.0664247062431653,0.1108234847745,0.0450815627910776 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPineR,100,0.0484442595993501,0.0268995847238305,0.126785183996014,0.0418434478038768,0.0699726382745438,0.0455943713218502 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine1,100,0.0311079332735461,0.0157825531999667,0.0484169484849554,0.0418434478038768,0.0321502261803672,0.0147557755697887 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine2,100,0.124673154645494,0.0290689292212467,0.163457117688787,0.0418434478038768,0.0986304776454289,0.0573377553796652 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine3,100,0.124673154645494,0.0290689292212467,0.163457117688787,0.0418434478038768,0.0986304776454289,0.0573377553796652 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine4,100,0.124673154645494,0.0290689292212467,0.163457117688787,0.0418434478038768,0.0986304776454289,0.0573377553796652 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruceR,100,0.081353803296149,0.0286783678552215,0.251217184909871,0.0418434478038768,0.118495066582276,0.0999479881036481 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce1,100,0.0447267336414446,9.36619670623034e-08,0.11798015194896,0.0418434478038768,0.0600166873448887,0.0721591677501457 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce2,100,0.0341282849673548,0.0159969116763001,0.0684462472561841,0.0418434478038768,0.0388186316634564,0.0233437171584887 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce3,100,0.125435704711867,0.0290708823093577,0.163457117688787,0.0418434478038768,0.101910273358532,0.0552214662302606 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCSpruce4,100,0.125435704711867,0.0290708823093577,0.163457117688787,0.0418434478038768,0.101910273358532,0.0552214662302606 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,HardLin,100,0.134990802687838,0.0688384772973166,0.179271577228808,0.140140987080189,0.128733675612959,0.0416464065610382 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,EnSoftLin,100,0.118353918404146,0.0954236011149053,0.162724311460711,0.108633567141907,0.123770329636941,0.0290009369428649 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,EnSeismic,100,0.101524417191545,0.0557851312646505,0.128492659433118,0.108633567141907,0.0960208287352638,0.0276153535004726 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TrSoftLin,100,0.109556511052275,0.074868503218827,0.138196677657058,0.108633567141907,0.108683190638727,0.0262063538664031 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Urban,100,0.134990802687838,0.0688384772973166,0.179271577228808,0.140140987080189,0.128733675612959,0.0416464065610382 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Rural,100,0.134990802687838,0.0688384772973166,0.179271577228808,0.140140987080189,0.128733675612959,0.0416464065610382 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Industrial,100,0.134990802687838,0.0688384772973166,0.179271577228808,0.140140987080189,0.128733675612959,0.0416464065610382 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Well,100,0.123932314686558,0.0272975036658561,0.157271661675091,0.140140987080189,0.101655069287838,0.0517767730968891 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Crop,100,0.144356413835438,0.124028100048918,0.171958352945825,0.140140987080189,0.145015373881083,0.0203269226002348 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TameP,100,0.150075585048021,0.123690046738055,0.186290627573863,0.140140987080189,0.153250281462701,0.0315293417132034 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+mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,SandyLoam,100,0.765898474195991,0.625128237557598,0.89519023310151,0.714170375192759,0.75925104168454,0.109119980300251 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,ThinBreak,100,0.702729894924194,0.532784100477285,0.845582463576447,0.714170375192759,0.696498363080483,0.112209043947277 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Blowout,100,0.702729894924194,0.532784100477285,0.845582463576447,0.714170375192759,0.696498363080483,0.112209043947277 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Urban,100,0.775789255850362,0.636241543237387,0.8824519427391,0.757773549137013,0.758182230379237,0.11436905098169 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Rural,100,0.775789255850362,0.636241543237387,0.8824519427391,0.757773549137013,0.758182230379237,0.11436905098169 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Industrial,100,0.775789255850362,0.636241543237387,0.8824519427391,0.757773549137013,0.758182230379237,0.11436905098169 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Well,100,0.723172291301919,0.535354887502062,0.873697343957099,0.757773549137013,0.711240341537646,0.127789436959912 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Mine,100,0.775789255850362,0.636241543237387,0.8824519427391,0.757773549137013,0.758182230379237,0.11436905098169 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,EnSoftLin,100,0.656946705814415,0.471714470156675,0.856438129969767,0.628634628150965,0.649753443360378,0.158071932609515 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,EnSeismic,100,0.656946705814415,0.471714470156675,0.856438129969767,0.628634628150965,0.649753443360378,0.158071932609515 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,HardLin,100,0.775789255850362,0.636241543237387,0.8824519427391,0.757773549137013,0.758182230379237,0.11436905098169 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,TrSoftLin,100,0.629322984636201,0.467535885878004,0.797966928943662,0.628634628150965,0.630495467901194,0.127898159927544 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,Crop,100,0.763625172444686,0.625233314007204,0.873697343957099,0.757773549137013,0.748637157301014,0.0964348772482102 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,RoughP,100,0.757503251016383,0.560574525811163,0.873697343957099,0.757773549137013,0.737968673107066,0.105962302473259 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,TameP,100,0.761837237003966,0.650402585362162,0.873697343957099,0.757773549137013,0.753861584328303,0.0927946141177057 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,WetlandMargin,100,0.888816791069685,0.745819337087173,0.963175043297249,0.870880735779777,0.861580803343261,0.103911677681727 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,ClaySub,100,0.00901907292334418,0.00395896603109892,0.0224763592865055,0.0141945654676911,0.0111116719857896,0.00736053858000641 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Other,100,0.00901907292334418,0.00395896603109892,0.0224763592865055,0.0141945654676911,0.0111116719857896,0.00736053858000641 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,RapidDrain,100,0.0113976501352768,0.0043465212562151,0.0256046970444095,0.0141945654676911,0.0143241968881526,0.0105633476997002 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Loamy,100,0.00983864381384956,0.00427177362560075,0.023102750553041,0.0141945654676911,0.0121120043194343,0.00771436958661508 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+mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Industrial,100,7.75895576152824e-10,3.44432500305338e-10,2.78333509246948e-09,9.67698723675452e-10,0.000235799040000245,0.00120591748931771 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Well,100,7.87419219794934e-10,2.99392953216905e-10,2.57405477170408e-09,8.90552084803996e-10,0.00023579898080937,0.00120591750100836 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Mine,100,7.75895576152824e-10,3.44432500305338e-10,2.78333509246948e-09,9.67698723675452e-10,0.000235799040000245,0.00120591748931771 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,EnSoftLin,100,0.0248424631931178,0.00460836849545691,0.0921001582461561,0.0367985674989132,0.0407755679608486,0.05743250715751 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,EnSeismic,100,0.0248424631931178,0.00460836849545691,0.0921001582461561,0.0367985674989132,0.0407755679608486,0.05743250715751 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,HardLin,100,7.75895576152824e-10,3.44432500305338e-10,2.78333509246948e-09,9.67698723675452e-10,0.000235799040000245,0.00120591748931771 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,TrSoftLin,100,0.00249469387501362,0.000379040108724366,0.00760478473172621,0.00374705166332369,0.00327937656633436,0.0029084108249803 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,Crop,100,0.00404295592923784,0.0019251990644438,0.00822025781058035,0.00559204853976238,0.00486637506500823,0.0030617350571807 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,RoughP,100,0.00644153277046238,0.00252423910713441,0.0162105994287237,0.00988095151082199,0.00796460823501309,0.00629421417448711 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,TameP,100,0.00270840599523607,0.00110079046436486,0.00696658084994184,0.00325978967361389,0.00337440291115855,0.00230092417924499 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,WetlandMargin,100,1.86844798686809e-09,9.42942331037853e-10,4.67968633112177e-09,2.06303834717273e-09,2.71691235950851e-09,2.7090235036235e-09 +mite,mite,north,,,Ceratozetes.gracilis,WhiteSpruce,100,0.07938259004759,0.0719527394304755,0.0875845851932171,0.0783644708180673,0.0799208933542465,0.00624681141859307 +mite,mite,north,,,Ceratozetes.gracilis,Pine,100,0.0571490439101831,0.0530628627411147,0.0629520262365782,0.0561087495328157,0.0576497982383193,0.00368213926355443 +mite,mite,north,,,Ceratozetes.gracilis,Deciduous,100,0.121114071952757,0.110635619991547,0.13539009654291,0.120032888034155,0.122127477972057,0.00906642761340119 +mite,mite,north,,,Ceratozetes.gracilis,Mixedwood,100,0.0920645729781936,0.085277816475564,0.102830652018281,0.0922465109400969,0.0931124910680748,0.00723083472114519 +mite,mite,north,,,Ceratozetes.gracilis,BlackSpruce,100,0.0205596846759899,0.01774747849712,0.0246835796298818,0.0201312092719344,0.0207395222242242,0.00269942006168839 +mite,mite,north,,,Ceratozetes.gracilis,TreedFen,100,0.0262590836790149,0.022901303675808,0.0320739517908113,0.0260589020761079,0.0267137746414772,0.00355493829382522 +mite,mite,north,,,Ceratozetes.gracilis,TreedSwamp,100,0.0749604279425229,0.0634144291973861,0.0898203679528381,0.0749606880704819,0.0761649454233833,0.0106039339361351 +mite,mite,north,,,Ceratozetes.gracilis,GraminoidFen,100,0.0258008264010977,0.0226930616219225,0.0307682440305272,0.0256468478624544,0.0262707967017652,0.00335026774261756 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbyFen,100,0.0254487265060534,0.0223540452795499,0.0301094594591206,0.0254940252637942,0.0260607917697191,0.00327777143955078 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbyBog,100,0.0217699682682496,0.018693330296751,0.025697012464359,0.0212207018552364,0.0218479880504345,0.00277080951556781 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbySwamp,100,0.077888260617536,0.0672274879829727,0.0933591987007735,0.0787981143345215,0.0802416071466661,0.0105602209357424 +mite,mite,north,,,Ceratozetes.gracilis,Marsh,100,0.0560999396785352,0.0481162697910709,0.0683107080664086,0.0549398690582114,0.0573590597385013,0.00786488087781461 +mite,mite,north,,,Ceratozetes.gracilis,Shrub,100,0.0693261001545315,0.0527699322847994,0.0879397561586401,0.0690326282206128,0.0707242071858363,0.0142570617860765 +mite,mite,north,,,Ceratozetes.gracilis,Grass,100,0.0719434890897125,0.0532588234798988,0.0922512916642734,0.0717095541732357,0.0719712607181167,0.0150633512396085 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruceR,100,0.108372391070974,0.0939105497659915,0.122154889239541,0.104199864858387,0.107448463212037,0.0106942184205959 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce1,100,0.126418259313458,0.107584948778633,0.14165251782393,0.123393977309761,0.125545333171289,0.0125253700327604 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce2,100,0.123391309625664,0.107180188239376,0.140931502684704,0.121062001485335,0.123374522277479,0.0126543051434726 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce3,100,0.123391309625664,0.107180188239376,0.140931502684704,0.121062001485335,0.123374522277479,0.0126543051434726 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce4,100,0.123391309625664,0.107180188239376,0.140931502684704,0.121062001485335,0.123374522277479,0.0126543051434726 +mite,mite,north,,,Ceratozetes.gracilis,CCPineR,100,0.112736667313337,0.0979400027291584,0.12676396214384,0.108797637100679,0.111692863808291,0.0109124538352999 +mite,mite,north,,,Ceratozetes.gracilis,CCPine1,100,0.111461544311891,0.0975457924857779,0.125925207012302,0.108122243613567,0.111206498168139,0.0109657755583875 +mite,mite,north,,,Ceratozetes.gracilis,CCPine2,100,0.111179104798711,0.0975624150723887,0.125974488745933,0.107706392899407,0.110865115464889,0.0109545674282994 +mite,mite,north,,,Ceratozetes.gracilis,CCPine3,100,0.111179104798711,0.0975624150723887,0.125974488745933,0.107706392899407,0.110865115464889,0.0109545674282994 +mite,mite,north,,,Ceratozetes.gracilis,CCPine4,100,0.111179104798711,0.0975624150723887,0.125974488745933,0.107706392899407,0.110865115464889,0.0109545674282994 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduousR,100,0.139566560579538,0.121641522791004,0.154666484830067,0.134759239890019,0.139023356548756,0.0138695921747237 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous1,100,0.164039113098095,0.140659210007625,0.184163124936701,0.159272382892999,0.164023916325755,0.0170446168368175 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous2,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous3,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous4,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwoodR,100,0.139566560579538,0.121641522791004,0.154666484830067,0.134759239890019,0.139023356548756,0.0138695921747237 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood1,100,0.164039113098095,0.140659210007625,0.184163124936701,0.159272382892999,0.164023916325755,0.0170446168368175 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood2,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood3,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood4,100,0.133209432108129,0.116294494399973,0.149296893810894,0.12851467723662,0.132549178989436,0.0137844675517765 +mite,mite,north,,,Ceratozetes.gracilis,EnSeismic,100,0.0810272367163969,0.0626144337347414,0.112554076166279,0.0802806120357541,0.0843640794591155,0.0207422391596591 +mite,mite,north,,,Ceratozetes.gracilis,EnSoftLin,100,0.0785426684555874,0.0612849115073368,0.11061412559478,0.0797199425033713,0.0821778717987157,0.020137419776097 +mite,mite,north,,,Ceratozetes.gracilis,TrSoftLin,100,0.0766983750537822,0.0575016479816002,0.103974343610869,0.0742439958268106,0.0780452088736354,0.0186458418075786 +mite,mite,north,,,Ceratozetes.gracilis,HardLin,100,0.0262737119302125,0.0219643664702789,0.0328250021435475,0.0268643924591711,0.0272625876576968,0.00456096919080605 +mite,mite,north,,,Ceratozetes.gracilis,UrbInd,100,0.0443904695284065,0.0336078935648463,0.0570352114850683,0.0442950175704556,0.0447934435750473,0.00936051807714834 +mite,mite,north,,,Ceratozetes.gracilis,Wellsites,100,0.0325249656344083,0.0268378330598262,0.039585094087309,0.0328506872802035,0.0330996829389395,0.0055016876388775 +mite,mite,north,,,Ceratozetes.gracilis,Crop,100,0.0213574324998319,0.0176548470273419,0.0266321364281287,0.0215366173604663,0.0218389192921518,0.00363217928604204 +mite,mite,north,,,Ceratozetes.gracilis,TameP,100,0.0305231476958567,0.0243616185846367,0.0361494027316814,0.0304807640689111,0.0304629458166865,0.00454614423963791 +mite,mite,north,,,Ceratozetes.gracilis,RoughP,100,0.0517051161204428,0.0408223682381811,0.0667004008409649,0.0516284245607066,0.0529447266778075,0.0102209267710162 +mite,mite,north,,,Trhypochthonius.tectorum,WhiteSpruce,100,0.0510006115509917,0.0444169898712104,0.0569229271524928,0.0510483651362441,0.0506739154508793,0.00445688413375979 +mite,mite,north,,,Trhypochthonius.tectorum,Pine,100,0.0577113116146177,0.0520831064268319,0.0670810102094354,0.0594751004150133,0.0587026549321239,0.00562915730164634 +mite,mite,north,,,Trhypochthonius.tectorum,Deciduous,100,0.0505408687900254,0.0443630647026802,0.0570702363227535,0.0514776313631932,0.0506336354837973,0.00458792381035369 +mite,mite,north,,,Trhypochthonius.tectorum,Mixedwood,100,0.0515636312384204,0.0455412512442322,0.0574497729248571,0.0518923527010723,0.0517798324985051,0.00505273284432146 +mite,mite,north,,,Trhypochthonius.tectorum,BlackSpruce,100,0.0472870708082623,0.041298809486306,0.0550078765993573,0.0479250894638649,0.0476752142179578,0.0054250784268956 +mite,mite,north,,,Trhypochthonius.tectorum,TreedFen,100,0.0403765290973172,0.0351892606972976,0.0470883006717696,0.0408841194527538,0.0407231925186715,0.00433713783369807 +mite,mite,north,,,Trhypochthonius.tectorum,TreedSwamp,100,0.0329811819046789,0.0276885614829463,0.0393056546598911,0.033440734757267,0.0332427776554696,0.00452606619284316 +mite,mite,north,,,Trhypochthonius.tectorum,GraminoidFen,100,0.0401533382325904,0.0347794192392877,0.0465765041371538,0.0407667314478653,0.040578059211378,0.00437539498663048 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyFen,100,0.0399680062170593,0.0353002983443287,0.0468532085727764,0.040625299041178,0.0404837549848476,0.00430369804024975 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyBog,100,0.0465285695045314,0.0405631674946304,0.0535938162152349,0.0468903066670746,0.046641395377786,0.0051354068350446 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbySwamp,100,0.0285532696069059,0.0250284053612327,0.0325754403236589,0.0286964469315836,0.0287356757160903,0.00313266476669192 +mite,mite,north,,,Trhypochthonius.tectorum,Marsh,100,0.0343293489830874,0.0298174555986555,0.0390898705423903,0.0341610990357597,0.0346394031953998,0.00405625067844123 +mite,mite,north,,,Trhypochthonius.tectorum,Shrub,100,0.0269801984044545,0.0184703295148817,0.0361026878788468,0.0282145223452054,0.0274756802816401,0.00746156356265599 +mite,mite,north,,,Trhypochthonius.tectorum,Grass,100,0.0385312342617813,0.0241343272433626,0.0547717035372114,0.0390477719581986,0.0383979248221989,0.0115027935850492 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruceR,100,0.0459015275751805,0.0359476274113591,0.0573079970500523,0.0467252252362432,0.0464214938645434,0.00796453339488423 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce1,100,0.0423432753542211,0.0326963030226976,0.0516480325222987,0.0423468795516491,0.0419296828388556,0.006963453245382 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce2,100,0.0427917625035456,0.0339309966148455,0.0521645741665505,0.043016752346317,0.0427901739704321,0.00688939201509211 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce3,100,0.0427917625035456,0.0339309966148455,0.0521645741665505,0.043016752346317,0.0427901739704321,0.00688939201509211 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce4,100,0.0427917625035456,0.0339309966148455,0.0521645741665505,0.043016752346317,0.0427901739704321,0.00688939201509211 +mite,mite,north,,,Trhypochthonius.tectorum,CCPineR,100,0.0496987696486271,0.0378192664564276,0.0632383580476402,0.0518112255096306,0.0505954283607586,0.00923496577119304 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine1,100,0.0444994018277503,0.0341341129228821,0.0562209564978858,0.0447974822354535,0.0443266808323149,0.00790077393757443 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine2,100,0.0446390323172036,0.0345185104196349,0.0561198342500703,0.0449930704020798,0.0445381811845565,0.00782794418844351 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine3,100,0.0446390323172036,0.0345185104196349,0.0561198342500703,0.0449930704020798,0.0445381811845565,0.00782794418844351 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine4,100,0.0446390323172036,0.0345185104196349,0.0561198342500703,0.0449930704020798,0.0445381811845565,0.00782794418844351 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduousR,100,0.0448616344913537,0.0334411060458035,0.0561171676893809,0.0451521693584135,0.0451256467790318,0.00850304308525189 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous1,100,0.0370965415526003,0.0294970997952037,0.044957402988125,0.0368681428962799,0.0367952293958393,0.00616783622826616 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous2,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous3,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous4,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwoodR,100,0.0448616344913537,0.0334411060458035,0.0561171676893809,0.0451521693584135,0.0451256467790318,0.00850304308525189 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood1,100,0.0370965415526003,0.0294970997952037,0.044957402988125,0.0368681428962799,0.0367952293958393,0.00616783622826616 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood2,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood3,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood4,100,0.0401041558340686,0.0318241237636807,0.0476003426153311,0.039821927948205,0.0397203075906696,0.00643959682321921 +mite,mite,north,,,Trhypochthonius.tectorum,EnSeismic,100,0.0547524116254089,0.0373698666655023,0.0764347463931894,0.0544387764396551,0.0561347423647788,0.017156387270908 +mite,mite,north,,,Trhypochthonius.tectorum,EnSoftLin,100,0.0403436565913583,0.0235211577804601,0.0597719136375779,0.0402530079505476,0.0409216712974844,0.0141392263211451 +mite,mite,north,,,Trhypochthonius.tectorum,TrSoftLin,100,0.0374102517516621,0.0243112315672145,0.0530933339800134,0.0363880404889003,0.0378865081987454,0.0127716889395708 +mite,mite,north,,,Trhypochthonius.tectorum,HardLin,100,0.0243581550399168,0.0195631171061831,0.0313331259421888,0.0243958652679851,0.0249015310217259,0.00509876663318174 +mite,mite,north,,,Trhypochthonius.tectorum,UrbInd,100,0.01955548375457,0.0151646980787135,0.0237276464367136,0.0191105703106928,0.0198224754969184,0.00357155757649296 +mite,mite,north,,,Trhypochthonius.tectorum,Wellsites,100,0.0233410566658626,0.0182411698145288,0.0306329839818336,0.023351034935016,0.0239872888938525,0.00531200894900587 +mite,mite,north,,,Trhypochthonius.tectorum,Crop,100,0.0154435594713893,0.012609896196333,0.0186572295194573,0.0152304430995811,0.0155580656601119,0.00236414539335821 +mite,mite,north,,,Trhypochthonius.tectorum,TameP,100,0.025235820172948,0.0197504426858474,0.0309671289912076,0.024941743213498,0.0252556348249364,0.00432639336605132 +mite,mite,north,,,Trhypochthonius.tectorum,RoughP,100,0.0365817748035025,0.026091366411958,0.0483707053449294,0.0375661766298358,0.0368569421383342,0.00860053907567022 +mite,mite,south,,,Ceratozetes.gracilis,Loamy,100,0.0216536390168043,0.0170881072973379,0.025868684547372,0.0218423245463604,0.0215170262031307,0.00366897321327935 +mite,mite,south,,,Ceratozetes.gracilis,SandyLoam,100,0.0186629889337483,0.0149181271589302,0.0230940885572486,0.0185871549772747,0.0187901635895962,0.00305922807861577 +mite,mite,south,,,Ceratozetes.gracilis,ClaySub,100,0.0195341420669798,0.0155324825720062,0.0228917865094462,0.0190796631779778,0.0192914945810115,0.00324637462174499 +mite,mite,south,,,Ceratozetes.gracilis,RapidDrain,100,0.0114890481126546,0.00803956709951847,0.0158789114841747,0.0110451655878437,0.0116013557283835,0.00300760735945735 +mite,mite,south,,,Ceratozetes.gracilis,Blowout,100,0.0106164302731468,0.00750841241084873,0.0149880205340671,0.0108663421303504,0.0109914572771295,0.00285084223309845 +mite,mite,south,,,Ceratozetes.gracilis,ThinBreak,100,0.0100023530575543,0.00713221526399667,0.0151216579187232,0.00996372938352331,0.010576056083143,0.00295273404015073 +mite,mite,south,,,Ceratozetes.gracilis,Other,100,0.00285130809642912,0.000101118018037353,0.00743907317965016,0.0042686164608738,0.00350980399830382,0.0038272703327426 +mite,mite,south,,,Ceratozetes.gracilis,EnSeismic,100,0.0130401380795003,0.00435366005996197,0.0330754830379015,0.0128342993205689,0.0170814635762266,0.0166525404966921 +mite,mite,south,,,Ceratozetes.gracilis,EnSoftLin,100,0.0102924247543619,0.00324650421120936,0.0277486879313866,0.0100953485593809,0.0141490588222097,0.0130399901505624 +mite,mite,south,,,Ceratozetes.gracilis,TrSoftLin,100,0.0102847189938328,0.00279080049357203,0.0254343727134683,0.00945493320863686,0.0144058284884293,0.0162798944680607 +mite,mite,south,,,Ceratozetes.gracilis,HardLin,100,0.00172706208804757,0.000996929138804491,0.00393348070878101,0.00176154072489266,0.00213010115548512,0.00145912006365012 +mite,mite,south,,,Ceratozetes.gracilis,UrbInd,100,0.0039628758778972,0.00211335243425556,0.00710782015189878,0.00425941571595646,0.00426261570874479,0.00191363522851145 +mite,mite,south,,,Ceratozetes.gracilis,Wellsites,100,0.0027009806728237,0.00149047759913996,0.00482753019017241,0.00295291600474109,0.00294556322835924,0.00121844007487498 +mite,mite,south,,,Ceratozetes.gracilis,Crop,100,0.00112015158953501,0.000621622425743416,0.00166528554264314,0.00116588959329944,0.00114986660736074,0.000438343754479232 +mite,mite,south,,,Ceratozetes.gracilis,TameP,100,0.00232266134017774,0.00139360598228216,0.00353940845617135,0.0023921447017999,0.00239362551481446,0.000813973185962879 +mite,mite,south,,,Ceratozetes.gracilis,RoughP,100,0.00211685562463439,0.00127547133416824,0.00320495261851502,0.00218127936434137,0.00218626885047647,0.000735849839265448 +mite,mite,south,,,Trhypochthonius.tectorum,Loamy,100,0.0470529314676834,0.0376452069298754,0.0573364532768487,0.0467852744100426,0.0471963975350964,0.00757283986936928 +mite,mite,south,,,Trhypochthonius.tectorum,SandyLoam,100,0.0393188210496049,0.0317570066163126,0.0505922519547563,0.0397630370091323,0.0403446530565519,0.00723995897255233 +mite,mite,south,,,Trhypochthonius.tectorum,ClaySub,100,0.0441221401186896,0.0348258207136508,0.0540688929937451,0.0429142869672478,0.0442173498448386,0.00745688387165952 +mite,mite,south,,,Trhypochthonius.tectorum,RapidDrain,100,0.0429446462142846,0.0309531561381015,0.0573176487200439,0.0431738225185761,0.0440169099919195,0.0100075147269474 +mite,mite,south,,,Trhypochthonius.tectorum,Blowout,100,0.0613980929107618,0.0444893990555643,0.0800980694171302,0.0612889561023144,0.0621805598273461,0.0136830063795955 +mite,mite,south,,,Trhypochthonius.tectorum,ThinBreak,100,0.0488732975000633,0.034807762913829,0.0627557924258179,0.0472879860660164,0.0492254653355117,0.0111923080460222 +mite,mite,south,,,Trhypochthonius.tectorum,Other,100,0.0434047494376434,0.0185953184517959,0.0732786601264563,0.0478734329425522,0.0464658745400846,0.0214128096122872 +mite,mite,south,,,Trhypochthonius.tectorum,EnSeismic,100,0.00729491531775858,0.00134384078550448,0.0352776795058778,0.00888461717648373,0.0121191464020125,0.0134009865099468 +mite,mite,south,,,Trhypochthonius.tectorum,EnSoftLin,100,0.005054862643996,0.000686096697873137,0.028888306158472,0.00723292387135889,0.0100522713976956,0.0123293721152311 +mite,mite,south,,,Trhypochthonius.tectorum,TrSoftLin,100,0.00354166934651207,0.000526901991710471,0.0191185163808752,0.00426948908637977,0.00686047524995818,0.00907740456293233 +mite,mite,south,,,Trhypochthonius.tectorum,HardLin,100,0.0265810295226765,0.0183667081325354,0.0418300138472186,0.0281443034455901,0.0297306166509946,0.0115605435677219 +mite,mite,south,,,Trhypochthonius.tectorum,UrbInd,100,0.0207363761383396,0.0157483535172429,0.0273652110269722,0.0197564607327612,0.0210572000049293,0.00499192984568332 +mite,mite,south,,,Trhypochthonius.tectorum,Wellsites,100,0.0224023944118342,0.0168895972496268,0.033419627126577,0.0219652759405907,0.023954850040603,0.00706568665198014 +mite,mite,south,,,Trhypochthonius.tectorum,Crop,100,0.017809169135038,0.0136813934657548,0.0223986341927857,0.0177171723605232,0.0179274457683187,0.00341616056207771 +mite,mite,south,,,Trhypochthonius.tectorum,TameP,100,0.0329959057560339,0.0247071237519022,0.0425767343304029,0.0334374326549006,0.0335595926782762,0.00692213792534352 +mite,mite,south,,,Trhypochthonius.tectorum,RoughP,100,0.0329994435322929,0.0242922933753898,0.0419613581986879,0.0330917206876311,0.0332028650097164,0.006610821542073 +vascular_plant,vascular_plant,north,,,Galium.boreale,WhiteSpruce,100,0.127553758484456,0.113289243781686,0.145793199455345,0.128707314176715,0.128796062147493,0.013007661076526 +vascular_plant,vascular_plant,north,,,Galium.boreale,Pine,100,0.108955925044229,0.0957676335868903,0.121710750848212,0.108967866096832,0.108351745403268,0.0107265765791882 +vascular_plant,vascular_plant,north,,,Galium.boreale,Deciduous,100,0.241372233011862,0.220034122464472,0.266694870222414,0.243876909457892,0.243659484927762,0.0197426930050828 +vascular_plant,vascular_plant,north,,,Galium.boreale,Mixedwood,100,0.178778506098878,0.160640646852916,0.202395172918118,0.180205162477876,0.17984344492889,0.0163679473839349 +vascular_plant,vascular_plant,north,,,Galium.boreale,BlackSpruce,100,0.0187782142691025,0.015964300046416,0.0226797713763728,0.0190889513235295,0.019041832481739,0.00244056358910533 +vascular_plant,vascular_plant,north,,,Galium.boreale,TreedFen,100,0.0182300985481856,0.0155869374274711,0.0213101320238899,0.0184868712710714,0.0183681248477089,0.00226273417160384 +vascular_plant,vascular_plant,north,,,Galium.boreale,TreedSwamp,100,0.0489905119990067,0.0406831036041512,0.0588922836638695,0.0502065849301497,0.049668187228406,0.00697805614211441 +vascular_plant,vascular_plant,north,,,Galium.boreale,GraminoidFen,100,0.0205710682967682,0.0173260282328867,0.0238196676548976,0.0207928426181494,0.0206389281702567,0.00251882049201599 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyFen,100,0.0197809807291042,0.0170176415190405,0.0232179729140465,0.0201391073392683,0.02003638682334,0.00245452451637146 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyBog,100,0.0189975548566431,0.016106408373278,0.0228984011430078,0.0193388406568705,0.0192790728427318,0.00241270465171995 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbySwamp,100,0.0447291601123411,0.0372002282332073,0.0537771294419815,0.045688982509881,0.0449865151048965,0.00628547151128001 +vascular_plant,vascular_plant,north,,,Galium.boreale,Marsh,100,0.0400296013396869,0.0339797315283422,0.0482707062137736,0.041347185000327,0.0407750103106754,0.00588771629603271 +vascular_plant,vascular_plant,north,,,Galium.boreale,Shrub,100,0.18907722205489,0.158133983291896,0.226967213882432,0.189304761120091,0.19193489701901,0.0276456783157394 +vascular_plant,vascular_plant,north,,,Galium.boreale,Grass,100,0.192746378044792,0.157583264970756,0.232822033472814,0.191616359545112,0.192693761026825,0.02997193804278 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruceR,100,0.139771532900036,0.122864642823011,0.163451301515697,0.143043678232451,0.142402520792232,0.0161423405856056 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce1,100,0.155611334310893,0.134410271192256,0.183467241440467,0.158059058434557,0.157849283808776,0.0189186520059976 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce2,100,0.147075023373237,0.129067149876702,0.17207528089181,0.148743886710094,0.149318549331036,0.017504025426788 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce3,100,0.147075023373237,0.129067149876702,0.17207528089181,0.148743886710094,0.149318549331036,0.017504025426788 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce4,100,0.147075023373237,0.129067149876702,0.17207528089181,0.148743886710094,0.149318549331036,0.017504025426788 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPineR,100,0.126976622075385,0.109938656621522,0.147407721758117,0.126516675922557,0.127832186299505,0.0151248328398744 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine1,100,0.122513104169474,0.108000083373688,0.145223319244307,0.123115076680262,0.123962737645099,0.0146478698276742 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine2,100,0.119873522249871,0.106405839563384,0.141816708804904,0.12088426096238,0.121838379620067,0.014209461866893 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine3,100,0.119873522249871,0.106405839563384,0.141816708804904,0.12088426096238,0.121838379620067,0.014209461866893 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine4,100,0.119873522249871,0.106405839563384,0.141816708804904,0.12088426096238,0.121838379620067,0.014209461866893 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduousR,100,0.186245878992867,0.158028867231833,0.214167386420386,0.186398225011703,0.186195866339547,0.0216494748185888 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous1,100,0.23244452871587,0.203199107267026,0.259685430492979,0.232409451432954,0.231840964621742,0.0225002523430394 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous2,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous3,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous4,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwoodR,100,0.186245878992867,0.158028867231833,0.214167386420386,0.186398225011703,0.186195866339547,0.0216494748185888 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood1,100,0.23244452871587,0.203199107267026,0.259685430492979,0.232409451432954,0.231840964621742,0.0225002523430394 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood2,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood3,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood4,100,0.188871498909763,0.165882114081511,0.21799453956701,0.189116187021577,0.190587986445644,0.021334226566674 +vascular_plant,vascular_plant,north,,,Galium.boreale,EnSeismic,100,0.0684127509811156,0.0461026705159623,0.0902429019148571,0.0666893133709304,0.0689755583869489,0.0158138857163119 +vascular_plant,vascular_plant,north,,,Galium.boreale,EnSoftLin,100,0.0657473898696688,0.0451327378465087,0.085281441946568,0.0632085789748528,0.0649343941875756,0.0145829472393909 +vascular_plant,vascular_plant,north,,,Galium.boreale,TrSoftLin,100,0.0681060743732122,0.0481327167421853,0.0919013653345719,0.0681813236346331,0.0709321070591346,0.0170495782117984 +vascular_plant,vascular_plant,north,,,Galium.boreale,HardLin,100,0.0290796037159192,0.0226468944868902,0.0371235878593936,0.0304014203144609,0.0298044336668042,0.00586063788962763 +vascular_plant,vascular_plant,north,,,Galium.boreale,UrbInd,100,0.0314455583025649,0.0243668260868827,0.0390372701872881,0.0323859521239614,0.0315530323558585,0.00584114067994535 +vascular_plant,vascular_plant,north,,,Galium.boreale,Wellsites,100,0.0291970725038963,0.0238113981197312,0.0382847796733579,0.0313114303488669,0.0305656324578105,0.00660294912502294 +vascular_plant,vascular_plant,north,,,Galium.boreale,Crop,100,0.0111652842565444,0.00880517519519721,0.0136809290660141,0.0114819275038514,0.0113227914177259,0.00193888932017755 +vascular_plant,vascular_plant,north,,,Galium.boreale,TameP,100,0.0269173744709538,0.022161090016068,0.0351044154738296,0.0283837215953415,0.0277503822450967,0.00501106373570373 +vascular_plant,vascular_plant,north,,,Galium.boreale,RoughP,100,0.0521909976524265,0.0417966506150089,0.0641619106018613,0.0532646872909717,0.0529717525667589,0.00973795593720889 +vascular_plant,vascular_plant,north,,,Vicia.americana,WhiteSpruce,100,0.0718938762699661,0.065522696765919,0.0798106439015097,0.0717211911881468,0.0725977267567331,0.00563682804127588 +vascular_plant,vascular_plant,north,,,Vicia.americana,Pine,100,0.0728131267960009,0.0654406767176047,0.0809459002779932,0.0717443897992296,0.0728749487408402,0.0058785135142674 +vascular_plant,vascular_plant,north,,,Vicia.americana,Deciduous,100,0.175077778947436,0.160477428709062,0.190250604332435,0.174528296976248,0.17569683865892,0.011256562044079 +vascular_plant,vascular_plant,north,,,Vicia.americana,Mixedwood,100,0.124747004168891,0.112997101961524,0.137620684398948,0.123903841395087,0.12516922700485,0.0096249396448139 +vascular_plant,vascular_plant,north,,,Vicia.americana,BlackSpruce,100,0.0110328507388287,0.0096399806180506,0.0130858712423737,0.0110635169948055,0.0112685399330146,0.00134343272899701 +vascular_plant,vascular_plant,north,,,Vicia.americana,TreedFen,100,0.0113471842207546,0.00964942926341955,0.013113823637351,0.0111781283427943,0.0113828092292095,0.00146545726852783 +vascular_plant,vascular_plant,north,,,Vicia.americana,TreedSwamp,100,0.0517168416386495,0.0428941150967696,0.0582602738231228,0.0505384149026876,0.0512297805540599,0.00605747635095315 +vascular_plant,vascular_plant,north,,,Vicia.americana,GraminoidFen,100,0.0131292956458153,0.0111313158989054,0.0151950003456498,0.0128602111397556,0.0131824466140795,0.00166985702505421 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyFen,100,0.0130557210422519,0.011170589861637,0.0149638550509235,0.0127117113440904,0.0130775185102786,0.00162119223031025 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyBog,100,0.0114543665391066,0.0100663755576266,0.0135024169520157,0.0114521553910913,0.0116726682614781,0.00136050206238942 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbySwamp,100,0.0484390085818499,0.0402914981342877,0.055126029820677,0.0467803608934761,0.0476897065339272,0.0058260170421952 +vascular_plant,vascular_plant,north,,,Vicia.americana,Marsh,100,0.0426084194139497,0.0357335702041887,0.0503816410277392,0.0426749909362641,0.0429269157877606,0.0056115466343738 +vascular_plant,vascular_plant,north,,,Vicia.americana,Shrub,100,0.134463632651396,0.111079537665107,0.167506911738807,0.129561071424494,0.136418372918483,0.0229473091150908 +vascular_plant,vascular_plant,north,,,Vicia.americana,Grass,100,0.145695104101512,0.119734577295392,0.174889591224679,0.140899561631048,0.147070367329623,0.022344266089559 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruceR,100,0.114550306373856,0.0993089964475131,0.131361775920081,0.113324612808195,0.115487525143517,0.0132164795710855 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce1,100,0.14103703098598,0.124028035673944,0.162202698291648,0.140904763899433,0.143082044614008,0.0154031178112864 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce2,100,0.131953034684507,0.113615097220766,0.151869368310281,0.129378591587472,0.131853207828598,0.0156539808144563 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce3,100,0.131953034684507,0.113615097220766,0.151869368310281,0.129378591587472,0.131853207828598,0.0156539808144563 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce4,100,0.131953034684507,0.113615097220766,0.151869368310281,0.129378591587472,0.131853207828598,0.0156539808144563 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPineR,100,0.11508620494656,0.0994156544963205,0.13244408431865,0.113106276644051,0.11552562193363,0.0131618121776528 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine1,100,0.123142537606029,0.105632230140533,0.143490829969477,0.121735348725543,0.124258421760436,0.0145751442917898 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine2,100,0.119705316322808,0.103641193950962,0.140619276756987,0.118682344001148,0.121257985010326,0.0145795484691634 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine3,100,0.119705316322808,0.103641193950962,0.140619276756987,0.118682344001148,0.121257985010326,0.0145795484691634 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine4,100,0.119705316322808,0.103641193950962,0.140619276756987,0.118682344001148,0.121257985010326,0.0145795484691634 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduousR,100,0.152124830067326,0.133544864165947,0.175305638727617,0.151623580611421,0.153461778458343,0.0173557629909717 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous1,100,0.184659133485438,0.166142068257671,0.205228943128526,0.183212683986236,0.185204680261222,0.0177851175609689 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous2,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous3,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous4,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwoodR,100,0.152124830067326,0.133544864165947,0.175305638727617,0.151623580611421,0.153461778458343,0.0173557629909717 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood1,100,0.184659133485438,0.166142068257671,0.205228943128526,0.183212683986236,0.185204680261222,0.0177851175609689 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood2,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood3,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCMixedwood4,100,0.157097813486801,0.140716060116589,0.176780860327043,0.156982604814944,0.159013311175707,0.01626923578841 +vascular_plant,vascular_plant,north,,,Vicia.americana,EnSeismic,100,0.227984185699081,0.182697762644403,0.268075547778391,0.216656015711896,0.22549833720806,0.0350942267380164 +vascular_plant,vascular_plant,north,,,Vicia.americana,EnSoftLin,100,0.251898960152857,0.197501604057775,0.303794430527756,0.240353254005159,0.250615724994273,0.0428020965716178 +vascular_plant,vascular_plant,north,,,Vicia.americana,TrSoftLin,100,0.193360163656671,0.152735846909453,0.233564003895846,0.185413846451138,0.194440633110592,0.032222108284406 +vascular_plant,vascular_plant,north,,,Vicia.americana,HardLin,100,0.0503517083933858,0.0406906810771272,0.057207565447589,0.0494242045429297,0.0502807016445855,0.00685847508732078 +vascular_plant,vascular_plant,north,,,Vicia.americana,UrbInd,100,0.0569429183862386,0.0467741046942416,0.0698021645350327,0.0570164101210413,0.0577366825930307,0.00915124018474235 +vascular_plant,vascular_plant,north,,,Vicia.americana,Wellsites,100,0.0582542415293737,0.0492420688838092,0.072522262101972,0.0583800066861835,0.0592289801070774,0.00918535165247656 +vascular_plant,vascular_plant,north,,,Vicia.americana,Crop,100,0.0211500724874513,0.0173461431155818,0.0255989585678105,0.020499648487122,0.0211699145247759,0.00303604961753705 +vascular_plant,vascular_plant,north,,,Vicia.americana,TameP,100,0.0435672149887537,0.0373869653969824,0.0510944416333782,0.0435685547091363,0.044313221722824,0.00563223862688737 +vascular_plant,vascular_plant,north,,,Vicia.americana,RoughP,100,0.043846430274289,0.0351508187542827,0.0537746650557631,0.0428632794956036,0.0443637398984316,0.00706146660401651 +vascular_plant,vascular_plant,south,,,Galium.boreale,Loamy,100,0.129500940974137,0.115939309445366,0.142274497903155,0.129566548831882,0.129240853795985,0.0115416674256052 +vascular_plant,vascular_plant,south,,,Galium.boreale,SandyLoam,100,0.0857250013819348,0.074918471210341,0.0955729389327586,0.0846341790254643,0.0851598736210075,0.00833736021508994 +vascular_plant,vascular_plant,south,,,Galium.boreale,ClaySub,100,0.106687868360369,0.0945989972253909,0.118118926321666,0.106582920663178,0.106854880512545,0.00967661294897962 +vascular_plant,vascular_plant,south,,,Galium.boreale,RapidDrain,100,0.0444259052224488,0.0370887507031826,0.0544787766009444,0.0448318785090138,0.0454968404778373,0.00732755620188049 +vascular_plant,vascular_plant,south,,,Galium.boreale,Blowout,100,0.0494917415022332,0.0400908509128027,0.0607316821253998,0.0506231282331206,0.0503188623756279,0.0084026342739103 +vascular_plant,vascular_plant,south,,,Galium.boreale,ThinBreak,100,0.050196369920066,0.0417742214072058,0.0617894587769758,0.051022562219615,0.0513379224827594,0.00822845380908435 +vascular_plant,vascular_plant,south,,,Galium.boreale,Other,100,0.017627591043033,0.00832319478531489,0.0262510663473293,0.0177197087652051,0.017666003959619,0.00762654707576144 +vascular_plant,vascular_plant,south,,,Galium.boreale,EnSeismic,100,0.0298332308491259,0.00665290942030116,0.0883739859793193,0.0287456404184259,0.0393855192253098,0.031448344876531 +vascular_plant,vascular_plant,south,,,Galium.boreale,EnSoftLin,100,0.0356643308697568,0.00815049483193348,0.0962598538206375,0.0329811808897455,0.044956194023266,0.0364568897668611 +vascular_plant,vascular_plant,south,,,Galium.boreale,TrSoftLin,100,0.0151785468876201,0.00315552839085169,0.0469611481992711,0.0143164876649795,0.0223359571021198,0.0227776011061573 +vascular_plant,vascular_plant,south,,,Galium.boreale,HardLin,100,0.00530533940676456,0.00357352907909973,0.00769820184184741,0.00538608376568717,0.00552156158485169,0.00163740166004282 +vascular_plant,vascular_plant,south,,,Galium.boreale,UrbInd,100,0.00513913795154246,0.00340813940966367,0.00765270261403539,0.00519980939835304,0.00523551607625795,0.0015142317430679 +vascular_plant,vascular_plant,south,,,Galium.boreale,Wellsites,100,0.0075659534991398,0.00468498736027471,0.010499833024864,0.00769427442003421,0.00762310484662108,0.0024315841748219 +vascular_plant,vascular_plant,south,,,Galium.boreale,Crop,100,0.00220924093158883,0.0016315224352595,0.00292405129721133,0.00225132683231577,0.0022324280717503,0.000517350089267903 +vascular_plant,vascular_plant,south,,,Galium.boreale,TameP,100,0.00435782124370936,0.00318179566112214,0.00598717741751823,0.00460921237816997,0.00448619710295349,0.00115215504127008 +vascular_plant,vascular_plant,south,,,Galium.boreale,RoughP,100,0.00676055646464444,0.00497274280972717,0.00939454269522582,0.00706698519527935,0.00699789083679393,0.00181974186477918 +vascular_plant,vascular_plant,south,,,Vicia.americana,Loamy,100,0.265972148373478,0.242287028584286,0.292996262069099,0.273848614363572,0.268599613290613,0.0211926916218184 +vascular_plant,vascular_plant,south,,,Vicia.americana,SandyLoam,100,0.235273442190418,0.210669358202386,0.2556676178462,0.239431294773893,0.233973068361635,0.0193118427691581 +vascular_plant,vascular_plant,south,,,Vicia.americana,ClaySub,100,0.288960584282476,0.26080611763151,0.312347722688886,0.291486932950625,0.285342627501447,0.0213426405353579 +vascular_plant,vascular_plant,south,,,Vicia.americana,RapidDrain,100,0.145101330988633,0.125225402064062,0.172908596854141,0.149586849572318,0.146948753219377,0.0197577211901731 +vascular_plant,vascular_plant,south,,,Vicia.americana,Blowout,100,0.103255761150176,0.0855803189991817,0.119522691203027,0.103869081093715,0.102814719445737,0.0145407069929839 +vascular_plant,vascular_plant,south,,,Vicia.americana,ThinBreak,100,0.16348293728827,0.137954755437052,0.192107090305501,0.165570611241508,0.163566383765758,0.0221510355545733 +vascular_plant,vascular_plant,south,,,Vicia.americana,Other,100,0.104089826815298,0.061125190047659,0.142683171579958,0.102651600983928,0.103085689284634,0.0309931807594616 +vascular_plant,vascular_plant,south,,,Vicia.americana,EnSeismic,100,0.14221481558795,0.0695404958743992,0.255946616619785,0.142317281363727,0.149598673965513,0.0723962381693527 +vascular_plant,vascular_plant,south,,,Vicia.americana,EnSoftLin,100,0.181462585200596,0.0987020255490379,0.325824340743188,0.184942717247886,0.193602241082009,0.084865760436336 +vascular_plant,vascular_plant,south,,,Vicia.americana,TrSoftLin,100,0.0815692405916386,0.0396564843391643,0.171492515686953,0.0865561569046063,0.0958107335873707,0.0567018478528168 +vascular_plant,vascular_plant,south,,,Vicia.americana,HardLin,100,0.0310763764532084,0.0247188818481437,0.0406604173221723,0.0319213954295495,0.0316277142678068,0.00609188143308462 +vascular_plant,vascular_plant,south,,,Vicia.americana,UrbInd,100,0.0240985318144326,0.0177443606501332,0.0338942420684754,0.0250464912812154,0.0250630230245002,0.00613341942247783 +vascular_plant,vascular_plant,south,,,Vicia.americana,Wellsites,100,0.0252581376812261,0.0185153826242813,0.0353645894229116,0.0262553863998158,0.0263994257398057,0.00667184958399021 +vascular_plant,vascular_plant,south,,,Vicia.americana,Crop,100,0.0220865654232207,0.0178076846647027,0.0265483658480201,0.0226673334870154,0.0222516342022707,0.00366254182999097 +vascular_plant,vascular_plant,south,,,Vicia.americana,TameP,100,0.029914062581048,0.0230508386019083,0.0354564538178308,0.0306301444015498,0.0295993258154593,0.0048628156572677 +vascular_plant,vascular_plant,south,,,Vicia.americana,RoughP,100,0.0365057939530349,0.0288807230736535,0.0445328884121597,0.0374123655632768,0.0364482426262393,0.00580554468813297 diff --git a/3_output/exp_000_parity_v2/tables/metric_summary.csv b/3_output/exp_000_parity_v2/tables/metric_summary.csv index 546c2e7..ecfde92 100644 --- a/3_output/exp_000_parity_v2/tables/metric_summary.csv +++ b/3_output/exp_000_parity_v2/tables/metric_summary.csv @@ -1,617 +1,617 @@ taxon,run,region,season,part,species,metric,n,median,p10,p90,boot1,mean,sd -bird,bird,north,,,AMRO,insample_auc,5,0.72487649207557,0.722489112963132,0.72576145123834,0.721701661835893,0.724313916200942,0.00170956352292163 -bird,bird,north,,,AMRO,insample_deviance_explained,5,0.142215080261758,0.140707166105981,0.144363142127984,0.140587647159979,0.142358220452553,0.00199530922315655 -bird,bird,north,,,AMRO,insample_rmse,5,0.663619993960517,0.661624845419777,0.664719637388853,0.664239276180889,0.663325410909454,0.00165768430943888 -bird,bird,north,,,AMRO,insample_spearman,5,0.344389309730045,0.340479678130316,0.345510088540595,0.339249301212572,0.343324801699925,0.00266479191004938 -bird,bird,north,,,AMRO,insample_calibration_slope,5,0.80440117768677,0.799100431621395,0.810804150827482,0.80440117768677,0.805142929671317,0.00621763816210709 -bird,bird,north,,,AMRO,insample_prevalence,5,0.251486631016043,0.251004373826971,0.252433263182893,0.250861017819325,0.251649276245993,0.000745639638422784 -bird,bird,north,,,AMRO,insample_n,5,46747,46745.2,46750,46747,46747.6,2.50998007960223 -bird,bird,north,,,AMRO,oob_auc,5,0.730373137296335,0.729897207197475,0.730684827423547,0.730766733254682,0.730315896538717,0.000399387356506946 -bird,bird,north,,,AMRO,oob_deviance_explained,5,0.151664799728976,0.150795650809459,0.152520757577584,0.152754178062373,0.151645303910227,0.000851367053496551 -bird,bird,north,,,AMRO,oob_rmse,5,0.658090400254619,0.657748490410106,0.658646272283023,0.657851304309638,0.658152604633444,0.000488187377741323 -bird,bird,north,,,AMRO,oob_spearman,5,0.348000943732488,0.347176086570868,0.348405542162744,0.348509330988823,0.34783832412029,0.000612352651071532 -bird,bird,north,,,AMRO,oob_calibration_slope,5,0.878884682385081,0.857978242744613,0.881378788597934,0.881696624797909,0.871660692760926,0.0122350948521806 -bird,bird,north,,,AMRO,oob_prevalence,5,0.241010939026539,0.240656718532255,0.241191818078906,0.241245385459292,0.240950250724789,0.000279167052473422 -bird,bird,north,,,AMRO,oob_n,5,124877,124874,124878.8,124877,124876.4,2.50998007960223 -bird,bird,north,,,YEWA,insample_auc,5,0.778635633427003,0.778333348933502,0.779726988023268,0.779841092447633,0.778948847840918,0.000705556804087617 -bird,bird,north,,,YEWA,insample_deviance_explained,5,0.259141214360432,0.25548753680516,0.260976441286628,0.259141214360432,0.258564177416315,0.00302380870747948 -bird,bird,north,,,YEWA,insample_rmse,5,0.547361440801496,0.544308917361954,0.551849139043791,0.547158394049375,0.547972539003203,0.00399109094044317 -bird,bird,north,,,YEWA,insample_spearman,5,0.315565876581618,0.314186701701599,0.31608982965666,0.316093683296469,0.315273234600625,0.00100534988197753 -bird,bird,north,,,YEWA,insample_calibration_slope,5,0.705708332778131,0.69321277112837,0.712055437422832,0.716264166431109,0.703225661526711,0.009932019727973 -bird,bird,north,,,YEWA,insample_prevalence,5,0.118296361263824,0.117706951871658,0.119214980837802,0.118296361263824,0.118418937588893,0.00074585019883292 -bird,bird,north,,,YEWA,insample_n,5,46747,46745.2,46750,46747,46747.6,2.50998007960223 -bird,bird,north,,,YEWA,oob_auc,5,0.728595786591222,0.728230136724689,0.73005150345856,0.730809600284142,0.728967653050156,0.00107004022194788 -bird,bird,north,,,YEWA,oob_deviance_explained,5,0.179475572495229,0.177360125449593,0.182723444677448,0.183210182399369,0.179952283630345,0.00265860832017606 -bird,bird,north,,,YEWA,oob_rmse,5,0.591197627682823,0.582204245542092,0.591914132572009,0.581496589737255,0.587923953982158,0.00511357694956418 -bird,bird,north,,,YEWA,oob_spearman,5,0.273873998143111,0.273042129222169,0.27544277961002,0.276382265893519,0.274116908523614,0.00138126305304161 -bird,bird,north,,,YEWA,oob_calibration_slope,5,0.66953950556298,0.63693641889123,0.713887951481982,0.718728425403305,0.674429581507813,0.0378468170998992 -bird,bird,north,,,YEWA,oob_prevalence,5,0.13458843502006,0.134244406707603,0.134809487963868,0.13458843502006,0.134542639141448,0.000279456693593184 -bird,bird,north,,,YEWA,oob_n,5,124877,124874,124878.8,124877,124876.4,2.50998007960223 -bird,bird,south,,,AMRO,insample_auc,5,0.689537506786954,0.689085767534014,0.694179854134546,0.689537506786954,0.69116429025569,0.00267686382030874 -bird,bird,south,,,AMRO,insample_deviance_explained,5,0.0914919911243302,0.0907862366206112,0.0936622473347538,0.0905093060629211,0.0920142540132908,0.0015677422769352 -bird,bird,south,,,AMRO,insample_rmse,5,0.742475038662062,0.740051841768597,0.745694348908307,0.746104469516561,0.742888160715582,0.00289570319718642 -bird,bird,south,,,AMRO,insample_spearman,5,0.289206389172517,0.287837179517966,0.295789973779885,0.287696121760142,0.291229007576228,0.00408372016605238 -bird,bird,south,,,AMRO,insample_calibration_slope,5,0.885482053955006,0.883345065042026,0.893982715783319,0.885403476414633,0.887857917212169,0.00576920241512031 -bird,bird,south,,,AMRO,insample_prevalence,5,0.258598079444985,0.257039179794386,0.259660332963851,0.25655668358714,0.258393144664086,0.00135079625989253 -bird,bird,south,,,AMRO,insample_n,5,23639,23636.8,23639.6,23640,23638.4,1.51657508881031 -bird,bird,south,,,AMRO,oob_auc,5,0.689591934626615,0.688348632550972,0.689843166919568,0.689591934626615,0.68924802394965,0.000920081348058652 -bird,bird,south,,,AMRO,oob_deviance_explained,5,0.0984328670162571,0.094117282107193,0.0994994384196623,0.0984328670162571,0.0973395768527953,0.00316116064937106 -bird,bird,south,,,AMRO,oob_rmse,5,0.735225643291462,0.734322072987703,0.736655125441161,0.734395013830007,0.735378999246935,0.00121712350913242 -bird,bird,south,,,AMRO,oob_spearman,5,0.291547044066434,0.289653619948351,0.29213277997847,0.291376773818019,0.291100972713629,0.00151818475240607 -bird,bird,south,,,AMRO,oob_calibration_slope,5,0.934404203818623,0.926891186190493,0.961180760134325,0.953623540744284,0.941985087798582,0.0175025538271432 -bird,bird,south,,,AMRO,oob_prevalence,5,0.259989876131491,0.259616009340861,0.260538534890505,0.260708383581223,0.260061995930024,0.000475417680104008 -bird,bird,south,,,AMRO,oob_n,5,67168,67167.4,67170.2,67167,67168.6,1.51657508881031 -bird,bird,south,,,YEWA,insample_auc,5,0.719332020865892,0.7167959223474,0.722607418769604,0.721262730392428,0.719662412560823,0.00297152545331512 -bird,bird,south,,,YEWA,insample_deviance_explained,5,0.231210217495144,0.222251823593889,0.235961745747393,0.229114411717017,0.229807382164686,0.00749454908006547 -bird,bird,south,,,YEWA,insample_rmse,5,0.625043487437273,0.62080865697937,0.628590391800858,0.629305991109963,0.624889605300925,0.00399863862852713 -bird,bird,south,,,YEWA,insample_spearman,5,0.295095530582618,0.291167713950288,0.299659209105424,0.297439751075024,0.295393951865559,0.00438378006368663 -bird,bird,south,,,YEWA,insample_calibration_slope,5,0.866874540634912,0.862503477222317,0.872567336726769,0.860619291916303,0.867538534232098,0.00505022303747937 -bird,bird,south,,,YEWA,insample_prevalence,5,0.171376597004823,0.170895553957443,0.17183640258529,0.171742808798646,0.171382167859753,0.000475861876686407 -bird,bird,south,,,YEWA,insample_n,5,23639,23636.8,23639.6,23640,23638.4,1.51657508881031 -bird,bird,south,,,YEWA,oob_auc,5,0.714680925082376,0.712798268254752,0.716148435308362,0.716561203894474,0.714502329965285,0.00165165381687826 -bird,bird,south,,,YEWA,oob_deviance_explained,5,0.20248138732713,0.197183679478114,0.207430346720716,0.208119807948008,0.202298579885998,0.00504819057507152 -bird,bird,south,,,YEWA,oob_rmse,5,0.638667289278492,0.636815197956095,0.639153235243619,0.636772974666958,0.63809587657418,0.00120027991161497 -bird,bird,south,,,YEWA,oob_spearman,5,0.291734550104421,0.289334731699639,0.29340482100249,0.294073915420202,0.291424590009334,0.00203454648872441 -bird,bird,south,,,YEWA,oob_calibration_slope,5,0.871741212363925,0.853830810138639,0.901368353942083,0.871741212363925,0.875139424030135,0.0275139438874958 -bird,bird,south,,,YEWA,oob_prevalence,5,0.175869820899522,0.175707986864887,0.176039185326346,0.175741063319785,0.175867891893267,0.000167508533766851 -bird,bird,south,,,YEWA,oob_n,5,67168,67167.4,67170.2,67167,67168.6,1.51657508881031 -bryophyte,bryophyte,north,,,Bryum.All,insample_auc,5,0.638127846001886,0.629068513424739,0.639705775242135,0.638127846001886,0.635308902250384,0.00556090012471537 -bryophyte,bryophyte,north,,,Bryum.All,insample_deviance_explained,5,-0.275950193493276,-0.30093504049497,-0.246978357823554,-0.24424818155784,-0.273766521408161,0.0268076084815421 -bryophyte,bryophyte,north,,,Bryum.All,insample_rmse,5,0.479527636307096,0.479331369604887,0.480302514101111,0.479248548520264,0.479762898472393,0.000494745588454859 -bryophyte,bryophyte,north,,,Bryum.All,insample_spearman,5,0.234421074075063,0.218639785436767,0.237098983905807,0.234421074075063,0.229509973229964,0.00968700796838076 -bryophyte,bryophyte,north,,,Bryum.All,insample_calibration_slope,5,0.76525545060837,0.744233658530692,0.8107675025251,0.800400269549026,0.775500149433843,0.0336341853608396 -bryophyte,bryophyte,north,,,Bryum.All,insample_prevalence,5,0.398261429491307,0.395579807718977,0.401857219116663,0.400041220115416,0.3986710498744,0.00332558122320578 -bryophyte,bryophyte,north,,,Bryum.All,insample_n,5,3097,3072.4,4153.6,4852,3440.8,789.041633882522 -bryophyte,bryophyte,north,,,Bryum.All,oob_auc,4,0.630809068622639,0.623078012227396,0.646295585466171,,0.6335788759256,0.0130102647026339 -bryophyte,bryophyte,north,,,Bryum.All,oob_deviance_explained,4,-0.19138651532205,-0.229639096179351,-0.14780622710667,,-0.189483762694165,0.0443897167597502 -bryophyte,bryophyte,north,,,Bryum.All,oob_rmse,4,0.480264599990569,0.480001687050415,0.482221755757651,,0.480869686714472,0.00145214204934777 -bryophyte,bryophyte,north,,,Bryum.All,oob_spearman,4,0.222299987465914,0.20864983396156,0.249132606040734,,0.227008010705366,0.022676062398745 -bryophyte,bryophyte,north,,,Bryum.All,oob_calibration_slope,4,0.767411113061744,0.685944635693733,0.863863918531363,,0.772763373098032,0.0990836541433614 -bryophyte,bryophyte,north,,,Bryum.All,oob_prevalence,4,0.403358051486104,0.397360409603543,0.408630979157295,,0.403099224982043,0.006528394280969 -bryophyte,bryophyte,north,,,Bryum.All,oob_n,5,1755,698.4,1779.6,0,1411.2,789.041633882522 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Climate,5,0.562296054365257,0.554173006352827,0.563975593348497,0.563268568361301,0.559777731714894,0.00502167306258926 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Climate_Truncated,5,0.562295197193571,0.554169893407269,0.56396889522421,0.563263005953167,0.559774417476873,0.00502075379775713 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Landcover,5,0.59031873097319,0.582725624858305,0.592734774936281,0.59031873097319,0.58822375369532,0.00508433205604652 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Full,5,0.638127846001886,0.629068513424739,0.639705775242135,0.638127846001886,0.635308902250384,0.00556090012471537 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Truncated,5,0.639020549706553,0.629556667762114,0.64021053224959,0.639020549706553,0.635852413234428,0.00561081241692955 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Joint,5,0.63656986211763,0.627565538171321,0.638033581053569,0.63656986211763,0.633648909724541,0.00542015487462954 -bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Joint_Truncated,5,0.637367602039122,0.62809310218947,0.638655312558534,0.637500263262641,0.634239708554392,0.00549431056719841 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Climate,4,0.557120566175802,0.540969693146743,0.575367468760527,,0.557869148159969,0.0192626917262308 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Climate_Truncated,4,0.557104758803387,0.540966602037286,0.575374474456983,,0.557866029834635,0.0192692966023613 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Landcover,4,0.586912742882926,0.576860469268986,0.598756809203001,,0.587552668849403,0.0117834395761671 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full,4,0.630809068622639,0.623078012227396,0.646295585466171,,0.6335788759256,0.0130102647026339 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Truncated,4,0.63137585065822,0.623530655084542,0.647529866197263,,0.634343286360136,0.0135026415297771 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Joint,4,0.62971870560941,0.622041714357572,0.644532558641158,,0.63226758481652,0.012530612942673 -bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Joint_Truncated,4,0.630321350629701,0.622479940089637,0.645772715128109,,0.63303919132911,0.0130277082370542 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_auc,5,0.698174658798715,0.69094551695802,0.709058701464829,0.694675016541229,0.699837511037708,0.00901778644380229 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_deviance_explained,5,-0.114510476579041,-0.131813022554523,-0.0904615002285642,-0.127187969172517,-0.111764640500469,0.0203388736323564 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_rmse,5,0.466695436776973,0.462912051047972,0.467727184931025,0.467432435043113,0.465613065181239,0.00244205972530663 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_spearman,5,0.341399187547095,0.328255177404971,0.359282419780438,0.334844748701068,0.343616320027039,0.0154028239772293 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_calibration_slope,5,0.886684142091591,0.88294240979435,0.897629158250886,0.897907532572089,0.889629148428203,0.00742841787636394 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_prevalence,5,0.441055234954658,0.434155026365629,0.445516968426104,0.441055234954658,0.440040906513639,0.00592042164227121 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_n,5,3068,3031.6,4152,4852,3417.8,802.273768734838 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_auc,4,0.669185680513321,0.66194940480315,0.689277603994979,,0.673776983288852,0.0156568896063866 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_deviance_explained,4,-0.185591758024389,-0.197381970216131,-0.141841988806489,,-0.174177630515047,0.0329785238818983 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_rmse,4,0.475105452566444,0.469359003725674,0.481375013261819,,0.475292278228802,0.00645345889371808 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_spearman,4,0.29101450640103,0.278786640187495,0.325621827918843,,0.299007169009701,0.0269716818569824 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_calibration_slope,4,0.772810531065414,0.725727448039512,0.851082802104523,,0.783949526784417,0.0700828360330596 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_prevalence,4,0.443665764352131,0.432608384046217,0.454192825112108,,0.443476364514296,0.0116999631210214 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_n,5,1784,700,1820.4,0,1434.2,802.273768734838 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Climate,5,0.656006784390431,0.650667856695395,0.664851582602822,0.652571065182321,0.657491388780721,0.00702864165145057 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Climate_Truncated,5,0.656014130093929,0.650669976200325,0.664873979724118,0.652577122144193,0.657501706850359,0.00703792811898215 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Landcover,5,0.626159436771152,0.623847896625279,0.63744965808967,0.626159436771152,0.629605667370405,0.00700538360157201 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full,5,0.698174658798715,0.69094551695802,0.709058701464829,0.694675016541229,0.699837511037708,0.00901778644380229 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Truncated,5,0.698175100984084,0.691211313926766,0.709267355194508,0.694914692057453,0.700043394374941,0.00901659546042277 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Joint,5,0.693839915631032,0.687220562229904,0.705393695319871,0.69133661745651,0.696035361241937,0.00910536620980844 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Joint_Truncated,5,0.693823112587028,0.687469531659753,0.705583368208495,0.69158473589171,0.69622715639523,0.00910978022700139 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Climate,4,0.636250911438379,0.627380368267631,0.653685141830713,,0.639309371160374,0.0145611916830304 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Climate_Truncated,4,0.636263529886685,0.627402598788168,0.653701328647776,,0.639326696909033,0.0145585625333492 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Landcover,4,0.608585612621007,0.595998860291286,0.617214693566341,,0.607172158555155,0.0115275207748297 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full,4,0.669185680513321,0.66194940480315,0.689277603994979,,0.673776983288852,0.0156568896063866 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Truncated,4,0.669430040893281,0.6621007168852,0.689600433702903,,0.674016136893831,0.0157430215314559 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Joint,4,0.667551944528101,0.659697874596654,0.686791205149657,,0.671618084060283,0.0153861204532186 -bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Joint_Truncated,4,0.667760268462804,0.659841527855415,0.687057304097503,,0.671823945258272,0.015448661895241 -bryophyte,bryophyte,south,,,Bryum.All,insample_auc,5,0.624781080501705,0.619098305791523,0.631250290557445,0.631477859980203,0.62531135077244,0.00613408721709493 -bryophyte,bryophyte,south,,,Bryum.All,insample_deviance_explained,5,-0.0882074375042718,-0.116317967526412,-0.0745997780131311,-0.0659569204939741,-0.0940636853986955,0.0217357006072699 -bryophyte,bryophyte,south,,,Bryum.All,insample_rmse,5,0.473712635656491,0.473250036655967,0.475178356015742,0.473182584522988,0.474116438717835,0.000979445089225269 -bryophyte,bryophyte,south,,,Bryum.All,insample_spearman,5,0.208905797682641,0.198735688372861,0.219564280666345,0.21996433153061,0.209499332030303,0.0105641202170489 -bryophyte,bryophyte,south,,,Bryum.All,insample_calibration_slope,5,0.874557636620987,0.806197667935386,0.910286420946533,0.929039182089329,0.863965312292241,0.0611476778254253 -bryophyte,bryophyte,south,,,Bryum.All,insample_prevalence,5,0.370562770562771,0.365528360602252,0.371569237798783,0.370562770562771,0.369235286484943,0.00385091464779508 -bryophyte,bryophyte,south,,,Bryum.All,insample_n,5,1444,1429.8,1968,2310,1614.6,388.936113005722 -bryophyte,bryophyte,south,,,Bryum.All,oob_auc,4,0.622587939645232,0.609906666129414,0.635174456157602,,0.622554097858286,0.0139528811025767 -bryophyte,bryophyte,south,,,Bryum.All,oob_deviance_explained,4,-0.0294046792827352,-0.0439442359246929,0.0123272085791315,,-0.019693132418482,0.0322171478788032 -bryophyte,bryophyte,south,,,Bryum.All,oob_rmse,4,0.475290386543187,0.473040753420391,0.476838977026333,,0.475040014171884,0.00206603954639396 -bryophyte,bryophyte,south,,,Bryum.All,oob_spearman,4,0.204907419101645,0.18388423679321,0.22723046467613,,0.205371655982377,0.0239816446700714 -bryophyte,bryophyte,south,,,Bryum.All,oob_calibration_slope,4,0.862631630882613,0.796586982841539,0.926986747501851,,0.862028226803386,0.0714420365714851 -bryophyte,bryophyte,south,,,Bryum.All,oob_prevalence,4,0.3703593055487,0.368749240306309,0.380219211352906,,0.37330567717792,0.0072755089177001 -bryophyte,bryophyte,south,,,Bryum.All,oob_n,5,866,342,880.2,0,695.4,388.936113005722 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Climate,5,0.562296054365257,0.554173006352827,0.563975593348497,0.563268568361301,0.559777731714894,0.00502167306258926 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Climate_Truncated,5,0.562295197193571,0.554169893407269,0.56396889522421,0.563263005953167,0.559774417476873,0.00502075379775713 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Landcover,5,0.590977483143704,0.588222769171523,0.60141327621516,0.604777025029246,0.593896071204394,0.0070332679741888 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Full,5,0.624781080501705,0.619098305791523,0.631250290557445,0.631477859980203,0.62531135077244,0.00613408721709493 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Truncated,5,0.624781080501705,0.619154420181747,0.631292646881434,0.631535708776305,0.625345448851566,0.00612033629471389 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Joint,5,0.624358409137791,0.618605858115063,0.631039389378428,0.630846343956086,0.624944360355056,0.00625821729858158 -bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Joint_Truncated,5,0.624356386786767,0.618642020722096,0.631057597953052,0.630860002699611,0.624962990194972,0.0062460677616445 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Climate,4,0.557120566175802,0.540969693146743,0.575367468760527,,0.557869148159969,0.0192626917262308 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Climate_Truncated,4,0.557104758803387,0.540966602037286,0.575374474456983,,0.557866029834635,0.0192692966023613 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Landcover,4,0.597272483474034,0.596765466015466,0.601974542549405,,0.598770712622892,0.00348361543505928 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full,4,0.622587939645232,0.609906666129414,0.635174456157602,,0.622554097858286,0.0139528811025767 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Truncated,4,0.622567363513545,0.609906666129414,0.63516211047859,,0.622543809792443,0.0139501445980818 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Joint,4,0.622331585916656,0.607992717674767,0.636786215054005,,0.622372929093606,0.0160574239141607 -bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Joint_Truncated,4,0.622313949232352,0.607992717674767,0.636775633043423,,0.622364110751454,0.0160556605380964 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_auc,5,0.717485896729522,0.71685899652647,0.72287874285206,0.717485896729522,0.719337658395294,0.00314832137641283 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_deviance_explained,5,0.0555144394517471,0.0525022042487002,0.0659817133460382,0.0552076565672067,0.0580917971366114,0.00804978167070715 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_rmse,5,0.403372277591519,0.398339551678763,0.406855811762638,0.403372277591519,0.402708178674735,0.00422999542451598 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_spearman,5,0.324238098784219,0.318040132102534,0.330331200221374,0.321683515420121,0.324176941097839,0.00635489788234709 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_calibration_slope,5,0.900294144555213,0.878293846695361,0.929217371465325,0.926240194199798,0.903277573722839,0.025082790791702 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_prevalence,5,0.23982683982684,0.231460603487586,0.246697056850865,0.23982683982684,0.239405392468179,0.00765174673579537 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_n,5,1462,1452.8,1977.6,2310,1631.4,379.498089586759 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_auc,4,0.715093054248096,0.709938966718536,0.716833687112666,,0.713873963296314,0.00407985613655125 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_deviance_explained,4,0.0485196427393902,0.0213884985438529,0.0541796492701325,,0.0408513792876777,0.0205022125506785 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_rmse,4,0.406296961312814,0.398165216308586,0.415127438523745,,0.406546508529494,0.00911762395306138 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_spearman,4,0.316460819822169,0.305912040269855,0.327620546786264,,0.316679015326377,0.0116401179241884 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_calibration_slope,4,0.856225115735854,0.811357325680967,0.90322965680456,,0.856988241097932,0.0492572682113721 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_prevalence,4,0.238999572635154,0.227667581639544,0.255610993801512,,0.240885083410421,0.0151422609821477 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_n,5,848,332.4,857.2,0,678.6,379.498089586759 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Climate,5,0.656006784390431,0.650667856695395,0.664851582602822,0.652571065182321,0.657491388780721,0.00702864165145057 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Climate_Truncated,5,0.656014130093929,0.650669976200325,0.664873979724118,0.652577122144193,0.657501706850359,0.00703792811898215 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Landcover,5,0.633036828963795,0.625748811394207,0.642238687874322,0.630393575816386,0.633819706982903,0.00839614169240918 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full,5,0.717485896729522,0.71685899652647,0.72287874285206,0.717485896729522,0.719337658395294,0.00314832137641283 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Truncated,5,0.717485896729522,0.71685899652647,0.72287874285206,0.717485896729522,0.719337658395294,0.00314832137641283 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Joint,5,0.718564200718732,0.717751679375772,0.723867311169212,0.718564200718732,0.720297293047133,0.00318115267699769 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Joint_Truncated,5,0.718564200718732,0.717751679375772,0.723867311169212,0.718564200718732,0.720297293047133,0.00318115267699769 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Climate,4,0.636250911438379,0.627380368267631,0.653685141830713,,0.639309371160374,0.0145611916830304 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Climate_Truncated,4,0.636263529886685,0.627402598788168,0.653701328647776,,0.639326696909033,0.0145585625333492 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Landcover,4,0.621073947742974,0.605174465777582,0.638800057775284,,0.621726314909731,0.0180551389037002 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full,4,0.715093054248096,0.709938966718536,0.716833687112666,,0.713873963296314,0.00407985613655125 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Truncated,4,0.715093054248096,0.709938966718536,0.716833687112666,,0.713873963296314,0.00407985613655125 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Joint,4,0.716849054867145,0.711184101825957,0.718706027458805,,0.715489061849456,0.00457687182026539 -bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Joint_Truncated,4,0.716849054867145,0.711184101825957,0.718706027458805,,0.715489061849456,0.00457687182026539 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_auc,5,0.778362159718991,0.777313519482956,0.781078019062442,0.776659932196605,0.778941977854504,0.00220139213343037 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_deviance_explained,5,0.129922817133758,0.116058360191463,0.137037124714767,0.126180029301491,0.127497727648612,0.0115563906422122 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_rmse,5,0.428984342825858,0.426484514201266,0.429776953204885,0.429796613403064,0.428367541663588,0.00170602773901413 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_spearman,5,0.46931020347218,0.467301179157511,0.473793771369763,0.466302441462258,0.470210732962937,0.00348588836105702 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_calibration_slope,5,1.02280943622485,1.00638380806286,1.02708521369247,1.02280943622485,1.0184707448443,0.011026980822553 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_prevalence,5,0.384787472035794,0.382719077877937,0.387875670039505,0.384787472035794,0.385092893007771,0.00278105998275642 -lichen,lichen,north,,,Cladonia.chlorophaea,insample_n,5,3685,3644,4976.6,5811,4102.6,955.610956404331 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_auc,4,0.766320433722221,0.757378470612268,0.770532908104046,,0.764631330605033,0.00773409788726129 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_deviance_explained,4,0.113996779288933,0.0998702886563739,0.140537458619322,,0.118430418109587,0.0237257998755231 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_rmse,4,0.434233197376139,0.431409497762948,0.437875343465515,,0.434525499689062,0.00353785187767737 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_spearman,4,0.448965855284841,0.434402780928462,0.454722953452224,,0.445820863788771,0.0120096288277829 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_calibration_slope,4,0.967661500539704,0.947481883037204,0.982662848959669,,0.965812118724513,0.0194935179999311 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_prevalence,4,0.385212683681362,0.378550429000763,0.388624647224836,,0.384051865418103,0.00565743785692542 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_n,5,2126,834.4,2167,0,1708.4,955.610956404331 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Climate,5,0.726648362079003,0.7237588448296,0.731162951758353,0.723004804073768,0.72719557447664,0.00380494512788104 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Climate_Truncated,5,0.726660385143037,0.723768652905815,0.731181039693866,0.72301652132686,0.727208895973783,0.00380873317415131 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Landcover,5,0.714897867010021,0.711070873547497,0.715616075360572,0.710689730662897,0.713682108226793,0.00234024727927697 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full,5,0.778362159718991,0.777313519482956,0.781078019062442,0.776659932196605,0.778941977854504,0.00220139213343037 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Truncated,5,0.778213392638019,0.777186308510683,0.780963739171022,0.77651231594881,0.778814568724427,0.00222483325194008 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Joint,5,0.777290152345703,0.776349528728965,0.780295682938712,0.77578324180292,0.778055337809396,0.00214296304404187 -lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Joint_Truncated,5,0.777190658438047,0.776223771512686,0.780168440645134,0.775630371417491,0.777933926824515,0.00215290328592244 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Climate,4,0.714982827935826,0.71142147790233,0.716134560839275,,0.714122250389381,0.00278710207176498 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Climate_Truncated,4,0.714986555031238,0.711429083580888,0.716141935437511,,0.714128665372639,0.00278474056829603 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Landcover,4,0.6993486440522,0.695238223478961,0.703833711587922,,0.699482446538801,0.00471231540415982 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full,4,0.766320433722221,0.757378470612268,0.770532908104046,,0.764631330605033,0.00773409788726129 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Truncated,4,0.766446335783094,0.757266971247998,0.770241672495975,,0.764523468703731,0.00779476503948412 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Joint,4,0.76558237025298,0.756446722492137,0.76890475840522,,0.76350620610705,0.00763281653645435 -lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Joint_Truncated,4,0.765720545345162,0.756181429801128,0.768751167860589,,0.763396083549231,0.00772657199336835 -lichen,lichen,north,,,Physcia.adscendens,insample_auc,5,0.837335108574662,0.833892427673138,0.841684373333987,0.838268220834197,0.837631185433223,0.00421142443545695 -lichen,lichen,north,,,Physcia.adscendens,insample_deviance_explained,5,0.153309875432323,0.124539848626552,0.181355576712871,0.153309875432323,0.153462981135222,0.0313003485289416 -lichen,lichen,north,,,Physcia.adscendens,insample_rmse,5,0.394413849121186,0.390679733700768,0.396338542998067,0.393389135816662,0.393852028605293,0.00305493252353979 -lichen,lichen,north,,,Physcia.adscendens,insample_spearman,5,0.569716833320736,0.562212442609498,0.574320845837935,0.569949863531718,0.568531717754906,0.00642768440020838 -lichen,lichen,north,,,Physcia.adscendens,insample_calibration_slope,5,0.977543215514836,0.973882604264117,0.992189734009598,0.974581235728712,0.981283244985178,0.01051079416882 -lichen,lichen,north,,,Physcia.adscendens,insample_prevalence,5,0.382961350027218,0.378754207234193,0.387054085275807,0.384099122354156,0.382969715660275,0.00456567123234541 -lichen,lichen,north,,,Physcia.adscendens,insample_n,5,3699,3673.4,4975,5811,4115.6,947.965083745177 -lichen,lichen,north,,,Physcia.adscendens,oob_auc,4,0.839292658298271,0.829533400959301,0.846965637654569,,0.838547559018745,0.00938564979201381 -lichen,lichen,north,,,Physcia.adscendens,oob_deviance_explained,4,0.143454749419506,0.0949908751245048,0.205499371215224,,0.148305016384047,0.0631136911709378 -lichen,lichen,north,,,Physcia.adscendens,oob_rmse,4,0.391817546344859,0.388424442525194,0.400850115043751,,0.393831640944583,0.00707925330540285 -lichen,lichen,north,,,Physcia.adscendens,oob_spearman,4,0.570820101540557,0.556966290991812,0.585222167374373,,0.571015906999511,0.0152763365469035 -lichen,lichen,north,,,Physcia.adscendens,oob_calibration_slope,4,0.993551581711484,0.96245857697318,1.01756614536709,,0.991023567039093,0.0304614734345619 -lichen,lichen,north,,,Physcia.adscendens,oob_prevalence,4,0.386432660247333,0.378648004672367,0.394703317951312,,0.386606232436266,0.00923888826136022 -lichen,lichen,north,,,Physcia.adscendens,oob_n,5,2112,836,2137.6,0,1695.4,947.965083745177 -lichen,lichen,north,,,Physcia.adscendens,v2val_Climate,5,0.693422907498,0.690915989050979,0.694883881152127,0.693422907498,0.692986505923955,0.00201451745990401 -lichen,lichen,north,,,Physcia.adscendens,v2val_Climate_Truncated,5,0.693419511127206,0.690911780963104,0.694883929491704,0.693419511127206,0.692985163486467,0.00201463625805256 -lichen,lichen,north,,,Physcia.adscendens,v2val_Landcover,5,0.801861109542011,0.782213209132931,0.812598365772438,0.812994033294577,0.799562929201212,0.0178185824794553 -lichen,lichen,north,,,Physcia.adscendens,v2val_Full,5,0.837335108574662,0.833892427673138,0.841684373333987,0.838268220834197,0.837631185433223,0.00421142443545695 -lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Truncated,5,0.837482703696643,0.83402227575171,0.841815848139725,0.838439032548488,0.837773708478258,0.00421550438320122 -lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Joint,5,0.836047248740013,0.832067905608026,0.840315800616736,0.836357683360022,0.836103552465423,0.0046074652071796 -lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Joint_Truncated,5,0.836286222674123,0.832185134167773,0.840452132671447,0.836525866238843,0.836258764262809,0.00461711990867249 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Climate,4,0.690146520368093,0.687623451889863,0.696399093335788,,0.691478486257188,0.00495021261044504 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Climate_Truncated,4,0.690133662354544,0.687619313393814,0.696403232441228,,0.69147481275667,0.00495756138170841 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Landcover,4,0.80689396202876,0.792826777899119,0.818710192371022,,0.806090049961839,0.0145903596426596 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full,4,0.839292658298271,0.829533400959301,0.846965637654569,,0.838547559018745,0.00938564979201381 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Truncated,4,0.839479011781648,0.829796481228334,0.8470008753914,,0.83870734501609,0.00926667222581543 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Joint,4,0.835740019351969,0.826152734502598,0.845016117951229,,0.835628881405501,0.0101826777472231 -lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Joint_Truncated,4,0.835910659316576,0.826439317818255,0.845028920277397,,0.835784559124612,0.0100393680766585 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_auc,5,0.782940004828585,0.771430317517624,0.78704102003786,0.782940004828585,0.780384815223684,0.00892062786427006 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_deviance_explained,5,0.101560194956707,0.0833055588905147,0.10855690687591,0.0760150539678254,0.0977267101316104,0.0134864921912352 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_rmse,5,0.273630488580498,0.266940670870867,0.27923536011912,0.27615265636656,0.273137946045151,0.00613430562265861 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_spearman,5,0.278345072756788,0.271410866729923,0.283855802016148,0.284558850730728,0.277868922002142,0.00614111968498575 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_calibration_slope,5,1.00445803190767,0.923032164793458,1.06063235332037,1.00400781901235,0.998413735524807,0.0779356859153725 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_prevalence,5,0.0907849829351536,0.0854880550520455,0.0942546707117982,0.092924126172208,0.0900691492139895,0.00433337917377339 -lichen,lichen,south,,,Cladonia.chlorophaea,insample_n,5,1482,1471.8,2004.4,2346,1653.4,387.296785424305 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_auc,4,0.767777065619901,0.759098616020395,0.777508870753697,,0.768153264025005,0.0103158231014254 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_deviance_explained,4,0.00020738830490835,-0.0197727594970929,0.0186135944535137,,-0.0003547337141616,0.0206046152183967 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_rmse,4,0.285215861553978,0.278859149933553,0.293735548818788,,0.285988352855544,0.00803695663998821 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_spearman,4,0.280771471067578,0.258586974156161,0.293911115946987,,0.277541166770433,0.0193124585097445 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_calibration_slope,4,1.11452074384603,0.83884295294175,1.23312243580024,,1.05842213707815,0.227871215589685 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_prevalence,4,0.0997452652709462,0.0913286406440493,0.106312613843352,,0.0990848095371992,0.00808662138066247 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_n,5,864,341.6,874.2,0,692.6,387.296785424305 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Climate,5,0.726648362079003,0.7237588448296,0.731162951758353,0.723004804073768,0.72719557447664,0.00380494512788104 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Climate_Truncated,5,0.726660385143037,0.723768652905815,0.731181039693866,0.72301652132686,0.727208895973783,0.00380873317415131 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Landcover,5,0.746232134390029,0.738477213352093,0.757183243479499,0.74708991515486,0.747240463783824,0.0106065443436887 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full,5,0.782940004828585,0.771430317517624,0.787041020037861,0.782940004828585,0.780384815223684,0.0089206278642703 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Truncated,5,0.782940004828585,0.771430317517624,0.787041020037861,0.782940004828585,0.780384815223684,0.0089206278642703 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Joint,5,0.783724649927571,0.773780455672375,0.788033764122229,0.783724649927571,0.781776344950047,0.00786739974674226 -lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Joint_Truncated,5,0.783724649927571,0.773780455672375,0.788033764122229,0.783724649927571,0.781776344950047,0.00786739974674226 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Climate,4,0.714982827935826,0.71142147790233,0.716134560839275,,0.714122250389381,0.00278710207176498 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Climate_Truncated,4,0.714986555031238,0.711429083580888,0.716141935437511,,0.714128665372639,0.00278474056829603 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Landcover,4,0.75082184394749,0.74168570185442,0.752461597648907,,0.748144562379042,0.00674874952586361 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full,4,0.767777065619901,0.759098616020395,0.777508870753697,,0.768153264025005,0.0103158231014254 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Truncated,4,0.767777065619901,0.759098616020395,0.777508870753697,,0.768153264025005,0.0103158231014254 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Joint,4,0.76868800182822,0.762466250385714,0.777619034446911,,0.769655602248286,0.00865338800241536 -lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Joint_Truncated,4,0.76868800182822,0.762466250385714,0.777619034446911,,0.769655602248286,0.00865338800241536 -lichen,lichen,south,,,Physcia.adscendens,insample_auc,5,0.821353781719635,0.817185593102722,0.825672849056938,0.821573724007562,0.82133199677784,0.00470181458246041 -lichen,lichen,south,,,Physcia.adscendens,insample_deviance_explained,5,0.239704709286469,0.231908892003898,0.24739316046634,0.239704709286469,0.239170938481984,0.00836987471623949 -lichen,lichen,south,,,Physcia.adscendens,insample_rmse,5,0.356794925429378,0.352929674110169,0.358725757363671,0.356794925429378,0.356142732606163,0.00305057472651177 -lichen,lichen,south,,,Physcia.adscendens,insample_spearman,5,0.458171869563314,0.449023619570466,0.466231041170605,0.458171869563314,0.457232139057486,0.00919412871966326 -lichen,lichen,south,,,Physcia.adscendens,insample_calibration_slope,5,0.881651302841094,0.877029058458768,0.905002744726106,0.895884570463108,0.888780956639862,0.014710326211831 -lichen,lichen,south,,,Physcia.adscendens,insample_prevalence,5,0.215686274509804,0.210370852380551,0.218705697782215,0.215686274509804,0.214933253293698,0.00478783760132252 -lichen,lichen,south,,,Physcia.adscendens,insample_n,5,1487,1480.8,2014,2346,1662.2,382.531305908418 -lichen,lichen,south,,,Physcia.adscendens,oob_auc,4,0.816688066173278,0.814577556447952,0.819582119521717,,0.816967903181533,0.00271138269936014 -lichen,lichen,south,,,Physcia.adscendens,oob_deviance_explained,4,0.229581557918766,0.221042427704859,0.242028578202743,,0.230977232943791,0.0116106526749679 -lichen,lichen,south,,,Physcia.adscendens,oob_rmse,4,0.361221111344793,0.357219734510275,0.363119037857434,,0.360469879086979,0.00328089666967988 -lichen,lichen,south,,,Physcia.adscendens,oob_spearman,4,0.454435749483605,0.444604153459308,0.459399541619317,,0.452697248094824,0.00824469525388058 -lichen,lichen,south,,,Physcia.adscendens,oob_calibration_slope,4,0.869323881706107,0.820424126275093,0.95799881977588,,0.883529304077092,0.0756154292842296 -lichen,lichen,south,,,Physcia.adscendens,oob_prevalence,4,0.21549434057534,0.209833885194357,0.226186106799465,,0.217291237305033,0.00944381193189753 -lichen,lichen,south,,,Physcia.adscendens,oob_n,5,859,332,865.2,0,683.8,382.531305908418 -lichen,lichen,south,,,Physcia.adscendens,v2val_Climate,5,0.693422907498,0.690915989050979,0.694883881152127,0.693422907498,0.692986505923955,0.00201451745990401 -lichen,lichen,south,,,Physcia.adscendens,v2val_Climate_Truncated,5,0.693419511127206,0.690911780963104,0.694883929491704,0.693419511127206,0.692985163486467,0.00201463625805256 -lichen,lichen,south,,,Physcia.adscendens,v2val_Landcover,5,0.755367662346663,0.753354388319629,0.769154488554709,0.755514263619179,0.75923726755233,0.0106880634487565 -lichen,lichen,south,,,Physcia.adscendens,v2val_Full,5,0.821353781719635,0.817185593102722,0.825672849056938,0.821573724007562,0.82133199677784,0.00470181458246041 -lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Truncated,5,0.821369179600887,0.817185593102722,0.825672849056938,0.821573724007562,0.82133507635409,0.00470183746079766 -lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Joint,5,0.818351194875585,0.815473629919288,0.821595518961059,0.818413816807012,0.818450596628366,0.0035138580973253 -lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Joint_Truncated,5,0.818366592756837,0.815473629919288,0.821595518961059,0.818413816807012,0.818453676204616,0.0035137559475432 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Climate,4,0.690146520368093,0.687623451889863,0.696399093335788,,0.691478486257188,0.00495021261044504 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Climate_Truncated,4,0.690133662354544,0.687619313393814,0.696403232441228,,0.69147481275667,0.00495756138170841 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Landcover,4,0.757543713583416,0.754237750244239,0.765899299116814,,0.759347150081352,0.00659093377352209 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full,4,0.816688066173278,0.814577556447952,0.819582119521717,,0.816967903181533,0.00271138269936014 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Truncated,4,0.816692374438254,0.814577556447952,0.819584704480702,,0.81697005731402,0.00271219354015405 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Joint,4,0.812861687935889,0.810647101871693,0.815758867203804,,0.813105471222931,0.00283145974958857 -lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Joint_Truncated,4,0.81287030446584,0.810647101871693,0.815764037121775,,0.813109779487907,0.00283515421967582 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_auc,5,0.820367038624296,0.819088803830954,0.825096132690793,0.820911148938545,0.821548232901657,0.00368021243181869 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_deviance_explained,5,0.274643755760762,0.273047064346357,0.2795535093301,0.272167552780268,0.275794916286106,0.0037829114549962 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_rmse,5,0.325649814939506,0.323044576138151,0.32774821127909,0.327783381237672,0.325475899728406,0.0023268778087488 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_spearman,5,0.457622037926128,0.455146980332479,0.464800704476141,0.457622037926128,0.459282943376137,0.0052329898486681 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_calibration_slope,5,0.987210797047211,0.964756720342875,1.04226829149403,0.987210797047211,0.999628097376395,0.040457896858658 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_prevalence,5,0.22526523562793,0.222685585610422,0.228865718677616,0.22526523562793,0.225662811559798,0.00324773944134521 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_n,5,2588,2554.4,3469,4053,2869.4,661.914873680899 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_auc,4,0.807437018082126,0.795187683185118,0.814600712078279,,0.805620717760392,0.0109848697690175 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_deviance_explained,4,0.234952851608951,0.215144910318834,0.252509532861174,,0.234148830166846,0.0201759809192477 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_rmse,4,0.33540874228767,0.32943601838744,0.340042074806677,,0.334930388222947,0.00571392258320504 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_spearman,4,0.436123893428745,0.419582521233002,0.446016838076314,,0.433749455018683,0.0150488838521891 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_calibration_slope,4,0.947080559125973,0.940176391586403,0.972191240627968,,0.953582885541124,0.0195519425313773 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_prevalence,4,0.224511499051979,0.218291264544164,0.230417458254175,,0.224399257871401,0.00661456979352361 -mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_n,5,1465,584,1498.6,0,1183.6,661.914873680899 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_auc,5,0.61119205862304,0.608247846213005,0.619766590249117,0.614800455189874,0.613133257123311,0.00617079565055122 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_deviance_explained,5,0.0293312456190202,0.0254868824061227,0.034855941334284,0.0327130199155846,0.0299655255688071,0.00466042949610858 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_rmse,5,0.440494520447441,0.439655702708701,0.441992443932362,0.440494520447441,0.440710638869574,0.00129009568326754 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_spearman,5,0.166867112583273,0.161253581705846,0.173443277843013,0.166867112583273,0.166942767059625,0.00668917082484309 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_calibration_slope,5,0.871613828265815,0.807561232834562,0.918699876937025,0.901041907949805,0.864331745671229,0.05473797753352 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_prevalence,5,0.320047355958958,0.317847829087179,0.320941159211816,0.321243523316062,0.319582666739872,0.00164288413830535 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_n,5,2587,2537.6,3467,4053,2861,666.806193732482 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_auc,4,0.599789507623449,0.585096398809124,0.610287133771428,,0.598291120956897,0.0139243777141284 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_deviance_explained,4,0.0222358139724005,0.0154302383695453,0.0289963709245666,,0.0222197358828687,0.00780005134828563 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_rmse,4,0.444244510956,0.443337295940116,0.444727707984992,,0.444093075960681,0.000801980504115758 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_spearman,4,0.1428985967646,0.125110680243685,0.165466638254086,,0.144605784253376,0.0220824267179884 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_calibration_slope,4,0.750011624893702,0.699600524966396,0.836834785057386,,0.76301593212098,0.0752804461935625 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_prevalence,4,0.324076824388238,0.322733281306541,0.3276244709432,,0.324864004200118,0.00280085582083958 -mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_n,5,1466,586,1515.4,0,1192,666.806193732482 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_auc,5,0.634240369366988,0.632910641847936,0.642195650517714,0.634240369366988,0.636730093444244,0.00492494577892738 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_deviance_explained,5,0.0264112493368064,0.0244020509882967,0.0303865560800429,0.0264112493368064,0.0271321926805094,0.00319183688778419 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_rmse,5,0.418769573067301,0.41254704078318,0.420323940326511,0.421286846656193,0.41688100357794,0.00397229497435235 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_spearman,5,0.175369074792115,0.169472066216479,0.19311238624043,0.175369074792115,0.17910418059275,0.0143000493783131 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_calibration_slope,5,0.975536082659011,0.869669271029773,0.999133512851468,1.00531761653027,0.942116568564117,0.0667346863953477 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_prevalence,5,0.691079812206573,0.689952548788955,0.71053806886065,0.691079812206573,0.698355803841802,0.0110051698108056 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_n,5,675,672.2,911.8,1065,753.4,174.236333753899 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_auc,4,0.590185162579443,0.588561095758765,0.594993617451278,,0.591322444026285,0.00370894024345057 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_deviance_explained,4,-0.00660912212895907,-0.0246222554112858,0.00596211189481146,,-0.00855265757844343,0.0170007059445371 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_rmse,4,0.438945021715404,0.435169754735052,0.442994297582763,,0.439042882032192,0.00430413105762848 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_spearman,4,0.119269331592725,0.112670153678564,0.141855035472014,,0.1249788051517,0.0171203610940835 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_calibration_slope,4,0.529521999315492,0.405879483641657,0.748020467389396,,0.56339912517266,0.188100087615398 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_prevalence,4,0.675933879994794,0.656439043984736,0.693034260713775,,0.675078717390838,0.0207397429628256 -mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_n,5,390,153.2,392.8,0,311.6,174.236333753899 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_auc,5,0.800563803516706,0.774332077165384,0.807116397983381,0.786049924840508,0.793142123263336,0.0172774284548912 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_deviance_explained,5,0.235315369629889,0.184794016646685,0.243734500249067,0.205216892616348,0.219402980661022,0.0313035508744373 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_rmse,5,0.345153854253612,0.340273324511787,0.350387335024819,0.345153854253612,0.345250928073386,0.00498539064156107 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_spearman,5,0.399822439479778,0.365817333025682,0.416474286805188,0.381089371361329,0.393764975108055,0.025777771060145 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_calibration_slope,5,0.983951125311349,0.934535204259224,1.0182141754068,0.986324497785332,0.978961877909731,0.0489672106534818 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_prevalence,5,0.182159624413146,0.181333087877553,0.193172072927236,0.182159624413146,0.185526823886116,0.00827314119136472 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_n,5,678,670.6,913,1065,754,173.956891211587 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_auc,4,0.729574202549047,0.71815250764054,0.778542353806383,,0.742983651245057,0.0363678903345032 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_deviance_explained,4,0.0957319747373082,-0.112729476086203,0.182551981226243,,0.0522886017606739,0.177839885253858 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_rmse,4,0.349900330806755,0.341019339169151,0.360550613582775,,0.350532220499047,0.0106010756691699 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_spearman,4,0.291859756320935,0.287348724179463,0.363426726063271,,0.315808305464101,0.0514234239419856 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_calibration_slope,4,0.774041963702232,0.646822148840561,1.18815164727979,,0.876502631100762,0.317190446694699 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_prevalence,4,0.182520739834082,0.160534290271133,0.183610188261351,,0.175057525142768,0.01572313523028 -mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_n,5,387,152,394.4,0,311,173.956891211587 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_auc,5,0.843771320712376,0.837298705573725,0.845386776229526,0.839440907842931,0.841900799199367,0.00416458415403682 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_deviance_explained,5,0.296908480586636,0.290887810793796,0.302200604755114,0.294409607036222,0.296791618459388,0.00570554859270136 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_rmse,5,0.300280860452662,0.299352741208206,0.302368697081708,0.30069616131153,0.300636486451009,0.00169518301694859 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_spearman,5,0.466818565812599,0.461436555661139,0.473138781426199,0.463240577826878,0.467175270468735,0.00576420559514205 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_calibration_slope,5,0.972690836668142,0.921935358308296,0.979611212169833,0.982050704865843,0.955256551495782,0.0299777079445712 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_prevalence,5,0.201509433962264,0.199761756423448,0.205640478898507,0.201356917858008,0.202439531288226,0.00307554695366447 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_n,5,2612,2595.8,3536.2,4127,2916.2,677.217616427689 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_auc,4,0.827458353428436,0.817805717079038,0.840574988117616,,0.828695495692644,0.0124179160962348 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_deviance_explained,4,0.276689902789578,0.265842733106712,0.294949072324388,,0.279337045593844,0.0167940142463136 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_rmse,4,0.303789329751735,0.298771516378234,0.304833455528629,,0.302370155610089,0.00382820840385957 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_spearman,4,0.444765026946551,0.435147313816253,0.460529325956992,,0.446960236189459,0.0143757349540166 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_calibration_slope,4,0.912370954577014,0.861212539179959,0.954228059409819,,0.909049057946925,0.0520155611998991 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_prevalence,4,0.199234448913847,0.193549889929862,0.204483398915383,,0.199078874277258,0.00592784350128194 -mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_n,5,1515,590.8,1531.2,0,1210.8,677.217616427689 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_auc,5,0.672085273881372,0.668633720672182,0.680693747031501,0.668767750495832,0.673650345261601,0.00705894383852787 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_deviance_explained,5,0.0758678220182751,0.0704991263862156,0.0841775407251298,0.0713753243188524,0.0768329848204126,0.00689725835100292 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_rmse,5,0.332910274284271,0.327210641524145,0.335100999244875,0.332910274284271,0.331554332789458,0.00395381643788123 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_spearman,5,0.215829774013176,0.212589282113879,0.226422981371282,0.211955551417089,0.218242903591179,0.00816350970165605 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_calibration_slope,5,0.94812085347111,0.856889525073144,1.03389671800408,0.94812085347111,0.948321951639006,0.092126092648448 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_prevalence,5,0.148776350860189,0.144579171619019,0.151265484707482,0.148776350860189,0.148217744909364,0.00345089736498891 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_n,5,2637,2606,3537,4127,2925.8,671.783223964398 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_auc,4,0.654372882277188,0.640403021566792,0.6605591763494,,0.651593037049265,0.0112866225169797 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_deviance_explained,4,0.0514858356828411,0.0379579660013158,0.0604573235872615,,0.0498585564767322,0.0123265017677637 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_rmse,4,0.337444976131703,0.331449906564068,0.342571110976009,,0.337134642301943,0.00618013722586392 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_spearman,4,0.19099043338874,0.174162150130626,0.204597549588522,,0.189840016582193,0.0164077747297465 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_calibration_slope,4,0.732075381978751,0.657958194547818,0.836247242841193,,0.742809193918576,0.0983856367690785 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_prevalence,4,0.148630312373211,0.144212802079742,0.157027721824677,,0.150051704929638,0.00706694376971498 -mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_n,5,1490,590,1521,0,1201.2,671.783223964398 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_auc,5,0.706112866420923,0.689756836780519,0.712422673247893,0.689082366331686,0.701766116171277,0.0115819259664459 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_deviance_explained,5,0.077948761211899,0.0672394512735814,0.0862779229583741,0.0670547674954939,0.0767109599030692,0.00953073159442438 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_rmse,5,0.401891914348534,0.400056693343447,0.408313222434912,0.406888363248781,0.403660884327179,0.00418719958207863 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_spearman,5,0.328404695790939,0.293718951070702,0.340256897739946,0.296933239332004,0.319246035124502,0.0234446146251979 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_calibration_slope,5,1.02265042079081,0.949079646474498,1.06820491938664,1.03306130883064,1.01079025774546,0.0605675993019255 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_prevalence,5,0.602816901408451,0.593809006916747,0.607790307126989,0.604735883424408,0.60104129788425,0.00700249933764362 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_n,5,696,686.6,942.8,1098,775.8,180.377936566532 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_auc,4,0.642530046696975,0.604052771943084,0.646988682070108,,0.630380532632419,0.0285027427030458 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_deviance_explained,4,0.0177640077575169,-0.00914291472953676,0.0380006855045052,,0.0153817774932079,0.0262728517098914 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_rmse,4,0.423675312133193,0.412365569779127,0.4289659133495,,0.421525618869708,0.00945427379070984 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_spearman,4,0.215041364313525,0.166273559830134,0.234657571247567,,0.204630079474472,0.0385961235199444 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_calibration_slope,4,0.666986903656138,0.480343171377765,0.83150584600084,,0.659085192965541,0.188467730825247 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_prevalence,4,0.614967084834182,0.599715606114469,0.623570700713301,,0.612592848105398,0.0130873792975551 -mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_n,5,402,155.2,411.4,0,322.2,180.377936566532 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_auc,5,0.823493333333333,0.815129597967925,0.847125543751909,0.819927852628077,0.828483048702628,0.0191754521582077 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_deviance_explained,5,0.240858392609539,0.229287932861753,0.282840102014879,0.234870911391229,0.250773020824705,0.0333046711345811 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_rmse,5,0.223331046901821,0.21469247206876,0.227275887816135,0.223331046901821,0.221804231165123,0.00746931749125918 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_spearman,5,0.319693927847967,0.314626273281237,0.331123877059782,0.313170610278462,0.321987168463127,0.00854028427675327 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_calibration_slope,5,0.926166715024209,0.8521293240645,0.969181499315011,0.926166715024209,0.911949295173001,0.0594253375701516 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_prevalence,5,0.0875912408759124,0.0815913826315997,0.0946898807160816,0.0874316939890711,0.0882209860082516,0.00699025063520411 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_n,5,693,685.8,936.8,1098,771.6,182.509725768245 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_auc,4,0.77744050520223,0.771065167348639,0.803486958443855,,0.784465903555099,0.0194119950156149 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_deviance_explained,4,0.17108179189974,0.0694866534919466,0.192858665045726,,0.142575268591952,0.0750549614358755 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_rmse,4,0.226318832277226,0.216290927259541,0.250116289221731,,0.231236529393947,0.0196223161851492 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_spearman,4,0.278455188286047,0.262015370235656,0.285433310292326,,0.275076011127436,0.0140713668010713 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_calibration_slope,4,0.751176575138291,0.529405518004174,0.815471311990914,,0.694935032180614,0.168343487942426 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_prevalence,4,0.0837295205104187,0.0742110480309994,0.0991029746633899,,0.0858205853938301,0.0138195684717859 -mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_n,5,405,161.2,412.2,0,326.4,182.509725768245 -mite,mite,north,,,Ceratozetes.gracilis,insample_auc,5,0.793023395932593,0.785116760768433,0.797585561245424,0.791183069113511,0.791977110922841,0.00673340419157571 -mite,mite,north,,,Ceratozetes.gracilis,insample_deviance_explained,5,0.134692532005047,0.108608328871156,0.141811919550427,0.125527507164404,0.128052047876132,0.0184307041865782 -mite,mite,north,,,Ceratozetes.gracilis,insample_rmse,5,0.364641744759417,0.36299256091057,0.368618183340602,0.364308079016483,0.365438034871869,0.00324688670297244 -mite,mite,north,,,Ceratozetes.gracilis,insample_spearman,5,0.41429348998048,0.402422002613553,0.419681351800533,0.409677886636093,0.412099312835312,0.00911372223585555 -mite,mite,north,,,Ceratozetes.gracilis,insample_calibration_slope,5,1.0224894029886,1.00755092646514,1.03915812721702,1.0224894029886,1.02287359767688,0.0156175294996684 -mite,mite,north,,,Ceratozetes.gracilis,insample_prevalence,5,0.211169769380383,0.208505864577966,0.211369634473166,0.208369812642269,0.210190443530451,0.00151474200965215 -mite,mite,north,,,Ceratozetes.gracilis,insample_n,5,3651,3606.6,4890.2,5711,4047.6,930.188045504779 -mite,mite,north,,,Ceratozetes.gracilis,oob_auc,4,0.779665972511523,0.773198985489411,0.798395168992114,,0.784045333032408,0.0147724589078592 -mite,mite,north,,,Ceratozetes.gracilis,oob_deviance_explained,4,0.0923986988857812,0.0862667569754759,0.144304465844404,,0.108746493545894,0.037849846139005 -mite,mite,north,,,Ceratozetes.gracilis,oob_rmse,4,0.36680003014665,0.360411853868392,0.368997514633471,,0.365303354506851,0.00518143947194182 -mite,mite,north,,,Ceratozetes.gracilis,oob_spearman,4,0.389977816116695,0.383012434237582,0.415943717902066,,0.396763716083216,0.0196903404412637 -mite,mite,north,,,Ceratozetes.gracilis,oob_calibration_slope,4,0.956222238793897,0.921365026616042,1.05973298874715,,0.980741359427966,0.0799378045179831 -mite,mite,north,,,Ceratozetes.gracilis,oob_prevalence,4,0.203407429558746,0.203105380508127,0.206516438658429,,0.204409915290554,0.0022495255846381 -mite,mite,north,,,Ceratozetes.gracilis,oob_n,5,2060,820.8,2104.4,0,1663.4,930.188045504779 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Climate,5,0.738382414749567,0.734358129806975,0.742005285315151,0.738382414749567,0.738111987253943,0.00384260421914782 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Climate_Truncated,5,0.738392463572007,0.734342356311168,0.742026178178654,0.738392463572007,0.738117914905037,0.00385983439540224 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Landcover,5,0.766722893536977,0.759062628411847,0.772422596192916,0.766722893536977,0.766125561315905,0.00683173671440066 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Full,5,0.793023395932593,0.785116760768433,0.797585561245424,0.791183069113511,0.791977110922841,0.00673340419157571 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Truncated,5,0.793016443892401,0.785027851595894,0.797500866905145,0.791105466738786,0.791908988560901,0.00674045451455018 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Joint,5,0.793386060695946,0.785055839040043,0.797509252679056,0.791225262500488,0.792011165992849,0.00676871644676792 -mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Joint_Truncated,5,0.793386524165292,0.784963217939285,0.797444970586129,0.7911589984368,0.791952343573282,0.00679046380342073 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Climate,4,0.731027419469463,0.725410991997312,0.741834431700471,,0.732881199740483,0.00906851156052711 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Climate_Truncated,4,0.731045119285728,0.72540173801145,0.741842884282973,,0.732885970615359,0.00907305785634944 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Landcover,4,0.752661723212296,0.748458309671417,0.773156655512682,,0.758480122769263,0.0155945518677711 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full,4,0.779665972511523,0.773198985489411,0.798395168992114,,0.784045333032408,0.0147724589078592 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Truncated,4,0.77962848748914,0.773216243029163,0.798382692848602,,0.784036330667528,0.014780937706049 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Joint,4,0.779066438961531,0.77354347637541,0.798343558984922,,0.78397863804627,0.0148677753889034 -mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Joint_Truncated,4,0.779044896212606,0.773564180389716,0.798356007315929,,0.783984323098475,0.01488666359881 -mite,mite,north,,,Trhypochthonius.tectorum,insample_auc,5,0.672907942808574,0.669208813819547,0.682343647003947,0.669778092188547,0.674857259308144,0.0070191421865739 -mite,mite,north,,,Trhypochthonius.tectorum,insample_deviance_explained,5,-0.0324180258517079,-0.0527646417815135,-0.0101623689114898,-0.0407269697080057,-0.0321707940218346,0.0231090933708154 -mite,mite,north,,,Trhypochthonius.tectorum,insample_rmse,5,0.288562681524747,0.286522184662904,0.291945228269945,0.288562681524747,0.288981155568958,0.00296084278549151 -mite,mite,north,,,Trhypochthonius.tectorum,insample_spearman,5,0.174619892294846,0.172564649955749,0.187939106716607,0.1729413278484,0.178541440689235,0.00902094001424548 -mite,mite,north,,,Trhypochthonius.tectorum,insample_calibration_slope,5,0.938290627841302,0.909627160028179,0.994839719200875,0.931192865479756,0.95045611024787,0.0429430392043578 -mite,mite,north,,,Trhypochthonius.tectorum,insample_prevalence,5,0.0956049728593941,0.0940001763114542,0.0987931854359719,0.0956049728593941,0.0960754727002272,0.00270898671716411 -mite,mite,north,,,Trhypochthonius.tectorum,insample_n,5,3624,3599.2,4881,5711,4034.4,937.384819591186 -mite,mite,north,,,Trhypochthonius.tectorum,oob_auc,4,0.651421835190664,0.64513479278205,0.663121005511504,,0.653354738016459,0.00989688245354325 -mite,mite,north,,,Trhypochthonius.tectorum,oob_deviance_explained,4,-0.0625612551961812,-0.104386756333539,-0.0317884651562399,,-0.066508652016687,0.0413281120013629 -mite,mite,north,,,Trhypochthonius.tectorum,oob_rmse,4,0.289482213990474,0.281791769789717,0.293681830417276,,0.28823548978549,0.00666038076943173 -mite,mite,north,,,Trhypochthonius.tectorum,oob_spearman,4,0.153802350804888,0.145130738202924,0.167192976536939,,0.155487712637062,0.0120299047392454 -mite,mite,north,,,Trhypochthonius.tectorum,oob_calibration_slope,4,0.866440051991562,0.715195080326882,0.99057532202289,,0.856758015693936,0.149800198792233 -mite,mite,north,,,Trhypochthonius.tectorum,oob_prevalence,4,0.0963264503316864,0.0893459374618542,0.0984905896614327,,0.0946063169245129,0.00535078906761863 -mite,mite,north,,,Trhypochthonius.tectorum,oob_n,5,2087,830,2111.8,0,1676.6,937.384819591186 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Climate,5,0.646091585413555,0.643946189711462,0.652343816700896,0.646091585413555,0.647435005669506,0.00501081050104212 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Climate_Truncated,5,0.646095557008706,0.643948358640746,0.65233771826661,0.646095557008706,0.647436539502018,0.00500120525659027 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Landcover,5,0.637987440117159,0.627044747234771,0.648796943002273,0.637987440117159,0.637774648879966,0.0120277548025983 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full,5,0.672907942808574,0.669208813819547,0.682343647003947,0.669778092188547,0.674857259308144,0.0070191421865739 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Truncated,5,0.672968462835808,0.669234243838635,0.682370652186889,0.669767986128102,0.67489223986993,0.00700566517575936 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Joint,5,0.673039662867848,0.668775078579256,0.682456515305188,0.66926215120794,0.674743399528349,0.00725984991743693 -mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Joint_Truncated,5,0.673102852896284,0.66877285388055,0.682481051437855,0.669242116386356,0.674767969249559,0.0072566620089462 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Climate,4,0.637448091750764,0.62319195321542,0.64083947116042,,0.633567820634447,0.0109633746747622 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Climate_Truncated,4,0.637447116712891,0.623191511787853,0.640852747518307,,0.633572125955883,0.0109617111390789 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Landcover,4,0.619482659509824,0.616517647587969,0.622452812919573,,0.6194844957555,0.00319182447037644 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full,4,0.651421835190664,0.64513479278205,0.663121005511504,,0.653354738016459,0.00989688245354325 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Truncated,4,0.651598760851872,0.645145346470754,0.66328863933151,,0.653468926601344,0.00996350123797742 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint,4,0.650909465977038,0.643507260329979,0.663048883832917,,0.652601327480188,0.0106588967286394 -mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint_Truncated,4,0.65107837071969,0.643490423905209,0.66321170510179,,0.652701723422411,0.0107382013149323 -mite,mite,south,,,Ceratozetes.gracilis,insample_auc,5,0.883740175681923,0.875951595662976,0.884218489485534,0.880842240129472,0.881127727799286,0.00491960965959818 -mite,mite,south,,,Ceratozetes.gracilis,insample_deviance_explained,5,0.169227984866749,0.102917912757133,0.174897444771582,0.169227984866749,0.148837676671015,0.0479777276568308 -mite,mite,south,,,Ceratozetes.gracilis,insample_rmse,5,0.223410917578014,0.207894263041054,0.228617168412238,0.215105469199925,0.219622699857429,0.0107678160117743 -mite,mite,south,,,Ceratozetes.gracilis,insample_spearman,5,0.304054710362117,0.292604158893579,0.321411532274628,0.304054710362117,0.306352068526036,0.0145523795554875 -mite,mite,south,,,Ceratozetes.gracilis,insample_calibration_slope,5,0.646501812554423,0.571714943118018,0.663896293625869,0.652084939529121,0.625798242702713,0.0510970524920574 -mite,mite,south,,,Ceratozetes.gracilis,insample_prevalence,5,0.056970509383378,0.0521775638545351,0.0622115928022082,0.0562843842573,0.0572190090351997,0.00535467847864499 -mite,mite,south,,,Ceratozetes.gracilis,insample_n,5,1494,1479.4,2024.6,2363,1667.4,389.193139713433 -mite,mite,south,,,Ceratozetes.gracilis,oob_auc,4,0.877556363090999,0.870858501486971,0.891246533596325,,0.880053616270034,0.0119804912573777 -mite,mite,south,,,Ceratozetes.gracilis,oob_deviance_explained,4,0.149139947228324,0.081863654137057,0.211545016984438,,0.147400224608626,0.0705190613624988 -mite,mite,south,,,Ceratozetes.gracilis,oob_rmse,4,0.217549055983636,0.21158190570823,0.223701160718158,,0.217615111147606,0.00687714178519329 -mite,mite,south,,,Ceratozetes.gracilis,oob_spearman,4,0.297912570168464,0.269110530526911,0.325939210959734,,0.297635642007648,0.0304788257744718 -mite,mite,south,,,Ceratozetes.gracilis,oob_calibration_slope,4,0.588033894967732,0.50519914194533,0.720419749435623,,0.60573071691255,0.11934507589046 -mite,mite,south,,,Ceratozetes.gracilis,oob_prevalence,4,0.0533392883804503,0.0452752248602848,0.0645232647455575,,0.0544535429679295,0.0107814199736608 -mite,mite,south,,,Ceratozetes.gracilis,oob_n,5,869,338.4,883.6,0,695.6,389.193139713433 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Climate,5,0.738382414749567,0.734358129806975,0.742005285315151,0.738382414749567,0.738111987253943,0.00384260421914782 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Climate_Truncated,5,0.738392463572007,0.734342356311168,0.742026178178654,0.738392463572007,0.738117914905037,0.00385983439540224 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Landcover,5,0.722020131552721,0.71607655717679,0.728899344516339,0.719697225125594,0.722583698825812,0.00643427629050986 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Full,5,0.883740175681923,0.875951595662976,0.884218489485534,0.880842240129472,0.881127727799286,0.00491960965959818 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Truncated,5,0.883740175681923,0.875951595662976,0.884218489485534,0.880842240129472,0.881127727799286,0.00491960965959818 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Joint,5,0.883869625520111,0.877386169471364,0.884867266298163,0.880966991469706,0.88186690451822,0.00416238011000395 -mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Joint_Truncated,5,0.883869625520111,0.877386169471364,0.884867266298163,0.880966991469706,0.88186690451822,0.00416238011000395 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Climate,4,0.731027419469463,0.725410991997312,0.741834431700471,,0.732881199740483,0.00906851156052711 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Climate_Truncated,4,0.731045119285728,0.72540173801145,0.741842884282973,,0.732885970615359,0.00907305785634944 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Landcover,4,0.704830138651714,0.697578522816295,0.713165675388293,,0.705217253259271,0.00876901015163448 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full,4,0.877556363090999,0.870858501486971,0.891246533596325,,0.880053616270034,0.0119804912573777 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Truncated,4,0.877556363090999,0.870858501486971,0.891281973045494,,0.880066273216166,0.0120040417679418 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Joint,4,0.87838605738981,0.870791888918913,0.892459363692493,,0.880700035186876,0.0128370905847578 -mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Joint_Truncated,4,0.87838605738981,0.870791888918913,0.892494803141663,,0.880712692133008,0.012860350145155 -mite,mite,south,,,Trhypochthonius.tectorum,insample_auc,5,0.714545787058589,0.69969622945697,0.724109648011322,0.705313075635924,0.712537633834069,0.0121603195766141 -mite,mite,south,,,Trhypochthonius.tectorum,insample_deviance_explained,5,-2.20551740843788e-05,-0.00644243886806564,0.0163984110082346,0.01492775208855,0.00397390748081414,0.0114643898167834 -mite,mite,south,,,Trhypochthonius.tectorum,insample_rmse,5,0.269858367078513,0.266406986696229,0.272808873150662,0.270464873051431,0.269513931566532,0.00330133552867803 -mite,mite,south,,,Trhypochthonius.tectorum,insample_spearman,5,0.210611679646456,0.189085620295154,0.213764285932634,0.196610759018781,0.203586560421865,0.0130220945300142 -mite,mite,south,,,Trhypochthonius.tectorum,insample_calibration_slope,5,0.964366086336983,0.916309849664698,0.989356334697425,0.964366086336983,0.955309012900657,0.0368054765299321 -mite,mite,south,,,Trhypochthonius.tectorum,insample_prevalence,5,0.0833685992382565,0.0807473443243282,0.0863035095821866,0.0833685992382565,0.083401335320589,0.00299510185415199 -mite,mite,south,,,Trhypochthonius.tectorum,insample_n,5,1489,1484.4,2017.4,2363,1664.2,390.68875079787 -mite,mite,south,,,Trhypochthonius.tectorum,oob_auc,4,0.669707753515078,0.654014549095664,0.683226886999099,,0.66893129960958,0.0157013541907933 -mite,mite,south,,,Trhypochthonius.tectorum,oob_deviance_explained,4,0.0238861350837344,-0.00501344344448882,0.0319775842734965,,0.0164546603199983,0.0222551548342608 -mite,mite,south,,,Trhypochthonius.tectorum,oob_rmse,4,0.275344693909917,0.2660800590245,0.279902566485838,,0.273663707370811,0.00770431969533571 -mite,mite,south,,,Trhypochthonius.tectorum,oob_spearman,4,0.16338068295489,0.142721241028181,0.180002438567577,,0.161938652128453,0.0200563721519488 -mite,mite,south,,,Trhypochthonius.tectorum,oob_calibration_slope,4,0.640530845430618,0.577798461860074,0.822553046730012,,0.68313435176235,0.143050298074835 -mite,mite,south,,,Trhypochthonius.tectorum,oob_prevalence,4,0.0842873358196854,0.0775201528145626,0.0881856815952926,,0.0832627510948584,0.00595703320150957 -mite,mite,south,,,Trhypochthonius.tectorum,oob_n,5,874,345.6,878.6,0,698.8,390.68875079787 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Climate,5,0.646091585413555,0.643946189711462,0.652343816700896,0.646091585413555,0.647435005669506,0.00501081050104212 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Climate_Truncated,5,0.646095557008706,0.643948358640746,0.65233771826661,0.646095557008706,0.647436539502018,0.00500120525659027 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Landcover,5,0.671864124042916,0.659898184775652,0.684374697179488,0.660231262098608,0.671375041215641,0.0130121969567772 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full,5,0.714545787058589,0.69969622945697,0.724109648011322,0.705313075635924,0.712537633834069,0.0121603195766141 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Truncated,5,0.714545787058589,0.69969622945697,0.724109648011322,0.705313075635924,0.712537633834069,0.0121603195766141 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Joint,5,0.714906009620713,0.700143210072346,0.72490193539616,0.705786473932628,0.713089166909465,0.012325737475379 -mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Joint_Truncated,5,0.714906009620713,0.700143210072346,0.72490193539616,0.705786473932628,0.713089166909465,0.012325737475379 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Climate,4,0.637448091750764,0.62319195321542,0.64083947116042,,0.633567820634447,0.0109633746747622 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Climate_Truncated,4,0.637447116712891,0.623191511787853,0.640852747518307,,0.633572125955883,0.0109617111390789 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Landcover,4,0.613895073569526,0.611766319340838,0.647057552774624,,0.624978546775387,0.0240120090979382 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full,4,0.669707753515078,0.654014549095664,0.683226886999099,,0.66893129960958,0.0157013541907933 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Truncated,4,0.669707753515078,0.654014549095664,0.683226886999099,,0.66893129960958,0.0157013541907933 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint,4,0.670252865183779,0.654581402849557,0.683544630202293,,0.669402973285312,0.0155825833517288 -mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint_Truncated,4,0.670252865183779,0.654581402849557,0.683544630202293,,0.669402973285312,0.0155825833517288 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_auc,5,0.830322798090827,0.829752014715758,0.833521610487142,0.830322798090827,0.831256480687861,0.00210224952478856 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_deviance_explained,5,0.169049735433044,0.156535489819263,0.180380243811949,0.172184312829234,0.16845440325201,0.01233664255535 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_rmse,5,0.406331801158912,0.404646760463192,0.406711203597052,0.406706951792596,0.405904427434075,0.00126412825140784 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_spearman,5,0.564448272444098,0.564022722895439,0.568538539772008,0.564448272444098,0.565752949420103,0.002625462296498 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_calibration_slope,5,0.979847210350883,0.969126982244339,0.991954887525608,0.979847210350883,0.980520168665477,0.0114519899974685 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_prevalence,5,0.418242653476869,0.411391418988775,0.421189975169674,0.418242653476869,0.416870814782784,0.00501851999449775 -vascular_plant,vascular_plant,north,,,Galium.boreale,insample_n,5,4366,4320.2,5874.4,6874,4851.6,1130.83522230252 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_auc,4,0.825970385744679,0.820899166013025,0.829858683383589,,0.825547913568699,0.00483682169731863 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_deviance_explained,4,0.180338934815369,0.153363367618616,0.193673751289778,,0.175467238128817,0.0239800671027935 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_rmse,4,0.409024585589369,0.407545829323972,0.412796643199926,,0.409843621784069,0.00304952623195646 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_spearman,4,0.556036446141893,0.549781718602555,0.564239538039467,,0.556732290555549,0.00779665231289283 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_calibration_slope,4,0.961989811631539,0.953282864779601,0.97698898933143,,0.964237036934379,0.0130331463165358 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_prevalence,4,0.419241311741466,0.413108455574493,0.430771977433407,,0.421169100857526,0.00978800188867454 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_n,5,2508,999.6,2553.8,0,2022.4,1130.83522230252 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Climate,5,0.688882537608652,0.686220497467121,0.693315342224415,0.691923775211569,0.689606019273988,0.00355153250685828 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Climate_Truncated,5,0.688853782361867,0.686211230349888,0.693311107621612,0.691928871889894,0.689595671925047,0.00355473297057612 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Landcover,5,0.806658535413912,0.804749026795703,0.81034804923884,0.804887352272851,0.807185726647177,0.00308448997445622 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full,5,0.830322798090827,0.829752014715758,0.833521610487142,0.830322798090827,0.831256480687861,0.00210224952478856 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Truncated,5,0.830433260489035,0.829860825639713,0.833584571804586,0.830433260489035,0.83134635595991,0.00208467504714064 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Joint,5,0.82780564706394,0.827522559630011,0.831849313017971,0.82780564706394,0.829181386915621,0.00243189954325233 -vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Joint_Truncated,5,0.827924459375713,0.827636541171172,0.831943133083281,0.827924459375713,0.829288457143518,0.0024223441955198 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Climate,4,0.69847723797285,0.691752649872066,0.699715919161363,,0.696517985504182,0.00490694367651728 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Climate_Truncated,4,0.698467309951771,0.691745994349179,0.699715497383917,,0.696512621319469,0.0049068149193327 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Landcover,4,0.798538423391199,0.793813753185317,0.801044488836154,,0.797746064548011,0.0039851186104012 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full,4,0.825970385744679,0.820899166013025,0.829858683383589,,0.825547913568699,0.00483682169731863 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Truncated,4,0.826084368160094,0.821025133464921,0.829955751376353,,0.825660135489053,0.00481955559769384 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Joint,4,0.822407455245542,0.816503165651276,0.825556259025818,,0.821423353169117,0.00501007923907512 -vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Joint_Truncated,4,0.822548387109745,0.816621603632805,0.825661726608092,,0.821543585688819,0.00501141542481554 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_auc,5,0.836315133959189,0.831991084674704,0.837528607951877,0.834425701496386,0.835217103556636,0.00298930683727749 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_deviance_explained,5,0.154953219466334,0.129409063699085,0.172774430677382,0.160280734393984,0.151845840183807,0.0222292641700649 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_rmse,5,0.397835953480652,0.39520050591856,0.39953977885822,0.397892542228527,0.397399168674453,0.00225088132355584 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_spearman,5,0.565718307196976,0.558075214292711,0.566158340164243,0.561646901356684,0.563051440283389,0.00452676813056749 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_calibration_slope,5,1.00378490707536,0.996670213069317,1.00931321625889,1.00546871573532,1.00306243102853,0.00640638209817766 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_prevalence,5,0.377654931626418,0.37492184315556,0.38072781584232,0.377654931626418,0.377957278345016,0.00308047552556824 -vascular_plant,vascular_plant,north,,,Vicia.americana,insample_n,5,4329,4315.8,5874,6874,4842.2,1136.06104589498 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_auc,4,0.829938952959948,0.828125419425383,0.835304874971869,,0.831207663130432,0.00415809140956838 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_deviance_explained,4,0.177626825486026,0.135153586377154,0.21154877519812,,0.174572793558605,0.0427317407176602 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_rmse,4,0.400006137187779,0.39713029702198,0.40231573999719,,0.399803909560497,0.0030220247869821 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_spearman,4,0.554463344935879,0.551184680243305,0.562068414950895,,0.556008489693894,0.00617058608931537 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_calibration_slope,4,0.988524116774644,0.97389136931948,1.00993315311349,,0.990944219947388,0.0195740205696745 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_prevalence,4,0.375247544204322,0.372430611979277,0.382966913772923,,0.376998414684163,0.00599903919350225 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_n,5,2545,1000,2558.2,0,2031.8,1136.06104589498 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Climate,5,0.688388374288585,0.686629323150551,0.697141250977293,0.688388374288585,0.69087203080297,0.00615433602729216 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Climate_Truncated,5,0.688377053340582,0.686621028690138,0.697132635984666,0.688377053340582,0.690862704228311,0.00615461616566359 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Landcover,5,0.812599770966484,0.806923106797722,0.814411627611935,0.809938249660894,0.811141578894183,0.00400693028240299 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full,5,0.836315133959189,0.831991084674704,0.837528607951877,0.834425701496386,0.835217103556636,0.00298930683727749 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Truncated,5,0.836225603913632,0.831944005617998,0.837453646171789,0.834353666337466,0.835150674964538,0.0029708276538074 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Joint,5,0.836242738307649,0.831840647476923,0.837075962254889,0.833795663987679,0.834913342412997,0.00279108797567405 -vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Joint_Truncated,5,0.836167732781523,0.831822036390158,0.836995692851111,0.833746590035665,0.834858253988271,0.00275653331501612 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Climate,4,0.687058088763642,0.673058403439112,0.691946304395709,,0.683803992444905,0.0115178096712181 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Climate_Truncated,4,0.687038471404578,0.673051662415016,0.691940326726772,,0.683793845094804,0.0115133321710675 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Landcover,4,0.807847376592108,0.801759141298583,0.811699920923116,,0.807048915534066,0.00558077270332568 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full,4,0.829938952959948,0.828125419425383,0.835304874971869,,0.831207663130432,0.00415809140956838 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Truncated,4,0.829888329553378,0.828175765215782,0.835181080251946,,0.831166967539439,0.00409066773151742 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Joint,4,0.828971535109331,0.826291764196716,0.83479597749998,,0.830094632065772,0.00475621189002634 -vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Joint_Truncated,4,0.828915617285276,0.826336395712055,0.834689140179746,,0.830056439185722,0.00469352433889885 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_auc,5,0.890081979393699,0.886120541286867,0.900531693288428,0.890081979393699,0.8925816929913,0.0074671519015807 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_deviance_explained,5,0.376511843709018,0.359648245967408,0.39273006526476,0.36183949121173,0.375558492410363,0.0170745413457127 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_rmse,5,0.308360864442848,0.306833389069796,0.315704381717812,0.312233283277407,0.31046772667452,0.00475923236811526 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_spearman,5,0.561632279820523,0.56034731464871,0.575734647134824,0.561632279820523,0.565885670838601,0.0104854350954813 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_calibration_slope,5,0.980281716931255,0.970651842047086,0.998280590750127,0.982887664309838,0.982912614118871,0.0154729818019227 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_prevalence,5,0.222088835534214,0.217190546592102,0.228625506806496,0.222054380664653,0.222881775063893,0.00607679419012681 -vascular_plant,vascular_plant,south,,,Galium.boreale,insample_n,5,1692,1666,2267.2,2648,1873.6,433.131388841769 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_auc,4,0.884065848019888,0.870449780280702,0.894068384737495,,0.882775301226467,0.0128406847119162 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_deviance_explained,4,0.334099694985671,0.299899048318077,0.344909076796622,,0.325745671822584,0.0279649666452476 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_rmse,4,0.322280229393816,0.311448708149722,0.324570568538386,,0.319229807215414,0.0080667999016699 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_spearman,4,0.558011118128369,0.532461517776284,0.559103143514103,,0.549276269926101,0.0182973871982467 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_calibration_slope,4,0.947730194323529,0.912734464703454,0.971381900858514,,0.943678757507426,0.0317919329981155 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_prevalence,4,0.218666030567013,0.210018355611084,0.23207994955219,,0.220368260577459,0.0121728164316861 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_n,5,956,380.8,982,0,774.4,433.131388841769 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Climate,5,0.688882537608652,0.686220497467121,0.693315342224415,0.691923775211569,0.689606019273988,0.00355153250685828 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Climate_Truncated,5,0.688853782361867,0.686211230349888,0.693311107621612,0.691928871889894,0.689595671925047,0.00355473297057612 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Landcover,5,0.795978634172116,0.790420342908561,0.808241109353126,0.795978634172116,0.79826909072766,0.00925670982213445 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full,5,0.890081979393699,0.886120541286867,0.900531693288428,0.890081979393699,0.8925816929913,0.0074671519015807 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Truncated,5,0.890081979393699,0.886107519131847,0.900531693288428,0.890081979393699,0.892577213245043,0.00747321026543204 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Joint,5,0.885428136469803,0.879749497228007,0.894203850953663,0.88338493164256,0.886730028942607,0.00724717960067507 -vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Joint_Truncated,5,0.885423965632299,0.87972024605796,0.894203850953663,0.88338493164256,0.886719444385091,0.00726319634118945 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Climate,4,0.69847723797285,0.691752649872066,0.699715919161363,,0.696517985504182,0.00490694367651728 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Climate_Truncated,4,0.698467309951771,0.691745994349179,0.699715497383917,,0.696512621319469,0.0049068149193327 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Landcover,4,0.785174421252252,0.769559195023864,0.799812878397794,,0.784825575151236,0.016225503840661 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full,4,0.884065848019888,0.870449780280702,0.894068384737495,,0.882775301226467,0.0128406847119162 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Truncated,4,0.884061344921756,0.870449780280702,0.894063477626334,,0.882772262087301,0.0128382393423392 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Joint,4,0.873729773605152,0.862934967954651,0.88650495339372,,0.874437050083033,0.0129679425986572 -vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Joint_Truncated,4,0.873725270507021,0.862934967954651,0.886486814768876,,0.874429285403265,0.0129581962884508 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_auc,5,0.805930865573238,0.802524114144756,0.807930971919586,0.808012980346143,0.805492289441972,0.00279684596223116 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_deviance_explained,5,0.166618669672263,0.15835736048416,0.197983766968233,0.179903957587885,0.174785331031235,0.0215605448558036 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_rmse,5,0.381878187765555,0.378497935845721,0.383275373980955,0.380313032587985,0.381159180017538,0.00249488775218777 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_spearman,5,0.465238638302507,0.460583361067045,0.473614426763325,0.470529100145484,0.466694650560087,0.00654368164273618 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_calibration_slope,5,0.933688472158773,0.920475046205582,0.947214542702693,0.933688472158773,0.933156328591101,0.0138732265313946 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_prevalence,5,0.264350453172205,0.25911663216011,0.270295509723619,0.264350453172205,0.264443478235907,0.00620048832939598 -vascular_plant,vascular_plant,south,,,Vicia.americana,insample_n,5,1685,1649.4,2266.4,2648,1865.6,437.838212128635 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_auc,4,0.807298000134658,0.803023991535991,0.814183808910683,,0.808230785912286,0.0060785023634324 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_deviance_explained,4,0.201855986026952,0.138430007183509,0.206184030963771,,0.180749581060301,0.0455406997595895 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_rmse,4,0.37987633843542,0.378039277925496,0.38526074563498,,0.381143247967433,0.00422553209428043 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_spearman,4,0.471049244528984,0.458945127185501,0.481459447588745,,0.47044427514194,0.0124124270312768 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_calibration_slope,4,0.934673431866213,0.911850976434992,0.962640657947191,,0.936510849955412,0.0273611637238912 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_prevalence,4,0.266148052343275,0.252246321440467,0.273763588267456,,0.263902982708051,0.0122396324927964 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_n,5,963,381.6,998.6,0,782.4,437.838212128635 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Climate,5,0.688388374288585,0.686629323150551,0.697141250977293,0.688388374288585,0.69087203080297,0.00615433602729216 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Climate_Truncated,5,0.688377053340582,0.686621028690138,0.697132635984666,0.688377053340582,0.690862704228311,0.00615461616566359 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Landcover,5,0.761379244969105,0.759537679717784,0.765001614229777,0.76658587562335,0.762041460585166,0.00296099903341381 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full,5,0.805930865573238,0.802524114144756,0.807930971919586,0.808012980346143,0.805492289441972,0.00279684596223116 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Truncated,5,0.805930865573238,0.802524057680271,0.807932999886811,0.808015180404811,0.805493243742915,0.0027981951952029 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Joint,5,0.802576290466739,0.799474271873651,0.804841725613092,0.804804561454972,0.802383816798592,0.00280990996220882 -vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Joint_Truncated,5,0.802576290466739,0.799476478074435,0.804843080852285,0.804805294807862,0.802385231980135,0.00280955135311763 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Climate,4,0.687058088763642,0.673058403439112,0.691946304395709,,0.683803992444905,0.0115178096712181 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Climate_Truncated,4,0.687038471404578,0.673051662415016,0.691940326726772,,0.683793845094804,0.0115133321710675 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Landcover,4,0.774223898160634,0.769748999911181,0.777668369854279,,0.773855888676417,0.00434521003225348 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full,4,0.807298000134658,0.803023991535991,0.814183808910683,,0.808230785912286,0.0060785023634324 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Truncated,4,0.807292347351227,0.803023991535991,0.814176792476235,,0.808226664961859,0.00607512490581962 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Joint,4,0.805961431482898,0.801581678357063,0.812743710082227,,0.80681947629486,0.00606828197945081 -vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Joint_Truncated,4,0.805961431482898,0.801581678357063,0.812736460553446,,0.806816887177438,0.00606401787708264 +bird,bird,north,,,AMRO,insample_auc,100,0.722941291958026,0.720972868858002,0.725025884727729,0.721701661835893,0.723085981741391,0.00159862176870483 +bird,bird,north,,,AMRO,insample_deviance_explained,100,0.141892228737756,0.139516850461149,0.144440700348185,0.140587647159979,0.141864000496307,0.00213335545451356 +bird,bird,north,,,AMRO,insample_rmse,100,0.663529568645484,0.659762946701523,0.667800183229973,0.664239276180889,0.663623875594218,0.00298218908606892 +bird,bird,north,,,AMRO,insample_spearman,100,0.341332033991246,0.337958860752305,0.344541559969754,0.339249301212572,0.341409137892933,0.00265905464154251 +bird,bird,north,,,AMRO,insample_calibration_slope,100,0.80439129216793,0.794598673414551,0.813263646692552,0.80440117768677,0.804123281503184,0.0079530494267653 +bird,bird,north,,,AMRO,insample_prevalence,100,0.251013357719858,0.249469515535677,0.252466035822628,0.250861017819325,0.25108872356286,0.00118707287869132 +bird,bird,north,,,AMRO,insample_n,100,46751,46746.9,46756.1,46747,46751,3.78993883375924 +bird,bird,north,,,AMRO,oob_auc,100,0.731083020235213,0.729728694406019,0.731997269207461,0.730766733254682,0.730986081243057,0.000908359570086865 +bird,bird,north,,,AMRO,oob_deviance_explained,100,0.152102139021978,0.150344464224191,0.153768435297582,0.152754178062373,0.152091780919406,0.00134792069522161 +bird,bird,north,,,AMRO,oob_rmse,100,0.65796553610531,0.656284605026556,0.659354479236559,0.657851304309638,0.65782000017315,0.00116881295923829 +bird,bird,north,,,AMRO,oob_spearman,100,0.349000795818394,0.346958699831137,0.350450615002725,0.348509330988823,0.348815204256692,0.00139035859306659 +bird,bird,north,,,AMRO,oob_calibration_slope,100,0.87705334102173,0.859046659953532,0.892405134838974,0.881696624797909,0.87751046555755,0.0149020783282065 +bird,bird,north,,,AMRO,oob_prevalence,100,0.241188364632105,0.240643779705197,0.241766126792771,0.241245385459292,0.241159815114446,0.000444506293692727 +bird,bird,north,,,AMRO,oob_n,100,124873,124867.9,124877.1,124877,124873,3.78993883375924 +bird,bird,north,,,YEWA,insample_auc,100,0.778186953289465,0.775689125540707,0.78064354760127,0.779841092447633,0.77805487098833,0.00188210113749818 +bird,bird,north,,,YEWA,insample_deviance_explained,100,0.25902142141057,0.254928440560819,0.26248816234098,0.259141214360432,0.258911857037657,0.00304235268738587 +bird,bird,north,,,YEWA,insample_rmse,100,0.551892225105279,0.544039433841324,0.560242541149428,0.547158394049375,0.552103469204558,0.00668696068064398 +bird,bird,north,,,YEWA,insample_spearman,100,0.315129544166726,0.312069108270516,0.318157185925632,0.316093683296469,0.315009972669583,0.00233705744860745 +bird,bird,north,,,YEWA,insample_calibration_slope,100,0.68667256345246,0.65127717317625,0.716419429614271,0.716264166431109,0.683566021623221,0.0295455411861364 +bird,bird,north,,,YEWA,insample_prevalence,100,0.119004833940844,0.118139055614803,0.119814101354467,0.118296361263824,0.119000448754605,0.000692084147598695 +bird,bird,north,,,YEWA,insample_n,100,46751,46746.9,46756.1,46747,46751,3.78993883375924 +bird,bird,north,,,YEWA,oob_auc,100,0.728919378934302,0.727561350140747,0.730408468931927,0.730809600284142,0.728955841331318,0.00111613259810698 +bird,bird,north,,,YEWA,oob_deviance_explained,100,0.179057138830537,0.175210549900854,0.181998524533593,0.183210182399369,0.178753956511187,0.00256070732027727 +bird,bird,north,,,YEWA,oob_rmse,100,0.591993296525432,0.582825632432554,0.603629490711002,0.581496589737255,0.592056362893991,0.00752518180585302 +bird,bird,north,,,YEWA,oob_spearman,100,0.273840417323665,0.272323641876612,0.27551058043422,0.276382265893519,0.273849795845443,0.00130352548099262 +bird,bird,north,,,YEWA,oob_calibration_slope,100,0.64415917079899,0.561997241434001,0.704587672561171,0.718728425403305,0.642124440641027,0.0497313219318071 +bird,bird,north,,,YEWA,oob_prevalence,100,0.134323099251165,0.134021369904622,0.134647493509128,0.13458843502006,0.134325354513425,0.000259103894671904 +bird,bird,north,,,YEWA,oob_n,100,124873,124867.9,124877.1,124877,124873,3.78993883375924 +bird,bird,south,,,AMRO,insample_auc,100,0.692241105195695,0.689277087417165,0.695254459353952,0.689537506786954,0.692225526292726,0.00227868762568413 +bird,bird,south,,,AMRO,insample_deviance_explained,100,0.0922921788656006,0.0899257972801956,0.0959833319452778,0.0905093060629211,0.0924531575055226,0.0026152241649658 +bird,bird,south,,,AMRO,insample_rmse,100,0.742969543166091,0.737049963427855,0.748369656814777,0.746104469516561,0.743204439600394,0.0045569877160048 +bird,bird,south,,,AMRO,insample_spearman,100,0.292644243026994,0.288035146020249,0.296748860514725,0.287696121760142,0.292596107741881,0.00342151048186502 +bird,bird,south,,,AMRO,insample_calibration_slope,100,0.891418274449085,0.875752221574822,0.907045276999385,0.885403476414633,0.891212384304908,0.0113044783428822 +bird,bird,south,,,AMRO,insample_prevalence,100,0.257858442272708,0.255935560656765,0.259915379733446,0.25655668358714,0.25801686220114,0.00161733451562579 +bird,bird,south,,,AMRO,insample_n,100,23638,23635,23641,23640,23638.26,2.22302005879798 +bird,bird,south,,,AMRO,oob_auc,100,0.689119265153378,0.68765134183379,0.690180541905298,0.689591934626615,0.688996112047988,0.00107146692909811 +bird,bird,south,,,AMRO,oob_deviance_explained,100,0.0970655203501608,0.0907384885890809,0.0989923781381314,0.0984328670162571,0.0956746169488123,0.0033245467361416 +bird,bird,south,,,AMRO,oob_rmse,100,0.735441343525441,0.733487115915094,0.737659872237311,0.734395013830007,0.735505485744179,0.00172234151456847 +bird,bird,south,,,AMRO,oob_spearman,100,0.290675252027123,0.288615904926869,0.292588132435043,0.291376773818019,0.290683801481401,0.00158706903425699 +bird,bird,south,,,AMRO,oob_calibration_slope,100,0.926837573631262,0.897339361283655,0.960759916528504,0.953623540744284,0.92786893795637,0.0245068004108913 +bird,bird,south,,,AMRO,oob_prevalence,100,0.26025011165699,0.25952629071637,0.260926785729864,0.260708383581223,0.260194398243477,0.000569171309266087 +bird,bird,south,,,AMRO,oob_n,100,67169,67166,67172,67167,67168.74,2.22302005879798 +bird,bird,south,,,YEWA,insample_auc,100,0.71931881761428,0.715530606727552,0.722950865983364,0.721262730392428,0.719086273750599,0.00287181316017475 +bird,bird,south,,,YEWA,insample_deviance_explained,100,0.23129680597227,0.226310074573946,0.235915323956573,0.229114411717017,0.23161493328492,0.00412679045551683 +bird,bird,south,,,YEWA,insample_rmse,100,0.626430819488391,0.620643891953174,0.63211456133757,0.629305991109963,0.626157899729115,0.00451494675518251 +bird,bird,south,,,YEWA,insample_spearman,100,0.29573200936581,0.290701723813243,0.300697611022088,0.297439751075024,0.295700447359219,0.00374960958811592 +bird,bird,south,,,YEWA,insample_calibration_slope,100,0.866682086841971,0.860362489808398,0.873353081017801,0.860619291916303,0.866784408730564,0.00505186260931395 +bird,bird,south,,,YEWA,insample_prevalence,100,0.172480169299808,0.171161682117149,0.173982762791556,0.171742808798646,0.172510175005201,0.00119540989613989 +bird,bird,south,,,YEWA,insample_n,100,23638,23635,23641,23640,23638.26,2.22302005879798 +bird,bird,south,,,YEWA,oob_auc,100,0.715167591737123,0.71286824374569,0.716852012704592,0.716561203894474,0.714899804827379,0.00154087167671903 +bird,bird,south,,,YEWA,oob_deviance_explained,100,0.200176382933312,0.196725767352594,0.206420626511906,0.208119807948008,0.200906037239108,0.00371162165876558 +bird,bird,south,,,YEWA,oob_rmse,100,0.638166771124373,0.636266196981271,0.640144594296377,0.636772974666958,0.638242748456524,0.00172610617856039 +bird,bird,south,,,YEWA,oob_spearman,100,0.291825737345894,0.288897993957802,0.294289916161369,0.294073915420202,0.291553722417915,0.00204151614652892 +bird,bird,south,,,YEWA,oob_calibration_slope,100,0.857604141687727,0.843443165747965,0.875941675070625,0.871741212363925,0.858478942166151,0.0145774876088105 +bird,bird,south,,,YEWA,oob_prevalence,100,0.17548143131411,0.17495262154107,0.175945404105742,0.175741063319785,0.175470912960736,0.000420708531319446 +bird,bird,south,,,YEWA,oob_n,100,67169,67166,67172,67167,67168.74,2.22302005879798 +bryophyte,bryophyte,north,,,Bryum.All,insample_auc,100,0.639513842289103,0.630384469487024,0.648716294484894,0.638127846001886,0.639806095664619,0.0071192885714344 +bryophyte,bryophyte,north,,,Bryum.All,insample_deviance_explained,100,-0.243654346851002,-0.285082752189519,-0.186250953571412,-0.24424818155784,-0.239271989943423,0.0362182582218175 +bryophyte,bryophyte,north,,,Bryum.All,insample_rmse,100,0.478808798786959,0.475860348271298,0.481265850671372,0.479248548520264,0.478587522177541,0.0020281517368079 +bryophyte,bryophyte,north,,,Bryum.All,insample_spearman,100,0.236503412737569,0.221211992208403,0.252292116054916,0.234421074075063,0.237221375144725,0.0120544812833703 +bryophyte,bryophyte,north,,,Bryum.All,insample_calibration_slope,100,0.79932208605923,0.762439486602842,0.839852392809634,0.800400269549026,0.800501568214284,0.0308266974194748 +bryophyte,bryophyte,north,,,Bryum.All,insample_prevalence,100,0.399349043162305,0.393690846676296,0.405271234894856,0.400041220115416,0.399694475254376,0.00482485437151544 +bryophyte,bryophyte,north,,,Bryum.All,insample_n,100,3072,3037,3101.1,4852,3089.55,179.568583729522 +bryophyte,bryophyte,north,,,Bryum.All,oob_auc,99,0.622515284380487,0.606966046632109,0.637941781112142,,0.622160714294301,0.0126953764575217 +bryophyte,bryophyte,north,,,Bryum.All,oob_deviance_explained,99,-0.259587892490615,-0.354175560520467,-0.185248207919819,,-0.263614839449203,0.0631608360021524 +bryophyte,bryophyte,north,,,Bryum.All,oob_rmse,99,0.483600424373765,0.478387229723254,0.488459499949074,,0.483460192077185,0.0037815855808862 +bryophyte,bryophyte,north,,,Bryum.All,oob_spearman,99,0.207297388707156,0.181461808050537,0.234021799084017,,0.207346116833417,0.0215843111588342 +bryophyte,bryophyte,north,,,Bryum.All,oob_calibration_slope,99,0.679066064775121,0.593742298786332,0.815638641412239,,0.694675148491042,0.0896209101642394 +bryophyte,bryophyte,north,,,Bryum.All,oob_prevalence,99,0.401248581157775,0.390844052298067,0.411007337376053,,0.40063385096374,0.00831606439643734 +bryophyte,bryophyte,north,,,Bryum.All,oob_n,100,1780,1750.9,1815,0,1762.45,179.568583729522 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Climate,100,0.564449154820466,0.554012171366573,0.570488080028572,0.563268568361301,0.563361771865452,0.00638610348817348 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Climate_Truncated,100,0.564434908994878,0.553999088676995,0.57047860242542,0.563263005953167,0.563354280093268,0.00638437580191137 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Landcover,100,0.591982008865627,0.583299565240258,0.602597071514015,0.59031873097319,0.592286226095287,0.0073824064107065 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Full,100,0.639513842289103,0.630384469487024,0.648716294484894,0.638127846001886,0.639806095664619,0.0071192885714344 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Truncated,100,0.63997798915985,0.63067647736737,0.650065196096129,0.639020549706553,0.640330035194323,0.00725761755115993 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Joint,100,0.638157016545815,0.628828304666193,0.647302051967581,0.63656986211763,0.638270361156652,0.00712462127971527 +bryophyte,bryophyte,north,,,Bryum.All,v2val_Full_Joint_Truncated,100,0.63900274875512,0.628781781025239,0.648591404080496,0.637500263262641,0.638822166219209,0.00727117089326638 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Climate,99,0.552916481913235,0.540226254499829,0.567241677635273,,0.553286503071197,0.0111835169013594 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Climate_Truncated,99,0.552925779182699,0.540226609429324,0.567255933484287,,0.553278488915483,0.0111855944624902 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Landcover,99,0.578478654378855,0.563340215848909,0.595416571811786,,0.579380151855839,0.0122156118980015 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full,99,0.622515284380487,0.606966046632109,0.637941781112142,,0.622160714294301,0.0126953764575217 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Truncated,99,0.623158079831194,0.607536063147181,0.638923145728668,,0.622657614849357,0.01281671370537 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Joint,99,0.620799473715077,0.605648460579975,0.636990572220664,,0.620830270700207,0.0126890796401061 +bryophyte,bryophyte,north,,,Bryum.All,oob_v2val_Full_Joint_Truncated,99,0.621996503907548,0.606257564993021,0.637854921013833,,0.621361560550091,0.0128157732264946 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_auc,100,0.697312704147698,0.689101809484888,0.706500159400666,0.694675016541229,0.697363544715949,0.0066463039079172 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_deviance_explained,100,-0.126583736354879,-0.164702497778378,-0.0911713776727783,-0.127187969172517,-0.125673342764407,0.0286136952944696 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_rmse,100,0.466701653397071,0.463656633159247,0.469591723246828,0.467432435043113,0.466651508630854,0.00230413109644779 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_spearman,100,0.339296635100821,0.324944687528118,0.355034580766474,0.334844748701068,0.339468638131794,0.0114034077367771 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_calibration_slope,100,0.892561915520689,0.867665880545868,0.91687886522596,0.897907532572089,0.89278108103261,0.0195522114786724 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_prevalence,100,0.441423922595881,0.434027652325691,0.448036090018821,0.441055234954658,0.441321190043275,0.00550036887512568 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_n,100,3065,3034.8,3098.1,4852,3083.68,180.313356872603 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_auc,99,0.680703511329967,0.668408531167835,0.695661297003528,,0.681855653080062,0.0105717706240223 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_deviance_explained,99,-0.136093758709005,-0.198845264739553,-0.0794392074337584,,-0.139592461321498,0.0480132968580289 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_rmse,99,0.471567788844971,0.466477513982133,0.476495133504514,,0.471601273298362,0.00414294196348713 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_spearman,99,0.310947230222411,0.288257216444181,0.336953141683749,,0.312700986009513,0.018160038718684 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_calibration_slope,99,0.833622743971915,0.765508044494437,0.906697824063625,,0.835723640964142,0.056110399609045 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_prevalence,99,0.440387906446092,0.428865082471199,0.453160994868052,,0.440591948010038,0.00954929827120406 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_n,100,1787,1753.9,1817.2,0,1768.32,180.313356872603 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Climate,100,0.653628249222615,0.646582072273794,0.660645471865441,0.652571065182321,0.653655439188677,0.0055021141364424 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Climate_Truncated,100,0.653631181256494,0.646567181729957,0.660656834468788,0.652577122144193,0.653662703071088,0.00550110094331631 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Landcover,100,0.628211583853316,0.619312449475028,0.637212297876016,0.626159436771152,0.628277032425678,0.00758410130236849 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full,100,0.697312704147698,0.689101809484888,0.706500159400666,0.694675016541229,0.697363544715949,0.0066463039079172 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Truncated,100,0.697442938749871,0.689332998208995,0.706642286722351,0.694914692057453,0.697518165282923,0.00663400335289437 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Joint,100,0.693548409915653,0.685028144012786,0.703341076889968,0.69133661745651,0.693949569711382,0.00672601473867084 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,v2val_Full_Joint_Truncated,100,0.693647343658095,0.685257034827932,0.703395393409226,0.69158473589171,0.694096592932596,0.00671103543161319 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Climate,99,0.646423397353534,0.635163324971908,0.658730585161026,,0.646549510642691,0.00913900673434607 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Climate_Truncated,99,0.646430101039444,0.635179589567065,0.658754818805508,,0.646557283731221,0.00913919148547201 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Landcover,99,0.616438734578608,0.601823118907835,0.630341259705069,,0.615645616873622,0.0123127617168158 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full,99,0.680703511329967,0.668408531167835,0.695661297003528,,0.681855653080062,0.0105717706240223 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Truncated,99,0.681193862566742,0.668549373133085,0.695968955838593,,0.68198608644608,0.0105854783243588 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Joint,99,0.677589700394554,0.664504947148201,0.693024309187494,,0.678724890155881,0.0107306648681044 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_v2val_Full_Joint_Truncated,99,0.677695162032219,0.664672623978323,0.693261314402482,,0.678846724405356,0.0107458298505508 +bryophyte,bryophyte,south,,,Bryum.All,insample_auc,100,0.633431695701558,0.621072760304728,0.644071139511728,0.631477859980203,0.6335102785734,0.00929565263744251 +bryophyte,bryophyte,south,,,Bryum.All,insample_deviance_explained,100,-0.0709684143108004,-0.103389060881849,-0.0290087176559976,-0.0659569204939741,-0.0681927292072494,0.0307769238652196 +bryophyte,bryophyte,south,,,Bryum.All,insample_rmse,100,0.472675311626576,0.469369068853272,0.475463883981342,0.473182584522988,0.472577898054655,0.00243868218800103 +bryophyte,bryophyte,south,,,Bryum.All,insample_spearman,100,0.223140064301495,0.202180801361246,0.241828814753193,0.21996433153061,0.22327715440615,0.0156741452111761 +bryophyte,bryophyte,south,,,Bryum.All,insample_calibration_slope,100,0.890553119675404,0.817736067096869,0.978059198934448,0.929039182089329,0.894601568977102,0.0601003999587266 +bryophyte,bryophyte,south,,,Bryum.All,insample_prevalence,100,0.37019021854078,0.360595240622412,0.379679386889781,0.370562770562771,0.370026059340774,0.00737507386315862 +bryophyte,bryophyte,south,,,Bryum.All,insample_n,100,1461,1441,1483.1,2310,1469.48,86.5891821456149 +bryophyte,bryophyte,south,,,Bryum.All,oob_auc,99,0.619011406844107,0.598240308408525,0.638566231844498,,0.617898348640931,0.0158226172336135 +bryophyte,bryophyte,south,,,Bryum.All,oob_deviance_explained,99,-0.0590041906678451,-0.133957923177398,-0.00801048345212048,,-0.0691978760324694,0.0524359299876305 +bryophyte,bryophyte,south,,,Bryum.All,oob_rmse,99,0.475987788330587,0.470932856626832,0.482632654085023,,0.476338411402303,0.00450435816508748 +bryophyte,bryophyte,south,,,Bryum.All,oob_spearman,99,0.199931058375439,0.165000437886721,0.232264674465417,,0.197278730118364,0.0265079977220117 +bryophyte,bryophyte,south,,,Bryum.All,oob_calibration_slope,99,0.789747512333824,0.624768319702488,0.965361349532077,,0.791204550528528,0.14231314032675 +bryophyte,bryophyte,south,,,Bryum.All,oob_prevalence,99,0.371203599550056,0.355314877874469,0.387708127053306,,0.371529356420389,0.012786200422401 +bryophyte,bryophyte,south,,,Bryum.All,oob_n,100,849,826.9,869,0,840.52,86.5891821456149 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Climate,100,0.564449154820466,0.554012171366573,0.570488080028572,0.563268568361301,0.563361771865452,0.00638610348817348 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Climate_Truncated,100,0.564434908994878,0.553999088676995,0.57047860242542,0.563263005953167,0.563354280093268,0.00638437580191137 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Landcover,100,0.604108905134766,0.590811249395407,0.614816041548742,0.604777025029246,0.603433075317708,0.0097925801119728 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Full,100,0.633431695701558,0.621072760304728,0.644071139511728,0.631477859980203,0.63351029806088,0.00929562459564643 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Truncated,100,0.633501295313286,0.621085499158231,0.644081810530497,0.631535708776305,0.633540756063036,0.00930085013806633 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Joint,100,0.633675239217769,0.621111812013989,0.644079463996898,0.630846343956086,0.633202386651032,0.009209752248962 +bryophyte,bryophyte,south,,,Bryum.All,v2val_Full_Joint_Truncated,100,0.633706694184747,0.621120911195063,0.644107658819543,0.630860002699611,0.633231657331619,0.00921553322028887 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Climate,99,0.552916481913235,0.540226254499829,0.567241677635273,,0.553286503071197,0.0111835169013594 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Climate_Truncated,99,0.552925779182699,0.540226609429324,0.567255933484287,,0.553278488915483,0.0111855944624902 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Landcover,99,0.591609023285703,0.5684817431571,0.613703223028674,,0.590545519079711,0.0174112778339685 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full,99,0.619011406844107,0.598240308408525,0.638566231844498,,0.617898316961625,0.0158226049251328 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Truncated,99,0.619011406844107,0.598240019402878,0.63877582946581,,0.617942496639531,0.0158267011967766 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Joint,99,0.618268164367979,0.598732723008374,0.639880025973981,,0.617546605115133,0.0158189560166582 +bryophyte,bryophyte,south,,,Bryum.All,oob_v2val_Full_Joint_Truncated,99,0.618268164367979,0.598668784662836,0.639894643627021,,0.617591732692102,0.0158220839308672 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_auc,100,0.717588984872617,0.707940136120907,0.729990413520888,0.717485896729522,0.718380999647508,0.00918991227715403 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_deviance_explained,100,0.0547113797208927,0.0233037653142884,0.0862295320524106,0.0552076565672067,0.0559290011006686,0.0241722092830879 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_rmse,100,0.40330564983302,0.397478172718185,0.409165433214201,0.403372277591519,0.403254988809865,0.0045260828560831 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_spearman,100,0.322717833659162,0.307606103573971,0.339279624433256,0.321683515420121,0.32297013722192,0.0135928800916037 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_calibration_slope,100,0.91382883315799,0.859224215658359,0.965666579413759,0.926240194199798,0.91138761084073,0.0426654251480783 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_prevalence,100,0.23977643361205,0.230206220419202,0.24915207746165,0.23982683982684,0.239916446255905,0.00713405567006193 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_n,100,1462,1439.9,1485.5,2310,1470.38,86.7389884723826 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_auc,99,0.70961611965701,0.685563349905508,0.730088189467665,,0.708778547303281,0.0168776810827265 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_deviance_explained,99,0.0470842300032979,-0.0182884871583363,0.0998380332504637,,0.0403653881188948,0.0450672743474703 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_rmse,99,0.406582819616677,0.395997711967608,0.417044109415202,,0.406655600870816,0.00836890672566899 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_spearman,99,0.310322964392118,0.275543139195621,0.33817848572456,,0.308488665293595,0.0246082758136928 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_calibration_slope,99,0.867522302391074,0.730939919979396,1.01487942841957,,0.866946516930686,0.116427646586155 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_prevalence,99,0.24,0.22333963288802,0.255865292031658,,0.239661978853052,0.0123710992661133 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_n,100,848,824.5,870.1,0,839.62,86.7389884723826 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Climate,100,0.653628249222615,0.646582072273794,0.660645471865441,0.652571065182321,0.653655439188677,0.0055021141364424 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Climate_Truncated,100,0.653631181256494,0.646567181729957,0.660656834468788,0.652577122144193,0.653662703071088,0.00550110094331631 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Landcover,100,0.632138458386798,0.620856342049895,0.64588084751364,0.630393575816386,0.6330920003372,0.0101998959563605 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full,100,0.717588984872617,0.707940136120907,0.729990413520888,0.717485896729522,0.718380999647508,0.00918991227715403 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Truncated,100,0.717588984872617,0.707940136120907,0.729990413520888,0.717485896729522,0.718380999647508,0.00918991227715403 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Joint,100,0.719214027389327,0.70812487919115,0.732006695871702,0.718564200718732,0.719479428239482,0.00945626800247343 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,v2val_Full_Joint_Truncated,100,0.719214027389327,0.70812487919115,0.732006695871702,0.718564200718732,0.719479428239482,0.00945626800247343 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Climate,99,0.646423397353534,0.635163324971908,0.658730585161026,,0.646549510642691,0.00913900673434607 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Climate_Truncated,99,0.646430101039444,0.635179589567065,0.658754818805508,,0.646557283731221,0.00913919148547201 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Landcover,99,0.624022482893451,0.601386928063719,0.645259704463817,,0.624225787289932,0.017746627507744 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full,99,0.70961611965701,0.685563349905508,0.730088189467665,,0.708778547303281,0.0168776810827265 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Truncated,99,0.70961611965701,0.685563349905508,0.730088189467665,,0.708778547303281,0.0168776810827265 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Joint,99,0.710644087069526,0.688159303290908,0.730668435774751,,0.709597466181074,0.0165734043543019 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_v2val_Full_Joint_Truncated,99,0.710644087069526,0.688159303290908,0.730668435774751,,0.709597466181074,0.0165734043543019 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_auc,100,0.776586031004036,0.769782653235173,0.781235452865446,0.776659932196605,0.776145946462337,0.00442534747035408 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_deviance_explained,100,0.126044673686138,0.102275425585044,0.147341371297045,0.126180029301491,0.125496742362065,0.0175473578537148 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_rmse,100,0.42982559105148,0.427611824891307,0.431969804917907,0.429796613403064,0.429747021729593,0.00187433815023265 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_spearman,100,0.466662579235107,0.455289515447273,0.474696290969343,0.466302441462258,0.465507327565165,0.00753773014491427 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_calibration_slope,100,1.01771699080071,1.00075134269648,1.03555069978443,1.02280943622485,1.01791606954151,0.0137419655083024 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_prevalence,100,0.384437187559081,0.380547590781089,0.390534077268186,0.384787472035794,0.385176413599833,0.00409185516764567 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_n,100,3676.5,3643.5,3708.1,5811,3697.98,214.895651445303 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_auc,99,0.769142363003573,0.760363798954931,0.781551514547456,,0.769870655272277,0.00860431158045704 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_deviance_explained,99,0.120343787796955,0.0842735291536213,0.159189253097764,,0.120649829279254,0.0304582880104799 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_rmse,99,0.431982972619817,0.42815395574437,0.436032320023237,,0.432045430699304,0.00329881596292352 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_spearman,99,0.453772836745677,0.439804588980091,0.474572000590658,,0.454661702033214,0.0146092160462439 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_calibration_slope,99,0.995958813420785,0.948766401444845,1.04979834660872,,0.997085071088016,0.0399583614075953 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_prevalence,99,0.38539741219963,0.374872643000928,0.392180977534085,,0.384118981262911,0.00709581761955854 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_n,100,2134.5,2102.9,2167.5,0,2113.02,214.895651445303 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Climate,100,0.7235281228999,0.717441862095723,0.729839575280893,0.723004804073768,0.723606294712794,0.00491769024295873 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Climate_Truncated,100,0.723538229483672,0.717445780953459,0.729849398789947,0.72301652132686,0.723616220141786,0.00491840065072631 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Landcover,100,0.709593137989017,0.701801434200798,0.71574025781388,0.710689730662897,0.7095526977924,0.00531385798584787 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full,100,0.776586031004036,0.769782653235173,0.781235452865446,0.776659932196605,0.776145946462337,0.00442534747035408 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Truncated,100,0.776419861818452,0.769668394570003,0.781498799112205,0.77651231594881,0.776084088040829,0.00445467642637767 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Joint,100,0.775847920853584,0.769071476627846,0.780273084489337,0.77578324180292,0.775359516954816,0.0044697853660786 +lichen,lichen,north,,,Cladonia.chlorophaea,v2val_Full_Joint_Truncated,100,0.775630433031142,0.768905297903972,0.78063749666941,0.775630371417491,0.775295464025926,0.00449715624296925 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Climate,99,0.720918773373224,0.712650560435026,0.728579673956133,,0.720254269990376,0.00684047252129173 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Climate_Truncated,99,0.720930740463725,0.712658541338133,0.728614575624258,,0.720262774360831,0.00684229369105224 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Landcover,99,0.707003638756629,0.694851661808356,0.720077223146866,,0.706875587770762,0.00930841696385426 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full,99,0.769142363003573,0.760363798954931,0.781551514547456,,0.769870655272277,0.00860431158045704 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Truncated,99,0.769375783962666,0.760288655670733,0.781582641288071,,0.769835924345408,0.00858098948315258 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Joint,99,0.768152331423773,0.759812672712765,0.780189734262456,,0.768997013255381,0.00864440073743674 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_v2val_Full_Joint_Truncated,99,0.768049343702181,0.759794968553464,0.780225490484061,,0.768961696471748,0.00862618387596052 +lichen,lichen,north,,,Physcia.adscendens,insample_auc,100,0.838564851497925,0.833625144582723,0.845039678547128,0.838268220834197,0.838860165193504,0.00428289618777393 +lichen,lichen,north,,,Physcia.adscendens,insample_deviance_explained,100,0.158510314078463,0.128921158505823,0.185046970958806,0.153309875432323,0.158733770069343,0.0225932306573093 +lichen,lichen,north,,,Physcia.adscendens,insample_rmse,100,0.39298055012474,0.389323574580923,0.396587989056322,0.393389135816662,0.393104557399834,0.00275887590793839 +lichen,lichen,north,,,Physcia.adscendens,insample_spearman,100,0.570581442046743,0.562491109001998,0.581512149947807,0.569949863531718,0.570980636464963,0.00738891948552974 +lichen,lichen,north,,,Physcia.adscendens,insample_calibration_slope,100,0.973261739308817,0.961884398601492,0.988760858640257,0.974581235728712,0.974509933308457,0.011417313933931 +lichen,lichen,north,,,Physcia.adscendens,insample_prevalence,100,0.384489533269728,0.377838704868109,0.390009815932809,0.384099122354156,0.384317673219895,0.0047397879995898 +lichen,lichen,north,,,Physcia.adscendens,insample_n,100,3672,3638.7,3709,5811,3693.16,215.702035411834 +lichen,lichen,north,,,Physcia.adscendens,oob_auc,99,0.834569321101047,0.825318195008198,0.843996747262564,,0.834250987111902,0.00749714874962014 +lichen,lichen,north,,,Physcia.adscendens,oob_deviance_explained,99,0.137573259881193,0.0874807466964159,0.182474929965193,,0.136185667739412,0.0387413304251562 +lichen,lichen,north,,,Physcia.adscendens,oob_rmse,99,0.39552376432821,0.389527943934495,0.402259031414903,,0.395975176509095,0.00490230656640598 +lichen,lichen,north,,,Physcia.adscendens,oob_spearman,99,0.56406602891501,0.547544646296645,0.576897242445998,,0.56300094827173,0.0129811482155201 +lichen,lichen,north,,,Physcia.adscendens,oob_calibration_slope,99,0.963851829015386,0.922822731146916,0.99881162213613,,0.962372972089362,0.0312594414243677 +lichen,lichen,north,,,Physcia.adscendens,oob_prevalence,99,0.383356708742403,0.373863819973773,0.394833611223034,,0.383735741049292,0.00819358771364491 +lichen,lichen,north,,,Physcia.adscendens,oob_n,100,2139,2102,2172.3,0,2117.84,215.702035411834 +lichen,lichen,north,,,Physcia.adscendens,v2val_Climate,100,0.693903155154763,0.68873689780885,0.698042527967169,0.693422907498,0.693425239988998,0.00455590476618602 +lichen,lichen,north,,,Physcia.adscendens,v2val_Climate_Truncated,100,0.693897896800193,0.688717298999803,0.698042748005106,0.693419511127206,0.693419199828491,0.00455595056000061 +lichen,lichen,north,,,Physcia.adscendens,v2val_Landcover,100,0.80961766255631,0.788306510386797,0.821112870692013,0.812994033294577,0.806710170347431,0.0122139072223409 +lichen,lichen,north,,,Physcia.adscendens,v2val_Full,100,0.838564851497925,0.833625144582723,0.845039678547128,0.838268220834197,0.838860165193504,0.00428289618777393 +lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Truncated,100,0.838676134749758,0.833749257931369,0.845128664248426,0.838439032548488,0.839004303670565,0.00428658638871722 +lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Joint,100,0.836617198875312,0.832065573684458,0.842958635790047,0.836357683360022,0.83691865846465,0.00429944483812222 +lichen,lichen,north,,,Physcia.adscendens,v2val_Full_Joint_Truncated,100,0.836790613008269,0.832110390227703,0.843010056321518,0.836525866238843,0.837067766305659,0.00430236618224734 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Climate,99,0.689144635427072,0.680873381791638,0.698761438702953,,0.689944151401743,0.00752749596545798 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Climate_Truncated,99,0.689133844867517,0.680847879279384,0.698755518234618,,0.689936112376235,0.00752883261788045 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Landcover,99,0.806874249599937,0.78887752964357,0.820974567104598,,0.805611598774612,0.0131266310280001 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full,99,0.834569321101047,0.825318195008198,0.843996747262564,,0.834250987111902,0.00749714874962014 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Truncated,99,0.834936696506996,0.825421706977217,0.844055449907669,,0.83437995240235,0.00750763338892113 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Joint,99,0.833778617163388,0.821731526307177,0.841857565835814,,0.832252634909267,0.00757003130226506 +lichen,lichen,north,,,Physcia.adscendens,oob_v2val_Full_Joint_Truncated,99,0.833901297402281,0.821793123470401,0.841904293589348,,0.832384904604115,0.00757857623485009 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_auc,100,0.781684042308046,0.765640384141264,0.797179703714228,0.782940004828585,0.781676333839839,0.0130154436509732 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_deviance_explained,100,0.0746431854554901,0.0223294178074403,0.119031597017841,0.0760150539678254,0.0736556972289801,0.0351842750342643 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_rmse,100,0.275995706228603,0.269882754982075,0.282173258670592,0.27615265636656,0.276211470911464,0.00523773984534156 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_spearman,100,0.28310568536122,0.263220939796764,0.302878465345464,0.284558850730728,0.283028170917647,0.0155659147402555 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_calibration_slope,100,0.969408140199578,0.872250964334704,1.0498934023137,1.00400781901235,0.969089135162092,0.0739549375960856 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_prevalence,100,0.093062874358488,0.0871251477911935,0.0985096364127046,0.092924126172208,0.0927572998597921,0.00440698461079555 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_n,100,1483.5,1457,1509.1,2346,1491.36,88.3595181315768 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_auc,99,0.769192913385827,0.740816145064209,0.792152407634443,,0.768215251585846,0.0199068619157268 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_deviance_explained,99,0.0505922092383359,-0.0329852758014895,0.139764026101528,,0.0487721657556388,0.0623421727763089 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_rmse,99,0.279493123725846,0.267249177201436,0.289848088228818,,0.278942505131376,0.00937004241330042 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_spearman,99,0.271295013265206,0.239446468484223,0.297560773451075,,0.269796561448862,0.0220066528796733 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_calibration_slope,99,0.916343173764809,0.710147856469633,1.14861396527143,,0.920151180578528,0.167104019312427 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_prevalence,99,0.0926553672316384,0.0833333333333333,0.102941033138401,,0.0932003095021628,0.00766332811400026 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_n,100,862.5,836.9,889,0,854.64,88.3595181315768 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Climate,100,0.7235281228999,0.717441862095723,0.729839575280893,0.723004804073768,0.723606294712794,0.00491769024295873 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Climate_Truncated,100,0.723538229483672,0.717445780953459,0.729849398789947,0.72301652132686,0.723616220141786,0.00491840065072631 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Landcover,100,0.746462990180373,0.72844374826332,0.760216371643953,0.74708991515486,0.745785681959998,0.0130633127754132 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full,100,0.781684042308046,0.765640384141264,0.797179703714229,0.782940004828585,0.781676306707215,0.0130154673391364 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Truncated,100,0.781684042308046,0.765640384141264,0.797179703714229,0.782940004828585,0.781676306707215,0.0130154673391364 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Joint,100,0.782929579158528,0.767421869497933,0.797927045706971,0.783724649927571,0.782905885275834,0.0127193041319127 +lichen,lichen,south,,,Cladonia.chlorophaea,v2val_Full_Joint_Truncated,100,0.782929579158528,0.767421869497933,0.797927045706971,0.783724649927571,0.782905885275834,0.0127193041319127 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Climate,99,0.720918773373224,0.712650560435026,0.728579673956133,,0.720254269990376,0.00684047252129173 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Climate_Truncated,99,0.720930740463725,0.712658541338133,0.728614575624258,,0.720262774360831,0.00684229369105224 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Landcover,99,0.738834202254804,0.70857488379101,0.767503416567657,,0.738556793638447,0.0227512925106148 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full,99,0.769192913385827,0.740816145064209,0.792152407634443,,0.768215251585846,0.0199068619157268 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Truncated,99,0.769192913385827,0.740816145064209,0.792152407634443,,0.768215251585846,0.0199068619157268 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Joint,99,0.769436743032249,0.744011243283277,0.793514941384641,,0.769376490526319,0.0198118793475038 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_v2val_Full_Joint_Truncated,99,0.769436743032249,0.744011243283277,0.793514941384641,,0.769376490526319,0.0198118793475038 +lichen,lichen,south,,,Physcia.adscendens,insample_auc,100,0.821831844343548,0.812065145466866,0.832981098960484,0.821573724007562,0.822602490642638,0.00820141453904556 +lichen,lichen,south,,,Physcia.adscendens,insample_deviance_explained,100,0.237170661386886,0.219510717643112,0.255986468740278,0.239704709286469,0.23889952363214,0.0147145101288794 +lichen,lichen,south,,,Physcia.adscendens,insample_rmse,100,0.357252873593393,0.348305201157316,0.362461169441434,0.356794925429378,0.356285071369507,0.00567574404959237 +lichen,lichen,south,,,Physcia.adscendens,insample_spearman,100,0.458023774130778,0.442679862059661,0.472984030369328,0.458171869563314,0.458675282885617,0.0123819087346609 +lichen,lichen,south,,,Physcia.adscendens,insample_calibration_slope,100,0.888152815344288,0.840285468622313,0.943408159846428,0.895884570463108,0.890682810247115,0.0370099720944614 +lichen,lichen,south,,,Physcia.adscendens,insample_prevalence,100,0.214722124199446,0.205436679722394,0.223097894761383,0.215686274509804,0.214581356605682,0.00686172110100964 +lichen,lichen,south,,,Physcia.adscendens,insample_n,100,1480.5,1463,1508.1,2346,1490.81,88.2081668955359 +lichen,lichen,south,,,Physcia.adscendens,oob_auc,99,0.814451917130489,0.796076806462607,0.831527942532319,,0.814359351025112,0.0130779143217888 +lichen,lichen,south,,,Physcia.adscendens,oob_deviance_explained,99,0.225779360746976,0.185138161780104,0.25854922028543,,0.222258821844925,0.0264367203474249 +lichen,lichen,south,,,Physcia.adscendens,oob_rmse,99,0.361624348750091,0.350978747939952,0.373640208091773,,0.361691728719876,0.00868390876943342 +lichen,lichen,south,,,Physcia.adscendens,oob_spearman,99,0.451646207571005,0.418696037805258,0.471363487162008,,0.448947737025726,0.0191977246893696 +lichen,lichen,south,,,Physcia.adscendens,oob_calibration_slope,99,0.868814104763062,0.785393477348214,0.979345498722932,,0.873188345597572,0.0745634289298315 +lichen,lichen,south,,,Physcia.adscendens,oob_prevalence,99,0.217582417582418,0.203154716242863,0.232991265333397,,0.217536066561435,0.011825901143924 +lichen,lichen,south,,,Physcia.adscendens,oob_n,100,865.5,837.9,883,0,855.19,88.2081668955359 +lichen,lichen,south,,,Physcia.adscendens,v2val_Climate,100,0.693903155154763,0.68873689780885,0.698042527967169,0.693422907498,0.693425239988998,0.00455590476618602 +lichen,lichen,south,,,Physcia.adscendens,v2val_Climate_Truncated,100,0.693897896800193,0.688717298999803,0.698042748005106,0.693419511127206,0.693419199828491,0.00455595056000061 +lichen,lichen,south,,,Physcia.adscendens,v2val_Landcover,100,0.757941670475573,0.744902995002577,0.775307203498065,0.755514263619179,0.759442926524641,0.0120315587858542 +lichen,lichen,south,,,Physcia.adscendens,v2val_Full,100,0.821831844343548,0.812065145466866,0.832981098960484,0.821573724007562,0.822602490642638,0.00820141453904556 +lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Truncated,100,0.821831844343548,0.812065145466866,0.832981098960484,0.821573724007562,0.822606086718976,0.00820103018911374 +lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Joint,100,0.818461282378356,0.808982334731472,0.829948045116519,0.818413816807012,0.81963466150401,0.0082891560509187 +lichen,lichen,south,,,Physcia.adscendens,v2val_Full_Joint_Truncated,100,0.818465382979777,0.808982334731472,0.829948045116519,0.818413816807012,0.8196378969892,0.00828944043482759 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Climate,99,0.689144635427072,0.680873381791638,0.698761438702953,,0.689944151401743,0.00752749596545798 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Climate_Truncated,99,0.689133844867517,0.680847879279384,0.698755518234618,,0.689936112376235,0.00752883261788045 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Landcover,99,0.759559552987862,0.73362889344165,0.776333033950638,,0.756345152611023,0.0179796295216399 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full,99,0.814451917130489,0.796076806462607,0.831527942532319,,0.814359351025112,0.0130779143217888 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Truncated,99,0.814451917130489,0.796076806462607,0.831534146727906,,0.814363415003148,0.0130791932968188 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Joint,99,0.81242151354924,0.791924831211599,0.828123603004887,,0.811221663413056,0.0135783263054518 +lichen,lichen,south,,,Physcia.adscendens,oob_v2val_Full_Joint_Truncated,99,0.81242151354924,0.791924831211599,0.828123603004887,,0.811225340674517,0.0135803458787664 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_auc,100,0.823632636160737,0.814781230564576,0.831408128980217,0.820911148938545,0.823675923645461,0.00684650079811751 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_deviance_explained,100,0.279791843738347,0.261697566054768,0.292547470573807,0.272167552780268,0.279268031798116,0.0123653985651821 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_rmse,100,0.325947657311819,0.321499471172476,0.331112157543476,0.327783381237672,0.326268421037373,0.0036956317406385 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_spearman,100,0.462005079284434,0.44910358192168,0.473619794940904,0.457622037926128,0.46163002365065,0.0098966631801109 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_calibration_slope,100,0.974719951819278,0.940060183795489,1.01331111594891,0.987210797047211,0.976909872220407,0.0281027915235889 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_prevalence,100,0.225366262673778,0.220070866141732,0.230634088644114,0.22526523562793,0.225265109443517,0.00465839538219897 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_n,100,2564.5,2538.9,2588.1,4053,2577.75,150.218989976284 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_auc,99,0.808896640826873,0.79100198897739,0.827548123693069,,0.80902368196587,0.0125632085653662 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_deviance_explained,99,0.243486713148957,0.193079357602948,0.27747427555585,,0.236970758173865,0.0412490070366592 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_rmse,99,0.331823647228338,0.323085219723366,0.340284753308317,,0.3315507150309,0.00655753714958091 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_spearman,99,0.4394124176263,0.417905127967147,0.465739312197084,,0.440143399202189,0.0180559739989518 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_calibration_slope,99,0.93389114249429,0.850341206695487,1.01749958453456,,0.935850683714827,0.065644693475144 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_prevalence,99,0.224915824915825,0.215935838563886,0.234336783397599,,0.225278900992558,0.00808238984604556 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_n,100,1488.5,1464.9,1514.1,0,1475.25,150.218989976284 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_auc,100,0.61475601886175,0.603679345102737,0.627353730564579,0.614800455189874,0.615250750441242,0.00876252475511229 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_deviance_explained,100,0.032556283657145,0.0243296542272488,0.039523255842162,0.0327130199155846,0.0322154935907449,0.00570900014754448 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_rmse,100,0.440780068007451,0.437909796174194,0.443705369273563,0.440494520447441,0.44087693597343,0.00236282948666457 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_spearman,100,0.169333701727882,0.148930684100538,0.188146271759874,0.166867112583273,0.168773334408033,0.014769928213376 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_calibration_slope,100,0.847565289100029,0.777129508768977,0.945716349335048,0.901041907949805,0.851701384066199,0.0618664233849605 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_prevalence,100,0.321224265570394,0.314927013046706,0.329608505982353,0.321243523316062,0.321726728813055,0.00570583516475525 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_n,100,2562.5,2537.8,2585.2,4053,2576.41,150.50897453023 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_auc,99,0.59059424536098,0.573979407712817,0.607160496358349,,0.591330408828981,0.012632611891188 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_deviance_explained,99,0.0121132026875843,-0.00570566280736071,0.0241511023697404,,0.00982507363553751,0.0137967405537802 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_rmse,99,0.445175541404113,0.440470485230338,0.448886295412126,,0.44502064145941,0.00386271327949588 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_spearman,99,0.130783814760799,0.101891242189749,0.155800550653179,,0.130108564329046,0.020060042519966 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_calibration_slope,99,0.643049641195582,0.517287601824814,0.821946111710213,,0.662172316955322,0.120921477359268 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_prevalence,99,0.321309285237141,0.306674120479106,0.332295711996362,,0.320409946399226,0.00981841561898746 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_n,100,1490.5,1467.8,1515.2,0,1476.59,150.50897453023 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_auc,99,0.635001427076396,0.606104262619653,0.657438718250968,0.634240369366988,0.633224007711147,0.0193628357203509 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_deviance_explained,99,0.026440006660178,0.0180120188346803,0.0396931836083979,0.0264112493368064,0.0275214846978343,0.00892330854894092 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_rmse,99,0.421280362710698,0.414044874992987,0.426531332439636,0.421286846656193,0.420762330869611,0.00502970729821291 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_spearman,99,0.180460025029286,0.146567810345527,0.214594440680258,0.175369074792115,0.180194171413398,0.028556375742863 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_calibration_slope,99,0.913890378466184,0.820802523135607,1.01427035726621,1.00531761653027,0.920827083468546,0.0834520299703545 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_prevalence,99,0.690265486725664,0.677825953587333,0.705306871830739,0.691079812206573,0.690722612448517,0.0106422104740515 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_n,99,675,663,685.4,1065,678.252525252525,40.2928928341685 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_auc,98,0.591021454838246,0.551176084882234,0.62061474225386,,0.58902610051224,0.0277690972455097 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_deviance_explained,98,-0.000836625554455406,-0.0331073359910842,0.015317940018266,,-0.0142653121864615,0.0767808279247067 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_rmse,98,0.429820967393949,0.42171561998268,0.442398381954269,,0.431263519646702,0.008314809734625 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_spearman,98,0.110037755841753,0.0541619409153014,0.160705561767885,,0.109089508895746,0.0419990186736059 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_calibration_slope,98,0.602514054060098,0.232115218957736,0.865596324101407,,0.568328155159037,0.247381950253688 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_prevalence,98,0.69250645994832,0.665551467442457,0.71439588688946,,0.69177626225944,0.0183678991223671 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_n,99,390,379.6,402,0,386.747474747475,40.2928928341685 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_auc,100,0.786511166542812,0.769504152294664,0.804093618520575,0.786049924840508,0.78746671701533,0.0135173426522638 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_deviance_explained,100,0.21040174777469,0.184564736775399,0.242108898186897,0.205216892616348,0.212563634530583,0.0219479248585407 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_rmse,100,0.343613620192013,0.334680149069424,0.351940369457748,0.345153854253612,0.344018831580113,0.00644192047176435 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_spearman,100,0.38143205353404,0.353940396364084,0.410801187004518,0.381089371361329,0.382473611072285,0.0208009959103412 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_calibration_slope,100,0.984182683497037,0.904891334217879,1.06778036362132,0.986324497785332,0.988817389149015,0.0647894673241446 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_prevalence,100,0.182355333743735,0.168834754036547,0.195212578714749,0.182159624413146,0.182097557830322,0.00986022769722504 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_n,100,674,660.9,691.1,1065,678.58,40.7453734127625 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_auc,99,0.766688006828852,0.728742672765759,0.797692233844295,,0.766798974533161,0.0253241527196272 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_deviance_explained,99,0.160410765184501,-0.0354375437473713,0.21724314670011,,0.13739310872143,0.0906860074411385 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_rmse,99,0.350823352193687,0.337300969232687,0.368279364518069,,0.35201170608914,0.0122095118789058 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_spearman,99,0.356733670694178,0.298765552548449,0.401384960970594,,0.354627831294653,0.0368668870982284 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_calibration_slope,99,0.887224345060846,0.665784227384331,1.20908224079875,,0.901971450944314,0.19515811645007 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_prevalence,99,0.181578947368421,0.160028119078184,0.205617057719676,,0.182250919667934,0.0169141196650609 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_n,100,391,373.9,404.1,0,386.42,40.7453734127625 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_auc,100,0.840215938467687,0.83092115117171,0.849787411243392,0.839440907842931,0.839669355484163,0.00698601958736087 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_deviance_explained,100,0.295983987195951,0.279264150591629,0.313078108968483,0.294409607036222,0.295680875808017,0.0131751486193903 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_rmse,100,0.300488510882096,0.296257654339334,0.306287986982839,0.30069616131153,0.300981068877169,0.00414792565565438 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_spearman,100,0.464310589597897,0.45159625601271,0.478558931582411,0.463240577826878,0.464694557266924,0.0101849701273848 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_calibration_slope,100,0.972671886418681,0.93201508456542,1.02152533613636,0.982050704865843,0.975156802790362,0.0334477030664325 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_prevalence,100,0.201888432073211,0.197431539212855,0.208159731764965,0.201356917858008,0.202485373586251,0.0045069479986566 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_n,100,2609,2585,2637.1,4127,2624.81,152.9496976133 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_auc,99,0.83021391101824,0.813671018298189,0.846159487988212,,0.830184785139306,0.0136971622845655 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_deviance_explained,99,0.273408193489382,0.229352594121753,0.302275051480294,,0.265737070933002,0.0415956641165299 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_rmse,99,0.304113428131756,0.295100478568192,0.311362926507058,,0.303610679034069,0.00725152029521637 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_spearman,99,0.448324145179786,0.427614830976871,0.47442464641456,,0.448358238154674,0.018797957397872 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_calibration_slope,99,0.943994670763352,0.852757151203258,1.04492756918031,,0.941961322964594,0.0753885220594678 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_prevalence,99,0.200259235255995,0.189775542999326,0.208169005020511,,0.199411477918602,0.00778894989308338 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_n,100,1518,1489.9,1542,0,1502.19,152.9496976133 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_auc,100,0.67821310892138,0.663270440192927,0.695381764999782,0.668767750495832,0.678446035955246,0.0124541268014995 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_deviance_explained,100,0.0786332530404745,0.0665566425621889,0.0944247372062849,0.0713753243188524,0.0795171549028447,0.0109910722359914 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_rmse,100,0.332560139164442,0.327709275223946,0.336999200640023,0.332910274284271,0.332573560250602,0.00403872831084821 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_spearman,100,0.223831736114593,0.205313082589125,0.244481495615383,0.211955551417089,0.22398144430408,0.0152979471818789 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_calibration_slope,100,0.917861855484528,0.84216777747185,0.991483856313351,0.94812085347111,0.917671809987021,0.0580754453980805 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_prevalence,100,0.149990410433449,0.143887902486318,0.155025771607528,0.148776350860189,0.149556674913188,0.00428400474177712 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_n,100,2610,2586.7,2642.1,4127,2627.97,153.021715960695 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_auc,99,0.650339977044136,0.626283007371369,0.674110216571647,,0.650601001952465,0.0195432697044396 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_deviance_explained,99,0.0437348310014123,-0.0244103779855468,0.070888637861963,,0.0329829742284183,0.0426626562802078 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_rmse,99,0.335213172770143,0.328331589790136,0.342856337727437,,0.335001854069548,0.00684548448504912 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_spearman,99,0.189218625360862,0.156934768956714,0.217963256910742,,0.18874779877311,0.0243350933657214 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_calibration_slope,99,0.765031662278474,0.564319012355523,0.978273019865697,,0.768379952207126,0.174136095858455 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_prevalence,99,0.146603900470746,0.138208405767461,0.157249189724539,,0.147431774997664,0.00743974221077868 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_n,100,1517,1484.9,1540.3,0,1499.03,153.021715960695 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_auc,100,0.691441153027097,0.672240387183235,0.706212764410456,0.689082366331686,0.690562117093511,0.013224030335971 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_deviance_explained,100,0.067567099805677,0.0560696673854207,0.0822942032238073,0.0670547674954939,0.0687384650860427,0.0107595907570248 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_rmse,100,0.40682238205156,0.401865860344406,0.410771399612378,0.406888363248781,0.406494036967596,0.00369707913198616 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_spearman,100,0.299224586077027,0.269355636443703,0.329699476853509,0.296933239332004,0.299798019263556,0.0224654844995897 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_calibration_slope,100,0.992627010851258,0.920219152025468,1.09520751465362,1.03306130883064,0.999110545445596,0.0672957533751347 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_prevalence,100,0.603312544835565,0.587842923920052,0.618115052537349,0.604735883424408,0.603077490652041,0.012677090847138 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_n,100,695,682,708.1,1098,699.19,41.3864992869936 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_auc,99,0.664455665867854,0.639651542814446,0.690741654078452,,0.664981037722417,0.0209964276277022 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_deviance_explained,99,0.0446136452786412,0.00619180902025967,0.0633330011439923,,0.0346613411644444,0.0480802066560122 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_rmse,99,0.413228278046299,0.406653224893685,0.424163637351331,,0.414378421096751,0.00688416789861981 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_spearman,99,0.261506753321649,0.206422225163459,0.30115717511071,,0.256292271922553,0.0374825646865808 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_calibration_slope,99,0.817106846468162,0.635134217999263,1.06374115196959,,0.843268239144903,0.196769999721646 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_prevalence,99,0.6075,0.580323143750253,0.635349582154713,,0.607575707802926,0.0220264746278348 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_n,100,403,389.9,416,0,398.81,41.3864992869936 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_auc,100,0.820968430916565,0.801436993738574,0.84112134496232,0.819927852628077,0.82091181727687,0.0184559534681181 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_deviance_explained,100,0.239038869889767,0.21013927948378,0.277280840586616,0.234870911391229,0.241677933946565,0.0308121103886393 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_rmse,100,0.222369754770973,0.210112146550844,0.231243986964309,0.223331046901821,0.221987917660098,0.00767650273954978 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_spearman,100,0.312958724627694,0.294454461225426,0.33498073496289,0.313170610278462,0.313004953935226,0.0185636031576594 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_calibration_slope,100,0.883711120332416,0.748929633856669,1.03639244285071,0.926166715024209,0.898788757716915,0.120010897496752 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_prevalence,100,0.0873239436619718,0.0790283819028552,0.0939931596468854,0.0874316939890711,0.0868006891304234,0.00618273855118738 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_n,100,696,681,709.1,1098,699.13,41.7903993130895 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_auc,99,0.783524426719841,0.742644818301232,0.814561651279978,,0.780432466500186,0.0291483446368632 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_deviance_explained,99,0.154109596533938,-0.020676255891081,0.207600467554891,,0.103607468201795,0.17022756036237 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_rmse,99,0.232970422089708,0.214829244725729,0.249813879153275,,0.233231327846636,0.0131440394319924 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_spearman,99,0.278122302398705,0.235207424325587,0.312315920243565,,0.2752488104388,0.0295350486822564 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_calibration_slope,99,0.631374792805361,0.431072836936144,0.94521686736471,,0.670756173356288,0.251404463462431 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_prevalence,99,0.0876288659793814,0.0760837438423646,0.101576468326444,,0.0885136759760043,0.0105262059033636 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_n,100,402,388.9,417,0,398.87,41.7903993130895 +mite,mite,north,,,Ceratozetes.gracilis,insample_auc,100,0.792129407675089,0.784999351238186,0.798007653851505,0.791183069113511,0.791906840547393,0.00544399156186335 +mite,mite,north,,,Ceratozetes.gracilis,insample_deviance_explained,100,0.122009919458204,0.105506517747849,0.147733814877035,0.125527507164404,0.125043569305553,0.0170734779462856 +mite,mite,north,,,Ceratozetes.gracilis,insample_rmse,100,0.364379787990174,0.359996548653916,0.368133999109812,0.364308079016483,0.364109394241196,0.00321218794005143 +mite,mite,north,,,Ceratozetes.gracilis,insample_spearman,100,0.410921214620842,0.399217261743554,0.419680129797295,0.409677886636093,0.410537579833619,0.00847052427001244 +mite,mite,north,,,Ceratozetes.gracilis,insample_calibration_slope,100,1.01595003500855,0.983240718382626,1.03958134119226,1.0224894029886,1.01359589592744,0.0221998468216077 +mite,mite,north,,,Ceratozetes.gracilis,insample_prevalence,100,0.208199871528185,0.202330059472997,0.21373147884126,0.208369812642269,0.208198118294499,0.00445679417236687 +mite,mite,north,,,Ceratozetes.gracilis,insample_n,100,3611.5,3576.4,3648.1,5711,3631.96,212.045922222789 +mite,mite,north,,,Ceratozetes.gracilis,oob_auc,99,0.784719038881003,0.773178754620244,0.795479334633468,,0.78480049681131,0.00901960368240741 +mite,mite,north,,,Ceratozetes.gracilis,oob_deviance_explained,99,0.118119744327437,0.0725687685466482,0.15190583643936,,0.114824027643307,0.029805497491046 +mite,mite,north,,,Ceratozetes.gracilis,oob_rmse,99,0.366792544747802,0.360557502232102,0.374185704812434,,0.367066583729595,0.00536579186728965 +mite,mite,north,,,Ceratozetes.gracilis,oob_spearman,99,0.399298935173913,0.383832206046233,0.41748047733098,,0.400797216934854,0.0139071725363907 +mite,mite,north,,,Ceratozetes.gracilis,oob_calibration_slope,99,0.989148634544638,0.915741317357146,1.06794794200871,,0.989324126173001,0.0684504551385508 +mite,mite,north,,,Ceratozetes.gracilis,oob_prevalence,99,0.208786017949929,0.199496646948345,0.218887953819956,,0.208656017476228,0.00767785572051809 +mite,mite,north,,,Ceratozetes.gracilis,oob_n,100,2099.5,2062.9,2134.6,0,2079.04,212.045922222789 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Climate,100,0.737438837044945,0.73108563444224,0.745220440466574,0.738382414749567,0.737893214833432,0.00582359893684874 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Climate_Truncated,100,0.737426078766032,0.731081895217831,0.745228984913048,0.738392463572007,0.73788963284515,0.00582778160378845 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Landcover,100,0.766528013047557,0.758672408700658,0.774519100120648,0.766722893536977,0.766563803318875,0.00580598395050868 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Full,100,0.792129407675089,0.784999351238186,0.798007653851505,0.791183069113511,0.791906840547393,0.00544399156186334 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Truncated,100,0.792086330384434,0.784902829890835,0.797978154154108,0.791105466738786,0.791854541566928,0.005453008921918 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Joint,100,0.792319179894978,0.785107596237888,0.798106897210031,0.791225262500488,0.791939894347027,0.00544624414806769 +mite,mite,north,,,Ceratozetes.gracilis,v2val_Full_Joint_Truncated,100,0.792270646461233,0.784996783953025,0.798085250808367,0.7911589984368,0.791888281611667,0.00545544111095612 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Climate,99,0.734956389373006,0.72425367499707,0.745909153373562,,0.735100506489349,0.00876458803277343 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Climate_Truncated,99,0.734924300615503,0.724212897038428,0.74588498630922,,0.735097833438642,0.00876964879390889 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Landcover,99,0.758805093399336,0.746485924819688,0.771387018903544,,0.758810604565619,0.00993793197786593 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full,99,0.784719038881003,0.773178754620244,0.795479334633468,,0.78480049681131,0.00901960368240741 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Truncated,99,0.784702420108714,0.773175774381691,0.795336105984979,,0.784747787011435,0.00902130952499755 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Joint,99,0.78489164605236,0.773137004390567,0.795379252566855,,0.784775999429518,0.00899120753933227 +mite,mite,north,,,Ceratozetes.gracilis,oob_v2val_Full_Joint_Truncated,99,0.784845263863121,0.773124471326533,0.795223511559166,,0.784726566030256,0.00899244406266966 +mite,mite,north,,,Trhypochthonius.tectorum,insample_auc,100,0.678069892111616,0.668115642289897,0.691570135316744,0.669778092188547,0.678752544253902,0.00947208648418938 +mite,mite,north,,,Trhypochthonius.tectorum,insample_deviance_explained,100,-0.0368452260055346,-0.0682941751227869,-0.00255544178138947,-0.0407269697080057,-0.0364809314889776,0.0262932613980969 +mite,mite,north,,,Trhypochthonius.tectorum,insample_rmse,100,0.288070092036026,0.282857969082718,0.292653967302732,0.288562681524747,0.287754832922078,0.00384143226433056 +mite,mite,north,,,Trhypochthonius.tectorum,insample_spearman,100,0.18098870450182,0.169919554505247,0.194146419965388,0.1729413278484,0.181801741064018,0.00977765079954406 +mite,mite,north,,,Trhypochthonius.tectorum,insample_calibration_slope,100,0.909024454588184,0.859802025960073,0.988693406278281,0.931192865479756,0.914839490519967,0.0483722614322174 +mite,mite,north,,,Trhypochthonius.tectorum,insample_prevalence,100,0.0955235096257067,0.0915774802199236,0.0988495023046604,0.0956049728593941,0.0953138578226632,0.00288206269115545 +mite,mite,north,,,Trhypochthonius.tectorum,insample_n,100,3611,3575.8,3647.3,5711,3631.94,211.752896775769 +mite,mite,north,,,Trhypochthonius.tectorum,oob_auc,99,0.651718898385565,0.636655558271588,0.67451733769942,,0.652907178016938,0.0167583643072955 +mite,mite,north,,,Trhypochthonius.tectorum,oob_deviance_explained,99,-0.0575714810059216,-0.112502464628897,-0.0027635909619126,,-0.0572098240730854,0.0445088508896696 +mite,mite,north,,,Trhypochthonius.tectorum,oob_rmse,99,0.29110524405314,0.283570244584228,0.298971477089966,,0.290963078829182,0.00656721377239943 +mite,mite,north,,,Trhypochthonius.tectorum,oob_spearman,99,0.155206226825603,0.137210033876081,0.181318554158579,,0.156081411195042,0.0176187871271494 +mite,mite,north,,,Trhypochthonius.tectorum,oob_calibration_slope,99,0.763212071805358,0.587565618168323,1.00996351231119,,0.787089127565611,0.160807945509925 +mite,mite,north,,,Trhypochthonius.tectorum,oob_prevalence,99,0.095769409576941,0.0898898158460644,0.102527927842943,,0.096111042002143,0.00496473000095631 +mite,mite,north,,,Trhypochthonius.tectorum,oob_n,100,2100,2063.7,2135.2,0,2079.06,211.752896775769 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Climate,100,0.646399889389764,0.635927059979148,0.656681007348258,0.646091585413555,0.646522072611516,0.00866859018864584 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Climate_Truncated,100,0.646412518420192,0.635932057855205,0.656705753288746,0.646095557008706,0.6465284694258,0.0086713166850178 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Landcover,100,0.647813214614084,0.635162138711342,0.660710676806236,0.637987440117159,0.647311077233682,0.0106115488406471 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full,100,0.678069892111616,0.668115642289897,0.691570135316744,0.669778092188547,0.678752544253902,0.00947208648418938 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Truncated,100,0.67819925700999,0.668189835369413,0.691638395354139,0.669767986128102,0.67879406642804,0.00947481630164468 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Joint,100,0.677875105270547,0.667971879477692,0.691152263754938,0.66926215120794,0.678381647313134,0.00941622769295664 +mite,mite,north,,,Trhypochthonius.tectorum,v2val_Full_Joint_Truncated,100,0.677978875377472,0.668016715774074,0.691209732839322,0.669242116386356,0.678420178756369,0.00942453018036121 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Climate,99,0.638342287752377,0.618187226042641,0.657504024919964,,0.637953095919155,0.0139213687493182 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Climate_Truncated,99,0.638365821429941,0.618184154764979,0.657498616560185,,0.63795936984293,0.0139197656380263 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Landcover,99,0.612701645627281,0.590187575597952,0.631325206986045,,0.611724798428414,0.0168094669659235 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full,99,0.651718898385565,0.636655558271588,0.67451733769942,,0.652907178016938,0.0167583643072955 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Truncated,99,0.651754510921178,0.636777941613843,0.674583194603189,,0.652936398973167,0.0167685348392897 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint,99,0.650619319414049,0.636142187917328,0.674471465378823,,0.652461931967687,0.0168313415387555 +mite,mite,north,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint_Truncated,99,0.650697674418605,0.636256531006593,0.674578866782116,,0.652498319129767,0.0168341741163087 +mite,mite,south,,,Ceratozetes.gracilis,insample_auc,100,0.882042472336732,0.867054900665937,0.899986632313541,0.880842240129472,0.882322276641526,0.0132381179945983 +mite,mite,south,,,Ceratozetes.gracilis,insample_deviance_explained,100,0.162614490297314,0.0777788156748961,0.225562200481615,0.169227984866749,0.160637197640161,0.0572623024217528 +mite,mite,south,,,Ceratozetes.gracilis,insample_rmse,100,0.215336910406949,0.206222935012387,0.227414113800871,0.215105469199925,0.216127493893305,0.0089202537508183 +mite,mite,south,,,Ceratozetes.gracilis,insample_spearman,100,0.302966782747602,0.288464631601536,0.32118873186967,0.304054710362117,0.303893991622355,0.0128759707493448 +mite,mite,south,,,Ceratozetes.gracilis,insample_calibration_slope,100,0.633858013835467,0.57701419970735,0.715791187269228,0.652084939529121,0.640585938034401,0.0570205226758973 +mite,mite,south,,,Ceratozetes.gracilis,insample_prevalence,100,0.0560369998468874,0.0512751399543853,0.0605680889804702,0.0562843842573,0.0558342783814166,0.00341063730227376 +mite,mite,south,,,Ceratozetes.gracilis,insample_n,100,1494,1472,1519,2363,1504.67,88.4284856293891 +mite,mite,south,,,Ceratozetes.gracilis,oob_auc,99,0.876754158004158,0.836903325941546,0.898009878626587,,0.872444811162145,0.0230545433961382 +mite,mite,south,,,Ceratozetes.gracilis,oob_deviance_explained,99,0.134999353201265,-0.00889638782245273,0.264949317350181,,0.130476654889871,0.111912159188459 +mite,mite,south,,,Ceratozetes.gracilis,oob_rmse,99,0.221584434569559,0.207404002289556,0.237199435178253,,0.222481971645003,0.0114073861908326 +mite,mite,south,,,Ceratozetes.gracilis,oob_spearman,99,0.302959666655477,0.26967539640805,0.323772752924841,,0.298744388018196,0.021660574478285 +mite,mite,south,,,Ceratozetes.gracilis,oob_calibration_slope,99,0.615144315404027,0.482526188101708,0.768838886887849,,0.618289396274892,0.113776532076257 +mite,mite,south,,,Ceratozetes.gracilis,oob_prevalence,99,0.0567536889897843,0.0492060040243461,0.0647286476351338,,0.0570889464388298,0.00591758129066131 +mite,mite,south,,,Ceratozetes.gracilis,oob_n,100,869,844,891,0,858.33,88.4284856293891 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Climate,100,0.737438837044945,0.73108563444224,0.745220440466574,0.738382414749567,0.737893214833432,0.00582359893684874 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Climate_Truncated,100,0.737426078766032,0.731081895217831,0.745228984913048,0.738392463572007,0.73788963284515,0.00582778160378845 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Landcover,100,0.722459055126778,0.706537970365812,0.746090508309774,0.719697225125594,0.723380133160059,0.0165967097389396 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Full,100,0.882042472336732,0.867054900665937,0.899986632313541,0.880842240129472,0.882322276641526,0.0132381179945983 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Truncated,100,0.882042472336732,0.867050421871751,0.899986632313541,0.880842240129472,0.88233488405599,0.0132374957731242 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Joint,100,0.88218958764066,0.867694458860852,0.899921384780916,0.880966991469706,0.882776207033132,0.0132807849516571 +mite,mite,south,,,Ceratozetes.gracilis,v2val_Full_Joint_Truncated,100,0.882197733815623,0.867697066513443,0.899923812672535,0.880966991469706,0.88279023554522,0.0132826269505192 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Climate,99,0.734956389373006,0.72425367499707,0.745909153373562,,0.735100506489349,0.00876458803277343 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Climate_Truncated,99,0.734924300615503,0.724212897038428,0.74588498630922,,0.735097833438642,0.00876964879390889 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Landcover,99,0.709904009034444,0.670283600525517,0.7409295732199,,0.70679942566686,0.0276325860153904 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full,99,0.876754158004158,0.836903325941546,0.898009878626587,,0.872444811162145,0.0230545433961382 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Truncated,99,0.876754158004158,0.836903325941546,0.89813801872643,,0.872455659810042,0.0230619557300879 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Joint,99,0.876374929418408,0.836856202096876,0.898594288869518,,0.872801697226736,0.0231431608260651 +mite,mite,south,,,Ceratozetes.gracilis,oob_v2val_Full_Joint_Truncated,99,0.876374929418408,0.836856202096876,0.89863479109714,,0.872812264401578,0.023150734197912 +mite,mite,south,,,Trhypochthonius.tectorum,insample_auc,100,0.709232811452144,0.690803634887013,0.726193259599038,0.705313075635924,0.708081545618318,0.0141896548013891 +mite,mite,south,,,Trhypochthonius.tectorum,insample_deviance_explained,100,0.0134243526591984,-0.025273524574298,0.0562624866131831,0.01492775208855,0.0127384431064294,0.0320456517564559 +mite,mite,south,,,Trhypochthonius.tectorum,insample_rmse,100,0.27040810983782,0.262223537819998,0.279012137488867,0.270464873051431,0.270016716201898,0.00641929093543169 +mite,mite,south,,,Trhypochthonius.tectorum,insample_spearman,100,0.199703196593277,0.182799797214527,0.217415432959639,0.196610759018781,0.199102672893254,0.0136169191747558 +mite,mite,south,,,Trhypochthonius.tectorum,insample_calibration_slope,100,0.963961631077281,0.85530364380815,1.07961405898617,0.964366086336983,0.962476297320285,0.0874794028240859 +mite,mite,south,,,Trhypochthonius.tectorum,insample_prevalence,100,0.0834614879480407,0.0777956447270506,0.0898914722165834,0.0833685992382565,0.0833494515789424,0.00446413642909666 +mite,mite,south,,,Trhypochthonius.tectorum,insample_n,100,1491,1464.9,1513.1,2363,1499.18,89.0711190141016 +mite,mite,south,,,Trhypochthonius.tectorum,oob_auc,99,0.6853880850931,0.650846584321518,0.723794885344973,,0.685035421710412,0.026410918874719 +mite,mite,south,,,Trhypochthonius.tectorum,oob_deviance_explained,99,-9.47427269151202e-05,-0.0726329251352739,0.0665569592266466,,0.000678534974625397,0.0553257727046553 +mite,mite,south,,,Trhypochthonius.tectorum,oob_rmse,99,0.271561650638129,0.256381697890327,0.285993621786537,,0.272216669092612,0.0115503096006122 +mite,mite,south,,,Trhypochthonius.tectorum,oob_spearman,99,0.177375158315331,0.144925896204165,0.202434935632397,,0.176594374306304,0.0238480927637576 +mite,mite,south,,,Trhypochthonius.tectorum,oob_calibration_slope,99,0.818884591373319,0.561568710570099,1.11327887154351,,0.840244172479075,0.219053503757484 +mite,mite,south,,,Trhypochthonius.tectorum,oob_prevalence,99,0.0830489192263936,0.0720677621944575,0.0927861264477562,,0.0833571385533332,0.00771043845051548 +mite,mite,south,,,Trhypochthonius.tectorum,oob_n,100,872,849.9,898.1,0,863.82,89.0711190141016 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Climate,100,0.646399889389764,0.635927059979148,0.656681007348258,0.646091585413555,0.646522072611516,0.00866859018864584 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Climate_Truncated,100,0.646412518420192,0.635932057855205,0.656705753288746,0.646095557008706,0.6465284694258,0.0086713166850178 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Landcover,100,0.664748292002699,0.648949581753739,0.681661010034853,0.660231262098608,0.66502081318985,0.0134307698239174 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full,100,0.709232811452144,0.690803634887013,0.726193259599038,0.705313075635924,0.708081545618318,0.0141896548013891 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Truncated,100,0.709232811452144,0.690805644856461,0.726193259599038,0.705313075635924,0.708081194793617,0.0141901668247312 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Joint,100,0.709509901712321,0.691147459247223,0.726823632228287,0.705786473932628,0.708424868796846,0.0142360287827042 +mite,mite,south,,,Trhypochthonius.tectorum,v2val_Full_Joint_Truncated,100,0.709509901712321,0.691165548972259,0.726823632228287,0.705786473932628,0.708423594415862,0.0142355520165371 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Climate,99,0.638342287752377,0.618187226042641,0.657504024919964,,0.637953095919155,0.0139213687493182 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Climate_Truncated,99,0.638365821429941,0.618184154764979,0.657498616560185,,0.63795936984293,0.0139197656380263 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Landcover,99,0.64709784411277,0.613057015806844,0.677195295537004,,0.646499544607683,0.024943812330342 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full,99,0.6853880850931,0.650846584321518,0.723794885344973,,0.685035421710412,0.026410918874719 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Truncated,99,0.6853880850931,0.650846584321518,0.723780455330544,,0.685033348915419,0.0264104026620184 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint,99,0.685599471717562,0.651414735716439,0.724097221093466,,0.685371005730218,0.0263972209171517 +mite,mite,south,,,Trhypochthonius.tectorum,oob_v2val_Full_Joint_Truncated,99,0.685599471717562,0.651414735716439,0.724082791079036,,0.685369115078644,0.026398035901688 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_auc,100,0.831134546695233,0.826453555719213,0.836685470451462,0.830322798090827,0.831298153773669,0.0041118756003647 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_deviance_explained,100,0.173112398678171,0.151990889699408,0.198274526579388,0.172184312829234,0.174570606710144,0.0185953750404148 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_rmse,100,0.406066136773964,0.402324513457484,0.408682256419264,0.406706951792596,0.405871315010508,0.00248415181519104 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_spearman,100,0.565733957650969,0.557552538982731,0.574950155963402,0.564448272444098,0.56595662935256,0.00718112691000883 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_calibration_slope,100,0.97860388604858,0.964882983290987,0.989133629080366,0.979847210350883,0.977411740176955,0.00976380898993662 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_prevalence,100,0.417040220010148,0.411257497538122,0.423685039429209,0.418242653476869,0.417566474780968,0.0050643333322286 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_n,100,4347,4323.8,4387.3,6874,4375.74,253.599884491577 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_auc,99,0.82569836781474,0.8151054765314,0.834113856944233,,0.824638086496465,0.00813650649779959 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_deviance_explained,99,0.162350717059594,0.12432229395731,0.199559641156428,,0.16046314456472,0.0319743759699511 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_rmse,99,0.409849865396638,0.404625158470182,0.416573085904806,,0.410388789111666,0.00493438970608212 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_spearman,99,0.55706274107758,0.539462827520088,0.571144838526694,,0.554863670389003,0.0141546584447704 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_calibration_slope,99,0.957443073645124,0.910290238393626,0.998554484033824,,0.957308638882531,0.0357045151849448 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_prevalence,99,0.42032967032967,0.408683029891007,0.430237615488184,,0.419398251813656,0.00874413998553782 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_n,100,2527,2486.7,2550.2,0,2498.26,253.599884491577 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Climate,100,0.691863415791796,0.686489408923301,0.696719641146645,0.691923775211569,0.691894533269453,0.00445587603994641 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Climate_Truncated,100,0.691859795870376,0.686499004324016,0.696720903409118,0.691928871889894,0.691890269451175,0.00445519768099013 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Landcover,100,0.80581950873551,0.801033316272367,0.811556580125044,0.804887352272851,0.805895402088074,0.0044231381532374 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full,100,0.831134546695233,0.826453555719213,0.836685470451462,0.830322798090827,0.831298153773669,0.0041118756003647 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Truncated,100,0.8312443254568,0.826661177425835,0.836774505270543,0.830433260489035,0.831444227813675,0.00410167697821638 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Joint,100,0.828855917801472,0.823553013652392,0.83406033197307,0.82780564706394,0.828773545705657,0.00411878241749989 +vascular_plant,vascular_plant,north,,,Galium.boreale,v2val_Full_Joint_Truncated,100,0.828971835122009,0.823795676153817,0.834143980306853,0.827924459375713,0.828935804569122,0.00410707992737368 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Climate,99,0.691331058165982,0.68123155690267,0.699550146575686,,0.690889369121621,0.00747058149811884 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Climate_Truncated,99,0.691338305732185,0.681225313457141,0.699561362431822,,0.690887867296351,0.0074698962163638 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Landcover,99,0.799340331576827,0.791358391790512,0.809202566122227,,0.7995856731901,0.00730156109328004 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full,99,0.825698367814741,0.8151054765314,0.834113856944233,,0.824638086496465,0.0081365064977996 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Truncated,99,0.82605648894629,0.81517852582592,0.834212154167315,,0.824815806418656,0.00813863231854934 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Joint,99,0.822773343144525,0.812613222290088,0.831727369850404,,0.822259354223517,0.00815916403436158 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_v2val_Full_Joint_Truncated,99,0.823115028001722,0.812677850152807,0.831916422372746,,0.822447570861779,0.00815900286391217 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_auc,100,0.834462365229321,0.829555965644719,0.838247068153718,0.834425701496386,0.834156508058564,0.00390712025553038 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_deviance_explained,100,0.156165011902613,0.132197189339854,0.181189297594507,0.160280734393984,0.156953991296769,0.0195818799853006 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_rmse,100,0.397932383252347,0.394972074131294,0.401608842593717,0.397892542228527,0.398061919866914,0.00266094435496573 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_spearman,100,0.561526870364541,0.553087459677389,0.56836768502959,0.561646901356684,0.561165502395285,0.00644926216942627 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_calibration_slope,100,1.00407638746794,0.989528566101329,1.01707061252423,1.00546871573532,1.00362906728795,0.01184563660741 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_prevalence,100,0.377306878145649,0.372421470873602,0.383305291434879,0.377654931626418,0.377645635778588,0.00438562694718228 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_n,100,4351.5,4320.7,4383,6874,4375,253.690696906626 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_auc,99,0.831908202854914,0.823072908701431,0.839274892124523,,0.831733520610796,0.00677774398956519 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_deviance_explained,99,0.162875316778264,0.119605178758743,0.20106324082857,,0.159283292067542,0.0335257712056185 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_rmse,99,0.399617889749244,0.39412182885695,0.405567788061436,,0.399698940236208,0.0044188401021575 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_spearman,99,0.556417371147815,0.542901607620281,0.569873856219091,,0.557046878466751,0.011219585612923 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_calibration_slope,99,0.991937092293116,0.955318586724906,1.03912209775136,,0.995470866449014,0.0345876030813513 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_prevalence,99,0.378367511057499,0.367908590365397,0.386595299016258,,0.377659774447659,0.00761588200173284 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_n,100,2522.5,2491,2553.3,0,2499,253.690696906626 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Climate,100,0.688696490409687,0.683131845162456,0.693889144615178,0.688388374288585,0.688621990063532,0.00412553912422629 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Climate_Truncated,100,0.68869360113843,0.683133652338722,0.693889124375781,0.688377053340582,0.688614399707046,0.00412470056301897 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Landcover,100,0.810187285280975,0.804248133867056,0.815353122716748,0.809938249660894,0.810061294857534,0.00418910533208802 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full,100,0.834462365229321,0.829555965644719,0.838247068153718,0.834425701496386,0.834156508058564,0.00390712025553038 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Truncated,100,0.834403943416699,0.829592504956551,0.838224259430919,0.834353666337466,0.834105762434836,0.00390356654875979 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Joint,100,0.834056473759319,0.828597426961828,0.837786033350782,0.833795663987679,0.833609567573939,0.00401754731306162 +vascular_plant,vascular_plant,north,,,Vicia.americana,v2val_Full_Joint_Truncated,100,0.834022959691282,0.828654047414811,0.837750473486802,0.833746590035665,0.833578460092935,0.00400864071132039 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Climate,99,0.68632433751116,0.677583119454865,0.696836659504796,,0.686449267875391,0.0073473896012191 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Climate_Truncated,99,0.686313307565072,0.677589110480343,0.696832207844605,,0.6864411902306,0.00734698681951272 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Landcover,99,0.80682764061935,0.799080161359292,0.816069162479425,,0.807515159411571,0.00711332501244447 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full,99,0.831908202854914,0.823072908701431,0.839274892124523,,0.831733520610796,0.00677774398956519 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Truncated,99,0.831845257508434,0.823068897237684,0.839217924213412,,0.83168093748557,0.00677684452567691 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Joint,99,0.831226336599178,0.822851131341598,0.83913038872951,,0.831268965388443,0.0067832572296125 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_v2val_Full_Joint_Truncated,99,0.831315346461213,0.822816857019605,0.839004986966977,,0.831239888725875,0.0067818441304473 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_auc,100,0.890558388031281,0.882171718281364,0.900674587667653,0.890081979393699,0.890948037598872,0.00737317830209286 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_deviance_explained,100,0.361046490861266,0.331497619359063,0.398846135277982,0.36183949121173,0.363555013760275,0.0272347246520841 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_rmse,100,0.311925436683812,0.304961805152742,0.319145651764535,0.312233283277407,0.311966199407763,0.00597869325351937 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_spearman,100,0.562739017064858,0.54700937783985,0.577784265667258,0.561632279820523,0.562867645820357,0.0120531272855094 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_calibration_slope,100,0.974937713081333,0.946421576330795,1.00185719923782,0.982887664309838,0.975439443766906,0.0212791262815717 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_prevalence,100,0.222355073854372,0.213781211105625,0.230552475073514,0.222054380664653,0.222167047029424,0.00682281409228088 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_n,100,1673.5,1649.8,1699,2648,1684.04,99.2542821507089 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_auc,99,0.886224245054594,0.869117901860841,0.900597865515415,,0.88482778308073,0.013182394247495 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_deviance_explained,99,0.346416411854555,0.275583053084592,0.407353708952503,,0.342984147988822,0.0486705344386625 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_rmse,99,0.317389348909917,0.305954667637014,0.329307678069678,,0.316868547652413,0.00946546383314156 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_spearman,99,0.553624055417743,0.528963180545834,0.58079298488562,,0.553587787336331,0.0210780333892086 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_calibration_slope,99,0.958375644901882,0.894459487590919,1.03023722235571,,0.957929472036104,0.0530857567789647 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_prevalence,99,0.221428571428571,0.207598481204393,0.237028340402618,,0.221907015900446,0.0118908871510374 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_n,100,974.5,949,998.2,0,963.96,99.2542821507089 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Climate,100,0.691863415791796,0.686489408923301,0.696719641146645,0.691923775211569,0.691894533269453,0.00445587603994641 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Climate_Truncated,100,0.691859795870376,0.686499004324016,0.696720903409118,0.691928871889894,0.691890269451175,0.00445519768099013 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Landcover,100,0.797226829924464,0.785166290798729,0.807521076761336,0.795978634172116,0.79700819639367,0.008345625206748 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full,100,0.890558388031281,0.882171718281364,0.900674587667653,0.890081979393699,0.890948037598872,0.00737317830209288 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Truncated,100,0.890574871795092,0.882170390818819,0.900674379527283,0.890081979393699,0.890934967061287,0.0073763331722304 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Joint,100,0.883627775630597,0.874438730295859,0.894315052003888,0.88338493164256,0.884078846607597,0.00766469471525182 +vascular_plant,vascular_plant,south,,,Galium.boreale,v2val_Full_Joint_Truncated,100,0.883627775630597,0.87442136391673,0.894317713023663,0.88338493164256,0.88406133901058,0.00767415632203247 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Climate,99,0.691331058165982,0.68123155690267,0.699550146575686,,0.690889369121621,0.00747058149811884 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Climate_Truncated,99,0.691338305732185,0.681225313457141,0.699561362431822,,0.690887867296351,0.0074698962163638 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Landcover,99,0.791207477106083,0.77381064055505,0.807775099233706,,0.789903512001199,0.0127438073604377 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full,99,0.886224245054594,0.869117901860841,0.900597865515415,,0.88482778308073,0.013182394247495 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Truncated,99,0.886258508840057,0.869093352344466,0.90056962418037,,0.884809986381921,0.0131764720149128 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Joint,99,0.879593365215479,0.861830386153107,0.895754987854818,,0.878356218982495,0.0137612051418777 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_v2val_Full_Joint_Truncated,99,0.879593365215479,0.86182583656257,0.895721611731583,,0.878333602906581,0.0137542075502168 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_auc,100,0.809819891801173,0.800947962462695,0.816880517210972,0.808012980346143,0.809089822781446,0.00690648453967088 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_deviance_explained,100,0.179642314627932,0.153940409158596,0.20752984789657,0.179903957587885,0.180118385470975,0.0215380698202425 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_rmse,100,0.379372985546866,0.37545105828979,0.384649689795232,0.380313032587985,0.379829729084139,0.00396265334790704 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_spearman,100,0.472883674238892,0.458534172969502,0.485310165961314,0.470529100145484,0.471767805082052,0.0116412129451193 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_calibration_slope,100,0.931274132299353,0.905253599608265,0.96344957724931,0.933688472158773,0.93180753527467,0.0244687643273802 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_prevalence,100,0.264335131120709,0.2545896459474,0.271697484166548,0.264350453172205,0.263746825699997,0.00674142412337554 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_n,100,1674,1653.9,1694.3,2648,1683.75,98.5369104816704 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_auc,99,0.802421159411642,0.790284494061973,0.816722022145616,,0.80285836683785,0.011011914390405 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_deviance_explained,99,0.170924192351118,0.12510987492284,0.212049025615336,,0.169465268498121,0.0356061684635425 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_rmse,99,0.384084233912741,0.375889468698802,0.390436580010526,,0.383626381102837,0.00624562732043585 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_spearman,99,0.462037904205897,0.441622871960362,0.484768573822883,,0.463041816680797,0.018562866672894 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_calibration_slope,99,0.909534488223361,0.839366367291365,0.984945720435864,,0.91578722707308,0.0605725488324959 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_prevalence,99,0.26440329218107,0.251305848210322,0.281129701184139,,0.265369246565671,0.0116510729352179 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_n,100,974,953.7,994.1,0,964.25,98.5369104816704 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Climate,100,0.688696490409687,0.683131845162456,0.693889144615178,0.688388374288585,0.688621990063532,0.00412553912422629 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Climate_Truncated,100,0.68869360113843,0.683133652338722,0.693889124375781,0.688377053340582,0.688614399707046,0.00412470056301897 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Landcover,100,0.766748996494141,0.75614009820194,0.776155586594122,0.76658587562335,0.766351685901382,0.00806073007148555 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full,100,0.809819891801173,0.800947962462695,0.816880517210972,0.808012980346143,0.809089822781446,0.00690648453967088 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Truncated,100,0.809800062836453,0.800947962462695,0.816879321482204,0.808015180404811,0.80908744427468,0.00690555077620322 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Joint,100,0.807080547858112,0.797845801552239,0.813867490124536,0.804804561454972,0.806165137711477,0.00690452654604547 +vascular_plant,vascular_plant,south,,,Vicia.americana,v2val_Full_Joint_Truncated,100,0.807067965171889,0.797841230192768,0.81385074593849,0.804805294807862,0.806163852927256,0.00690324507388035 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Climate,99,0.68632433751116,0.677583119454865,0.696836659504796,,0.686449267875391,0.0073473896012191 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Climate_Truncated,99,0.686313307565072,0.677589110480343,0.696832207844605,,0.6864411902306,0.00734698681951272 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Landcover,99,0.763763509218055,0.748548282413935,0.778515474422235,,0.763224650911401,0.0132302965557088 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full,99,0.802421159411642,0.790284494061973,0.816722022145616,,0.80285836683785,0.011011914390405 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Truncated,99,0.802421159411642,0.790291050006029,0.816723086088588,,0.802857402883007,0.0110081094613289 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Joint,99,0.799441687344913,0.787028453317583,0.814549757529911,,0.799955382875909,0.0116040935860257 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_v2val_Full_Joint_Truncated,99,0.799412018556479,0.787026434186315,0.814551885415856,,0.799955808981057,0.0115988844671904 diff --git a/3_output/exp_000_parity_v2/tables/parity_summary.csv b/3_output/exp_000_parity_v2/tables/parity_summary.csv index bc9bbba..f4a9719 100644 --- a/3_output/exp_000_parity_v2/tables/parity_summary.csv +++ b/3_output/exp_000_parity_v2/tables/parity_summary.csv @@ -1,23 +1,23 @@ taxon,region,stage,comparison,species,terms_compared,min_draws,in_band_pct,reachable_terms,reachable_in_band_pct,median_standardized_difference,median_absolute_difference,max_absolute_difference,negligible_terms,median_spearman,median_band_ratio,verdict,indicative_verdict -bird,north,climate,median,2,20,5,90,20,90,0.351,0,0.651,0,1,0.694,not gated (store holds 5 draws), -bryophyte,north,climate,median,1,19,5,94.7,19,94.7,0.671,0,1.81,5,0.991,0.214,not gated (store holds 5 draws), -lichen,north,climate,median,2,38,5,89.5,38,89.5,0.003,0,1.99,17,0.991,0.301,not gated (store holds 5 draws), -mite,north,climate,median,2,38,5,94.7,38,94.7,0.082,0,3.79,20,0.973,0.656,not gated (store holds 5 draws), -vascular_plant,north,climate,median,2,38,5,97.4,38,97.4,0,0,0.12,24,0.982,0.602,not gated (store holds 5 draws), -bird,south,climate,median,2,20,5,90,20,90,0.351,0,0.651,0,1,0.694,not gated (store holds 5 draws), -bryophyte,south,climate,median,1,19,5,94.7,19,94.7,0.671,0,1.81,5,0.991,0.214,not gated (store holds 5 draws), -lichen,south,climate,median,2,38,5,89.5,38,89.5,0.003,0,1.99,17,0.991,0.301,not gated (store holds 5 draws), -mite,south,climate,median,2,38,5,94.7,38,94.7,0.082,0,3.79,20,0.973,0.656,not gated (store holds 5 draws), -vascular_plant,south,climate,median,2,38,5,97.4,38,97.4,0,0,0.12,24,0.982,0.602,not gated (store holds 5 draws), -bird,north,habitat,median,2,178,5,92.7,168,92.3,0.569,0.023,2.82,0,0.989,0.699,not gated (store holds 5 draws), -bryophyte,north,habitat,median,1,94,5,98.9,94,98.9,0.36,0.062,0.256,0,0.987,0.502,not gated (store holds 5 draws), -lichen,north,habitat,median,2,188,5,94.7,188,94.7,0.251,0.038,0.289,0,0.996,0.642,not gated (store holds 5 draws), -mammal,north,habitat,iteration 1,2,448,4,100,436,100,0,0,9.77e-15,0,1,,not gated (trial run), -mite,north,habitat,median,1,94,5,76.6,94,76.6,0.579,0.078,0.673,0,0.993,0.642,not gated (store holds 5 draws), -vascular_plant,north,habitat,median,2,188,5,91.5,188,91.5,0.303,0.034,0.326,0,0.997,0.596,not gated (store holds 5 draws), -bird,south,habitat,median,2,46,5,80.4,40,77.5,0.334,0.021,0.121,0,0.995,0.508,not gated (store holds 5 draws), -bryophyte,south,habitat,median,1,19,5,100,19,100,0.399,0.066,0.267,0,0.991,0.633,not gated (store holds 5 draws), -lichen,south,habitat,median,2,40,5,87.5,40,87.5,0.337,0.048,0.655,1,0.985,0.554,not gated (store holds 5 draws), -mammal,south,habitat,iteration 1,2,126,5,100,120,100,0,0,5.33e-15,0,1,,not gated (trial run), -mite,south,habitat,median,2,40,5,95,40,95,0.175,0.03,0.754,1,0.992,0.581,not gated (store holds 5 draws), -vascular_plant,south,habitat,median,2,40,5,75,40,75,0.585,0.07,0.552,0,0.977,0.566,not gated (store holds 5 draws), +bird,north,climate,median,2,20,100,100,20,100,0,0,2.21e-11,0,1,1,not gated (trial run),pass +bryophyte,north,climate,median,1,19,100,100,19,100,0.035,0,1.4,6,1,1.062,not gated (trial run),pass +lichen,north,climate,median,2,38,100,100,38,100,0,0,0.644,17,0.993,0.879,not gated (trial run),pass +mite,north,climate,median,2,38,100,100,38,100,0,0,1.95,20,0.905,0.953,not gated (trial run),pass +vascular_plant,north,climate,median,2,38,100,100,38,100,0,0,0.266,24,1,0.97,not gated (trial run),pass +bird,south,climate,median,2,20,100,100,20,100,0,0,2.21e-11,0,1,1,not gated (trial run),pass +bryophyte,south,climate,median,1,19,100,100,19,100,0.035,0,1.4,6,1,1.062,not gated (trial run),pass +lichen,south,climate,median,2,38,100,100,38,100,0,0,0.644,17,0.993,0.879,not gated (trial run),pass +mite,south,climate,median,2,38,100,100,38,100,0,0,1.95,20,0.905,0.953,not gated (trial run),pass +vascular_plant,south,climate,median,2,38,100,100,38,100,0,0,0.266,24,1,0.97,not gated (trial run),pass +bird,north,habitat,median,2,178,100,100,168,100,0,0,2.71e-11,0,1,1,not gated (trial run),pass +bryophyte,north,habitat,median,1,94,100,100,94,100,0.072,0.023,0.0808,0,0.997,0.911,not gated (trial run),pass +lichen,north,habitat,median,2,188,100,100,188,100,0.091,0.024,0.118,0,0.999,0.988,not gated (trial run),pass +mammal,north,habitat,iteration 1,2,448,65,100,436,100,0,0,9.77e-15,0,1,,not gated (trial run),pass +mite,north,habitat,median,1,94,100,100,94,100,0.14,0.035,0.148,0,0.999,0.993,not gated (trial run),pass +vascular_plant,north,habitat,median,2,188,100,100,188,100,0.108,0.022,0.125,0,0.999,0.95,not gated (trial run),pass +bird,south,habitat,median,2,46,100,100,40,100,0,0,5.61e-11,0,1,1,not gated (trial run),pass +bryophyte,south,habitat,median,1,19,100,100,19,100,0.047,0.021,0.0601,0,0.993,1.042,not gated (trial run),pass +lichen,south,habitat,median,2,40,100,100,40,100,0.088,0.029,0.278,1,0.994,0.961,not gated (trial run),pass +mammal,south,habitat,iteration 1,2,126,99,100,120,100,0,0,5.33e-15,0,1,,not gated (trial run),pass +mite,south,habitat,median,2,40,100,100,40,100,0.068,0.024,0.464,1,0.991,0.975,not gated (trial run),pass +vascular_plant,south,habitat,median,2,40,100,100,40,100,0.074,0.027,0.184,0,0.997,1.021,not gated (trial run),pass From 3390b7e499469cefa8f3d09b30d397bc7366f747 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 04:18:03 -0600 Subject: [PATCH 08/19] Renumbered setup scripts --- ...ranslation_lookup.R => 04_harmonize_bird_translation_lookup.R} | 0 ...lant_bootstrap_ids.R => 05_harmonize_v2_plant_bootstrap_ids.R} | 0 ...abmiexplorer_results.R => 06_harmonize_abmiexplorer_results.R} | 0 1_code/_setup/{09_harmonize_lookups.R => 07_harmonize_lookups.R} | 0 1_code/_setup/{10_publish_datasets.R => 08_publish_datasets.R} | 0 5 files changed, 0 insertions(+), 0 deletions(-) rename 1_code/_setup/{06_harmonize_bird_translation_lookup.R => 04_harmonize_bird_translation_lookup.R} (100%) rename 1_code/_setup/{07_harmonize_v2_plant_bootstrap_ids.R => 05_harmonize_v2_plant_bootstrap_ids.R} (100%) rename 1_code/_setup/{08_harmonize_abmiexplorer_results.R => 06_harmonize_abmiexplorer_results.R} (100%) rename 1_code/_setup/{09_harmonize_lookups.R => 07_harmonize_lookups.R} (100%) rename 1_code/_setup/{10_publish_datasets.R => 08_publish_datasets.R} (100%) diff --git a/1_code/_setup/06_harmonize_bird_translation_lookup.R b/1_code/_setup/04_harmonize_bird_translation_lookup.R similarity index 100% rename from 1_code/_setup/06_harmonize_bird_translation_lookup.R rename to 1_code/_setup/04_harmonize_bird_translation_lookup.R diff --git a/1_code/_setup/07_harmonize_v2_plant_bootstrap_ids.R b/1_code/_setup/05_harmonize_v2_plant_bootstrap_ids.R similarity index 100% rename from 1_code/_setup/07_harmonize_v2_plant_bootstrap_ids.R rename to 1_code/_setup/05_harmonize_v2_plant_bootstrap_ids.R diff --git a/1_code/_setup/08_harmonize_abmiexplorer_results.R b/1_code/_setup/06_harmonize_abmiexplorer_results.R similarity index 100% rename from 1_code/_setup/08_harmonize_abmiexplorer_results.R rename to 1_code/_setup/06_harmonize_abmiexplorer_results.R diff --git a/1_code/_setup/09_harmonize_lookups.R b/1_code/_setup/07_harmonize_lookups.R similarity index 100% rename from 1_code/_setup/09_harmonize_lookups.R rename to 1_code/_setup/07_harmonize_lookups.R diff --git a/1_code/_setup/10_publish_datasets.R b/1_code/_setup/08_publish_datasets.R similarity index 100% rename from 1_code/_setup/10_publish_datasets.R rename to 1_code/_setup/08_publish_datasets.R From 48da84f14d9221e621d412dcaf425d01744adb87 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 04:18:59 -0600 Subject: [PATCH 09/19] Fix references to setup scripts in documentation and code --- 1_code/_setup/00_mirror_setup_inputs.R | 6 +-- 1_code/_setup/02_validate_test_dataset.R | 6 +-- .../06_harmonize_abmiexplorer_results.R | 26 +++++++------ 1_code/_setup/07_harmonize_lookups.R | 4 +- 1_code/_setup/08_publish_datasets.R | 4 +- 1_code/_setup/README.md | 35 +++++++++--------- 1_code/_setup/run.R | 26 ++++++------- .../exp_000_parity_v2/01_compare_to_v2.R | 2 +- .../experiments/exp_000_parity_v2/README.md | 4 +- 1_code/experiments/exp_000_parity_v2/run.R | 6 +-- .../exp_000_parity_v2/v2_self_agreement.R | 4 +- 1_code/harness/data_load.R | 4 +- 1_code/harness/data_source.R | 4 +- 1_code/harness/predict_grid.R | 2 +- 1_code/harness/species.R | 6 +-- 1_code/methods/resampling/precomputed.R | 4 +- 1_code/modules/README.md | 4 +- 1_code/modules/_shared/plant_group.R | 2 +- 1_code/modules/_shared/standard_specs.R | 2 +- 1_code/modules/birds/spec.R | 4 +- 1_code/modules/birds/standardize.R | 2 +- 1_code/modules/bryophytes/spec.R | 2 +- 1_code/tests/testthat/test-dataset.R | 2 +- 3_output/exp_000_parity_v2/report.md | 2 +- README.md | 10 ++--- code_audit_2026-10-06.md | 37 ++++++++++--------- docs/framework_design.md | 6 +-- docs/getting_started.md | 2 +- docs/reviews/2026-09-28_alignment_review.md | 8 +++- docs/taxon_quirks.md | 6 +-- 30 files changed, 120 insertions(+), 112 deletions(-) diff --git a/1_code/_setup/00_mirror_setup_inputs.R b/1_code/_setup/00_mirror_setup_inputs.R index 4a2430a..3d52e72 100644 --- a/1_code/_setup/00_mirror_setup_inputs.R +++ b/1_code/_setup/00_mirror_setup_inputs.R @@ -29,9 +29,9 @@ # - Not mirrored, deliberately: # - the v2 coefficient outputs on the drives (the bird # coefficient CSVs, COEFS.RData, the mammal coefficient -# tables). Parity is scored against ABMIexploreR (08), so +# tables). Parity is scored against ABMIexploreR (06), so # nothing in _setup/ reads them. -# - _setup/08's species-coefs.RData, which 08 downloads from +# - _setup/06's species-coefs.RData, which 06 downloads from # the public ABMIexploreR repository at a pinned commit. # - 0_data/v2_scripts/, which is tracked in git. # - Run once, from the repository root, by someone who can @@ -259,7 +259,7 @@ writeLines(c( "- `inputs_manifest.csv` gives each file's original location,", " size, md5 and the date it was copied.", "- The originals were left in place; the manifest names them.", - "- 04 and 05's inputs are not here: their output,", + "- The retired 04 and 05's inputs are not here: their output,", " `v2_results/`, is published frozen under `../v2_results/`." ), setup_input("README.md")) diff --git a/1_code/_setup/02_validate_test_dataset.R b/1_code/_setup/02_validate_test_dataset.R index 64078d2..a932d23 100644 --- a/1_code/_setup/02_validate_test_dataset.R +++ b/1_code/_setup/02_validate_test_dataset.R @@ -1258,8 +1258,8 @@ if (file.exists(bird_data_file)) { } ## 3.6.4 Harmonized lookups ---- -# _setup/09's outputs against the files checked above, so a -# lookup left stale by a rebuild of 01 or 06 fails +# _setup/07's outputs against the files checked above, so a +# lookup left stale by a rebuild of 01 or 04 fails lookup_dir <- file.path(data_dir, "lookup") harmonized <- c( "species_queue.csv", "factor_levels.csv", "dataset_manifest.csv", @@ -1272,7 +1272,7 @@ note( "lookups", "harmonized lookups written", all(present), if (all(present)) "" else paste0( "missing ", paste(harmonized[!present], collapse = ", "), - "; run 09_harmonize_lookups.R" + "; run 07_harmonize_lookups.R" ) ) diff --git a/1_code/_setup/06_harmonize_abmiexplorer_results.R b/1_code/_setup/06_harmonize_abmiexplorer_results.R index 8ee573e..3374053 100644 --- a/1_code/_setup/06_harmonize_abmiexplorer_results.R +++ b/1_code/_setup/06_harmonize_abmiexplorer_results.R @@ -30,23 +30,24 @@ # models the harness reproduces). Only the data file is # downloaded, not the package and its dependencies. # -# - Checked against 05's reference on 2026-10-02, at the pinned -# commit: +# - Checked against the retired 05's reference on 2026-10-02, +# at the pinned commit: # - Plants and birds are the same models. Every shared # species and term matches to ~1e-15, except species where -# some v2 draws failed. 05 drops the failed draws (v2_n +# some v2 draws failed. Old 05 drops the failed draws (v2_n # below 100); the package holds 100 finite draws for every # cell, so its median moves slightly for those species. # - The package is the published subset: about 10% fewer # plant species than COEFS.RData, and 124 of 133 birds. # Bryum.All, AMRO and YEWA, in the parity_check set, are # not in it. -# - Mammals are the same models as 05's 2024 coefficient -# tables, presence, abundance and total, north and south, -# to ~1e-16 once back-transformed. The package stores them -# on the link scale (logit for presence, log for the other -# two) where the tables are on the response scale, which -# the harness writes, so they are back-transformed here. +# - Mammals are the same models as old 05's 2024 +# coefficient tables, presence, abundance and total, north +# and south, to ~1e-16 once back-transformed. The package +# stores them on the link scale (logit for presence, log for +# the other two) where the tables are on the response scale, +# which the harness writes, so they are back-transformed +# here. # Its 100 draws are one fit repeated, as v2 fits mammal # habitat once, so they are written as v2_n 1 and the # comparison reads iteration 1, as it does against 05. @@ -115,7 +116,7 @@ for (one in c(source_dir, results_dir)) { } ## 1.4 Name the output columns ---- -# Identical to 05, so the comparison reads either file. +# Identical to old 05, so the comparison reads either file. result_columns <- c( "taxon", "region", "stage", "part", "season", "species", "species_v2", "term", @@ -191,7 +192,7 @@ mammal_parts <- c( # The package stores mammal habitat on the link scale; v2's # tables, and the harness, are on the response scale. Verified -# exact against 05 on 2026-10-02. Mammal climate is on the link +# exact against old 05 on 2026-10-02. Mammal climate is on the link # scale in both, so it is left alone. mammal_inverse_links <- list( presence = stats::plogis, abundance = exp, total = exp @@ -213,7 +214,8 @@ part_of <- function(slug, stage, hurdle = NA) { #' Package Terms Under the Names the Harness Writes #' -#' Each pair was checked on 2026-10-02 against 05's reference: +#' Each pair was checked on 2026-10-02 against old 05's +#' reference: #' the package term's medians equal the v2 term's for every #' shared species in the north. The package collapsed the fen #' age classes and renamed the human-footprint classes; birds diff --git a/1_code/_setup/07_harmonize_lookups.R b/1_code/_setup/07_harmonize_lookups.R index 05baa77..793540a 100644 --- a/1_code/_setup/07_harmonize_lookups.R +++ b/1_code/_setup/07_harmonize_lookups.R @@ -3,7 +3,7 @@ # author: Brendan Casey # created: 2026-10-03 # inputs: -# in 0_data/test_dataset/lookup/ (all written by 01 and 06): +# in 0_data/test_dataset/lookup/ (all written by 01 and 04): # - modelled_species.csv, mammal_modelled_species.csv, # bird_modelled_species.csv # - bird_factor_levels.csv @@ -57,7 +57,7 @@ read_lookup <- function(name) { if (!file.exists(path)) { stop( "Missing ", path, ". Run 01_harmonize_model_ready_v2.R ", - "(and 06 for the bird matrix) first.", + "(and 04 for the bird matrix) first.", call. = FALSE ) } diff --git a/1_code/_setup/08_publish_datasets.R b/1_code/_setup/08_publish_datasets.R index 30396f0..209dc17 100644 --- a/1_code/_setup/08_publish_datasets.R +++ b/1_code/_setup/08_publish_datasets.R @@ -4,7 +4,7 @@ # created: 2026-10-05 # inputs: # - 0_data/test_dataset/, from _setup/01-09, checked by 02 -# - 0_data/v2_results/abmiexplorer/, from _setup/08 +# - 0_data/v2_results/abmiexplorer/, from _setup/06 # outputs: # in //ABMI-DATA2/science/sdmMethodsDev/0_data/ (SDM_SHARE_ROOT # overrides it), for each dataset: @@ -180,7 +180,7 @@ publish_dataset <- function(name, version) { paste0("- R: ", R.version.string), "", "Built by 1_code/_setup/ in the sdmMethodsDev repository and", - "published by 1_code/_setup/10_publish_datasets.R. Never", + "published by 1_code/_setup/08_publish_datasets.R. Never", "edited after publishing; checksums.csv lists every file." ), file.path(partial, "publish_record.md")) diff --git a/1_code/_setup/README.md b/1_code/_setup/README.md index 85bcd14..4591171 100644 --- a/1_code/_setup/README.md +++ b/1_code/_setup/README.md @@ -20,9 +20,10 @@ source("1_code/_setup/run.R") `run.R` runs the steps in dependency order, with on/off switches in section 1.2, and logs timings to `2_pipeline/_setup/run_log.csv`. `00`, -`03` and `10` are off by default. Run order: `01`, `06`, `09`, `02`, -`03`, `07`, `08`, then `10`. There is no `04` or `05`; they were -retired once `08` replaced them. +`03` and `08` are off by default. Run order: `01`, `04`, `07`, `02`, +`03`, `05`, `06`, then `08`. The original `04` and `05` were retired +once `06` replaced them; the later scripts were renumbered on +2026-10-08 to close the gap. ## Scripts @@ -30,17 +31,17 @@ retired once `08` replaced them. | --- | --- | --- | | `00_mirror_setup_inputs.R` | Every external input, at its original location | `setup_inputs/` on ABMI-DATA2, with `inputs_manifest.csv`. Run once; never overwrites | | `01_harmonize_model_ready_v2.R` | The `model_ready_v2` snapshot, mammal camera climate, WildTrax species lookup, v2 prediction matrices, bird `Stratified.Rdata` | `0_data/test_dataset/`: responses, `sites.csv`, `covariates.csv`, `bird_offsets.csv`, and most of `lookup/` | -| `02_validate_test_dataset.R` | The test dataset and the same sources | Nothing; prints a pass / fail tally. Run after `01`, `06` and `09` | +| `02_validate_test_dataset.R` | The test dataset and the same sources | Nothing; prints a pass / fail tally. Run after `01`, `04` and `07` | | `03_rerun_bryophyte_v2_reference.R` | v2 plant project bryophyte data, frozen v2 functions in `0_data/v2_scripts/plants/` | `2_pipeline/v2_reference/`: `bryophyte-species-models.Rdata`, `bryophyte-bootstrap-ids.Rdata`. Takes hours | -| `06_harmonize_bird_translation_lookup.R` | v2's bird `Xn-veg-v2024.Rdata` | `lookup/bird_veg_age_matrix.csv`. Re-run whenever `01` rebuilds `lookup/` | -| `07_harmonize_v2_plant_bootstrap_ids.R` | v2's stored plant draws; `03`'s bryophyte draws | `lookup/v2_bootstrap_ids//.rds`, for `plant_bootstrap = "v2_ids"` | -| `08_harmonize_abmiexplorer_results.R` | ABMIexploreR's `species-coefs.RData` at a pinned commit; bird `birdlist.csv` | `0_data/external/abmiexplorer//`; `0_data/v2_results/abmiexplorer/v2_results.csv` and `v2_results_coverage.csv` | -| `09_harmonize_lookups.R` | `0_data/test_dataset/lookup/` only; offline, seconds | `species_queue.csv`, `factor_levels.csv`, `dataset_manifest.csv`, bird prediction grids | -| `10_publish_datasets.R` | `0_data/test_dataset/`, `0_data/v2_results/` | A new `/` of each on ABMI-DATA2, with `checksums.csv` and `publish_record.md` | +| `04_harmonize_bird_translation_lookup.R` | v2's bird `Xn-veg-v2024.Rdata` | `lookup/bird_veg_age_matrix.csv`. Re-run whenever `01` rebuilds `lookup/` | +| `05_harmonize_v2_plant_bootstrap_ids.R` | v2's stored plant draws; `03`'s bryophyte draws | `lookup/v2_bootstrap_ids//.rds`, for `plant_bootstrap = "v2_ids"` | +| `06_harmonize_abmiexplorer_results.R` | ABMIexploreR's `species-coefs.RData` at a pinned commit; bird `birdlist.csv` | `0_data/external/abmiexplorer//`; `0_data/v2_results/abmiexplorer/v2_results.csv` and `v2_results_coverage.csv` | +| `07_harmonize_lookups.R` | `0_data/test_dataset/lookup/` only; offline, seconds | `species_queue.csv`, `factor_levels.csv`, `dataset_manifest.csv`, bird prediction grids | +| `08_publish_datasets.R` | `0_data/test_dataset/`, `0_data/v2_results/` | A new `/` of each on ABMI-DATA2, with `checksums.csv` and `publish_record.md` | | `run.R` | The scripts above | Runs them in order | | `utils/input_paths.R` | | `setup_input()`: paths inside the input mirror | -After `10`, move the pin in `1_code/harness/data_source.R`. A +After `08`, move the pin in `1_code/harness/data_source.R`. A published version is never overwritten. ## The test dataset @@ -74,16 +75,16 @@ Each overrides a default path. | Variable | Read by | Points at | | --- | --- | --- | -| `SDM_SETUP_INPUT_ROOT` | `00`–`08` | The input mirror | +| `SDM_SETUP_INPUT_ROOT` | `00`–`06` | The input mirror | | `SDM_SNAPSHOT_V2` | `01`, `02` | The `model_ready_v2` snapshot folder | | `SDM_MAMMAL_CAMERA_CLIMATE` | `01` | `abmi-camera-climate_2023.Rdata` | | `SDM_MAMMAL_CLIMATE_PRED` | `01`, `02` | `All Species Climate Predictions.csv` | | `SDM_V2_LOOKUP` | `01` | The v2 folder holding the plant prediction matrices | | `SDM_WT_SPECIES` | `01` | `WildTrax Species Strings.RData` | | `SDM_BIRD_DATA` | `01`, `02` | The bird `Stratified.Rdata` v2 was fitted on | -| `SDM_V2_PROJECT` | `03`, `07` | The v2 plant project (`VegetationModels`) | -| `SDM_V2_BIRD_ROOT` | `06` | The v2 bird project (`BirdModels`) | -| `SDM_V2_BOOT_TAXA`, `SDM_V2_BOOT_SPECIES` | `07` | Comma-separated subsets to copy | -| `SDM_ABMIEXPLORER_SHA` | `08` | The ABMIexploreR commit to download | -| `SDM_V2_BIRD_LOOKUP` | `08` | The v2 bird `birdlist.csv` | -| `SDM_SHARE_ROOT`, `SDM_DATASET_VERSION`, `SDM_PUBLISH` | `10` | Publish root, version folder (default today, `YYYY-MM-DD`), datasets | +| `SDM_V2_PROJECT` | `03`, `05` | The v2 plant project (`VegetationModels`) | +| `SDM_V2_BIRD_ROOT` | `04` | The v2 bird project (`BirdModels`) | +| `SDM_V2_BOOT_TAXA`, `SDM_V2_BOOT_SPECIES` | `05` | Comma-separated subsets to copy | +| `SDM_ABMIEXPLORER_SHA` | `06` | The ABMIexploreR commit to download | +| `SDM_V2_BIRD_LOOKUP` | `06` | The v2 bird `birdlist.csv` | +| `SDM_SHARE_ROOT`, `SDM_DATASET_VERSION`, `SDM_PUBLISH` | `08` | Publish root, version folder (default today, `YYYY-MM-DD`), datasets | diff --git a/1_code/_setup/run.R b/1_code/_setup/run.R index 519de94..854fcb5 100644 --- a/1_code/_setup/run.R +++ b/1_code/_setup/run.R @@ -7,11 +7,11 @@ # (see their headers); most read the input mirror on # ABMI-DATA2 through utils/input_paths.R # outputs: -# - 0_data/test_dataset/, from 01, 06 and 09 -# - 0_data/test_dataset/lookup/v2_bootstrap_ids/, from 07 -# - 0_data/v2_results/abmiexplorer/, from 08 +# - 0_data/test_dataset/, from 01, 04 and 07 +# - 0_data/test_dataset/lookup/v2_bootstrap_ids/, from 05 +# - 0_data/v2_results/abmiexplorer/, from 06 # - 2_pipeline/v2_reference/, from 03 -# - a new published version on ABMI-DATA2, from 10, only if +# - a new published version on ABMI-DATA2, from 08, only if # switched on # - 2_pipeline/_setup/run_log.csv: per step, start, end, # minutes and whether it finished @@ -24,7 +24,7 @@ # someone who can reach the original drives. # - 03 re-runs the v2 bryophyte models: hours, and its # output only changes if its sources do. -# - 10 publishes a new version. Run it deliberately, after +# - 08 publishes a new version. Run it deliberately, after # checking 02's tally, then move the pin in # 1_code/harness/data_source.R. # - Each script runs in its own environment; an error stops @@ -41,18 +41,18 @@ # Base R only; each script loads its own. ## 1.2 Choose the steps ---- -# In run order: 09 reads 01's and 06's lookups, 02 checks the -# finished dataset, 07 reads 03's bryophyte draws. +# In run order: 07 reads 01's and 04's lookups, 02 checks the +# finished dataset, 05 reads 03's bryophyte draws. steps <- c( "00_mirror_setup_inputs.R" = FALSE, "01_harmonize_model_ready_v2.R" = TRUE, - "06_harmonize_bird_translation_lookup.R" = TRUE, - "09_harmonize_lookups.R" = TRUE, + "04_harmonize_bird_translation_lookup.R" = TRUE, + "07_harmonize_lookups.R" = TRUE, "02_validate_test_dataset.R" = TRUE, "03_rerun_bryophyte_v2_reference.R" = FALSE, - "07_harmonize_v2_plant_bootstrap_ids.R" = TRUE, - "08_harmonize_abmiexplorer_results.R" = TRUE, - "10_publish_datasets.R" = FALSE + "05_harmonize_v2_plant_bootstrap_ids.R" = TRUE, + "06_harmonize_abmiexplorer_results.R" = TRUE, + "08_publish_datasets.R" = FALSE ) ## 1.3 Check the paths ---- @@ -96,7 +96,7 @@ log_path <- file.path(log_dir, "run_log.csv") #' @return TRUE, invisibly; stops if the script errors. #' #' @example # Example usage of the function -#' # run_step("09_harmonize_lookups.R", setup_dir, log_path) +#' # run_step("07_harmonize_lookups.R", setup_dir, log_path) run_step <- function(script, setup_dir, log_path) { # Step 1: Announce and time the step message("\n== ", script, " (", format(Sys.time(), "%H:%M"), ")") diff --git a/1_code/experiments/exp_000_parity_v2/01_compare_to_v2.R b/1_code/experiments/exp_000_parity_v2/01_compare_to_v2.R index 6195a41..b5f83e9 100644 --- a/1_code/experiments/exp_000_parity_v2/01_compare_to_v2.R +++ b/1_code/experiments/exp_000_parity_v2/01_compare_to_v2.R @@ -7,7 +7,7 @@ # n_bootstraps, v2_bootstraps, focal_species # - `results$coefficient_summary`, from collect_results() # - in config$v2_reference_dir: -# - v2_results.csv, built by _setup/08 from the pinned +# - v2_results.csv, built by _setup/06 from the pinned # ABMIexploreR coefficients # outputs: # - in out_dir/tables/: parity_terms.csv, parity_summary.csv diff --git a/1_code/experiments/exp_000_parity_v2/README.md b/1_code/experiments/exp_000_parity_v2/README.md index 7d4736c..8945636 100644 --- a/1_code/experiments/exp_000_parity_v2/README.md +++ b/1_code/experiments/exp_000_parity_v2/README.md @@ -35,7 +35,7 @@ the gate, set `species = NULL` and `n_bootstraps = 100`. `utils/parity_targets.R` holds the targets the compare step reads. `v2_self_agreement.R` is not part of `run.R`: run it once, after -`_setup/03` and `_setup/08`, to write +`_setup/03` and `_setup/06`, to write `tables/v2_self_agreement.csv` and `v2_self_agreement_summary.csv`. ## Inputs and outputs @@ -69,7 +69,7 @@ If this table and the specs disagree, the specs are right. ## The v2 reference -`v2_results.csv` is built by `_setup/08` from ABMIexploreR's published +`v2_results.csv` is built by `_setup/06` from ABMIexploreR's published coefficients (`data/species-coefs.RData`), pinned to commit `848eeed`. On 2026-10-02 it matched the retired by-hand build from the network drives to about 1e-15 on every shared species and term. Gaps: diff --git a/1_code/experiments/exp_000_parity_v2/run.R b/1_code/experiments/exp_000_parity_v2/run.R index 084046f..ef43a41 100644 --- a/1_code/experiments/exp_000_parity_v2/run.R +++ b/1_code/experiments/exp_000_parity_v2/run.R @@ -60,7 +60,7 @@ config <- experiment_config( seed = 20260909, # "spatial_block" draws v2's plant bootstrap afresh; - # "v2_ids" replays v2's stored draws (needs _setup/07). + # "v2_ids" replays v2's stored draws (needs _setup/05). plant_bootstrap = "spatial_block", # NULL fits each spec's v2 candidate sets @@ -75,14 +75,14 @@ config <- experiment_config( ## 1.3 The v2 reference ---- # ABMIexploreR's published coefficients, pinned to a commit and -# harmonized by _setup/08 +# harmonized by _setup/06 config$v2_reference <- "abmiexplorer" config$v2_reference_dir <- file.path( v2_results_dir(), "abmiexplorer" ) config$v2_reference_builder <- - "1_code/_setup/08_harmonize_abmiexplorer_results.R" + "1_code/_setup/06_harmonize_abmiexplorer_results.R" # 2. Run ---- # `fit = FALSE` re-summarizes existing stores without fitting diff --git a/1_code/experiments/exp_000_parity_v2/v2_self_agreement.R b/1_code/experiments/exp_000_parity_v2/v2_self_agreement.R index 7113bae..6967d46 100644 --- a/1_code/experiments/exp_000_parity_v2/v2_self_agreement.R +++ b/1_code/experiments/exp_000_parity_v2/v2_self_agreement.R @@ -7,7 +7,7 @@ # from 1_code/_setup/03_rerun_bryophyte_v2_reference.R # - abmiexplorer/v2_results.csv from the published v2 results # (see 1_code/harness/data_source.R), the bryophyte climate -# rows, from _setup/08. These are v2's original run: they +# rows, from _setup/06. These are v2's original run: they # match v2's COEFS.RData to ~1e-15 # outputs: # in 3_output/exp_000_parity_v2/tables/: @@ -40,7 +40,7 @@ # - Climate only: the regenerated reference has no habitat # stage. The rate is assumed to carry to the plant habitat # stage; that is an assumption, stated in the README. -# - Run once, from the repository root, after _setup/03 and 08. +# - Run once, from the repository root, after _setup/03 and 06. # Not part of run.R's sequence. # --- diff --git a/1_code/harness/data_load.R b/1_code/harness/data_load.R index 80762a8..7abaa94 100644 --- a/1_code/harness/data_load.R +++ b/1_code/harness/data_load.R @@ -12,7 +12,7 @@ # outputs: none; returns objects in memory # notes: # - Taxon-agnostic: file locations and covariate keys come from -# lookup/dataset_manifest.csv (_setup/09). The key is +# lookup/dataset_manifest.csv (_setup/07). The key is # `_` for mammals, whose north and south files # hold different values for the same deployment. # - Reads are column-selective (covariates.csv is ~218 MB, 457 @@ -50,7 +50,7 @@ dataset_manifest <- function(data_dir) { "Dataset manifest not found: ", path, " -Run 1_code/_setup/09_harmonize_lookups.R first.", +Run 1_code/_setup/07_harmonize_lookups.R first.", call. = FALSE ) } diff --git a/1_code/harness/data_source.R b/1_code/harness/data_source.R index c3d90ed..db0b579 100644 --- a/1_code/harness/data_source.R +++ b/1_code/harness/data_source.R @@ -13,7 +13,7 @@ # outputs: none; returns the folder to read # notes: # - Runs read the copies published by -# _setup/10_publish_datasets.R, so only maintainers run +# _setup/08_publish_datasets.R, so only maintainers run # _setup/. sdm_published$versions pins the version read; # published versions are never overwritten. # - The environment variables redirect to a local copy or to @@ -110,7 +110,7 @@ test_dataset_dir <- function(data_dir = NULL, check = TRUE) { #' Resolve the v2 Results Folder #' -#' The parity reference, from _setup/08, is in abmiexplorer/. +#' The parity reference, from _setup/06, is in abmiexplorer/. #' Files at the top level of the 2026-10-05 version are the #' retired network-drive build; nothing reads them. #' diff --git a/1_code/harness/predict_grid.R b/1_code/harness/predict_grid.R index 5b9e5cf..655ae95 100644 --- a/1_code/harness/predict_grid.R +++ b/1_code/harness/predict_grid.R @@ -11,7 +11,7 @@ # predicting onto it gives the per-habitat effect v2 reports. # Every engine can predict (a tree has no coefficients), so # grids are how engines are compared. Bird grids are rebuilt -# by _setup/09 from v2's coefficient translation matrix. +# by _setup/07 from v2's coefficient translation matrix. # - v2's later coefficient adjustments (e.g. plant stand-age # splines) are in the coefficients, not the grid. # --- diff --git a/1_code/harness/species.R b/1_code/harness/species.R index 3d8c898..56ced7b 100644 --- a/1_code/harness/species.R +++ b/1_code/harness/species.R @@ -4,11 +4,11 @@ # created: 2026-09-09 # inputs: # in the test dataset's lookup/ (see data_source.R): -# - species_queue.csv, from _setup/09_harmonize_lookups.R +# - species_queue.csv, from _setup/07_harmonize_lookups.R # outputs: none; returns objects in memory # notes: # - One queue for every taxon, flattened from the taxon leads' -# lookups by _setup/09. `tier` separates model classes where a +# lookups by _setup/07. `tier` separates model classes where a # taxon has them (mammals) and is "modelled" elsewhere; # `season` is empty except for mammals; `order` keeps v2's # species order. @@ -36,7 +36,7 @@ species_catalogue <- function(data_dir, taxon = NULL) { if (!file.exists(path)) { stop( "Species queue not found:\n ", path, - "\nRun 1_code/_setup/09_harmonize_lookups.R first.", + "\nRun 1_code/_setup/07_harmonize_lookups.R first.", call. = FALSE ) } diff --git a/1_code/methods/resampling/precomputed.R b/1_code/methods/resampling/precomputed.R index 8f104f2..2e22261 100644 --- a/1_code/methods/resampling/precomputed.R +++ b/1_code/methods/resampling/precomputed.R @@ -13,7 +13,7 @@ # - Replays v2's stored draws, so parity can be numerical rather # than distributional. Birds: one table keyed on `surveyid`. # Plant groups: per species, as v2 drew them (written by -# _setup/07_harmonize_v2_plant_bootstrap_ids.R). +# _setup/05_harmonize_v2_plant_bootstrap_ids.R). # - The seed is ignored. # --- @@ -125,7 +125,7 @@ read_stored_draws <- function(data_dir, taxon, species, per_species) { stop( "No stored v2 bootstrap ids for ", taxon, " ", species, ":\n ", path, - "\nRun 1_code/_setup/07_harmonize_v2_plant_bootstrap_ids.R", + "\nRun 1_code/_setup/05_harmonize_v2_plant_bootstrap_ids.R", " for this species, or use the spatial_block scheme.", call. = FALSE ) diff --git a/1_code/modules/README.md b/1_code/modules/README.md index 45fad3b..7714b7e 100644 --- a/1_code/modules/README.md +++ b/1_code/modules/README.md @@ -62,7 +62,7 @@ are also accepted, as settings for that method. 2. Extend `_setup/01` to write the taxon's response, covariates, lookups, and any grid or stored draws; extend `_setup/02` to trace them to the source. -3. Add the taxon's species queue and manifest rows to `_setup/09`, +3. Add the taxon's species queue and manifest rows to `_setup/07`, and re-run it. 4. Splice the v2 candidate formulas into `harness/model_sets.R`, verbatim. @@ -70,7 +70,7 @@ are also accepted, as settings for that method. `birds/spec.R` or `mammals/spec.R`, and add the run to `standard_specs()`. If v2 does something no registered method covers, add one to [`methods/`](../methods/README.md). -6. Add the taxon's published v2 results to `_setup/08`, if +6. Add the taxon's published v2 results to `_setup/06`, if ABMIexploreR publishes them. 7. Check that `validate_spec()` passes and `Rscript 1_code/tests/run_tests.R` runs clean. Record each diff --git a/1_code/modules/_shared/plant_group.R b/1_code/modules/_shared/plant_group.R index f7c3fff..661659f 100644 --- a/1_code/modules/_shared/plant_group.R +++ b/1_code/modules/_shared/plant_group.R @@ -32,7 +32,7 @@ #' this taxon's v2 reference comes from, appended to the spec #' notes. Bryophytes differ from the other three. #' @param bootstrap Character. "spatial_block" draws afresh; -#' "v2_ids" replays v2's stored draws (_setup/07), making +#' "v2_ids" replays v2's stored draws (_setup/05), making #' parity numerical. #' @return A spec list, as run_spec() consumes. #' diff --git a/1_code/modules/_shared/standard_specs.R b/1_code/modules/_shared/standard_specs.R index e1cf499..9334b25 100644 --- a/1_code/modules/_shared/standard_specs.R +++ b/1_code/modules/_shared/standard_specs.R @@ -24,7 +24,7 @@ #' @param plant_bootstrap Character. "spatial_block" draws v2's #' plant bootstrap afresh, so parity is distributional; #' "v2_ids" replays the draws v2 stored (needs -#' _setup/07_harmonize_v2_plant_bootstrap_ids.R run for every +#' _setup/05_harmonize_v2_plant_bootstrap_ids.R run for every #' species in the run). #' @return A named list of specs, one per run. #' diff --git a/1_code/modules/birds/spec.R b/1_code/modules/birds/spec.R index 51145c6..3eebcc3 100644 --- a/1_code/modules/birds/spec.R +++ b/1_code/modules/birds/spec.R @@ -47,7 +47,7 @@ bird_spec <- function() { regions = list( north = list( filter = ~ useNorth == 1, - # One row per habitat type, rebuilt by _setup/09 from + # One row per habitat type, rebuilt by _setup/07 from # v2's coefficient translation matrix grid = "bird_north", term_block = "veg", @@ -57,7 +57,7 @@ bird_spec <- function() { ), south = list( filter = ~ useSouth == 1, - # One row per habitat type, rebuilt by _setup/09 from + # One row per habitat type, rebuilt by _setup/07 from # v2's coefficient translation matrix grid = "bird_south", term_block = "soil", diff --git a/1_code/modules/birds/standardize.R b/1_code/modules/birds/standardize.R index 772da70..22a46d2 100644 --- a/1_code/modules/birds/standardize.R +++ b/1_code/modules/birds/standardize.R @@ -6,7 +6,7 @@ # in the test dataset (see harness/data_source.R): # - covariates.csv, the bird rows # - lookup/bird_veg_age_matrix.csv, from -# 1_code/_setup/06_harmonize_bird_translation_lookup.R +# 1_code/_setup/04_harmonize_bird_translation_lookup.R # - lookup/covariate_columns.csv, lookup/bird_factor_levels.csv # outputs: none; returns objects in memory # notes: diff --git a/1_code/modules/bryophytes/spec.R b/1_code/modules/bryophytes/spec.R index 8183d7a..72b61e1 100644 --- a/1_code/modules/bryophytes/spec.R +++ b/1_code/modules/bryophytes/spec.R @@ -12,7 +12,7 @@ # - The published bryophyte model file is unusable (every entry # is a `could not find function "model.avg"` error; 3 stored # draws, not 100). The parity reference is ABMIexploreR's -# arrays (_setup/08), matching v2's COEFS.RData to ~1e-15. +# arrays (_setup/06), matching v2's COEFS.RData to ~1e-15. # _setup/03 regenerated the climate stage into # 2_pipeline/v2_reference/ for v2_self_agreement.R. # --- diff --git a/1_code/tests/testthat/test-dataset.R b/1_code/tests/testthat/test-dataset.R index 597b45a..0cd3aef 100644 --- a/1_code/tests/testthat/test-dataset.R +++ b/1_code/tests/testthat/test-dataset.R @@ -34,7 +34,7 @@ test_that("every taxon in the queue is in the manifest", { test_that("the species queue matches the source lookups", { # The counts the three source schemas give, checked against - # the one queue _setup/09 wrote from them + # the one queue _setup/07 wrote from them plants <- data.table::fread( file.path(data_dir, "lookup", "modelled_species.csv") ) diff --git a/3_output/exp_000_parity_v2/report.md b/3_output/exp_000_parity_v2/report.md index 794fcc2..db12d46 100644 --- a/3_output/exp_000_parity_v2/report.md +++ b/3_output/exp_000_parity_v2/report.md @@ -43,7 +43,7 @@ stated. Change it there, not here. ## v2 references -Scored against `abmiexplorer`, built by `1_code/_setup/08_harmonize_abmiexplorer_results.R`. What it holds, from `v2_results_coverage.csv`: +Scored against `abmiexplorer`, built by `1_code/_setup/06_harmonize_abmiexplorer_results.R`. What it holds, from `v2_results_coverage.csv`: | source_label | reachable | rows | species | note | | --- | --- | --- | --- | --- | diff --git a/README.md b/README.md index c9b7bea..18cc846 100644 --- a/README.md +++ b/README.md @@ -25,7 +25,7 @@ final species models or reporting products. | Component | State | | --- | --- | | Test dataset | Built for bryophytes, lichens, soil mites, vascular plants, mammals and birds. Validated by `_setup/02`. Published to ABMI-DATA2, version 2026-10-05 | -| v2 reference | ABMIexploreR's published coefficients, harmonized by `_setup/08` | +| v2 reference | ABMIexploreR's published coefficients, harmonized by `_setup/06` | | Pipeline | Built: plug-in methods, parallel species, final-model metrics and habitat grids for every taxon, experiment runner, contract tests | | Taxon specs | Every stage of every taxon runs. Each spec's `v2_coverage` states what it reproduces; `report.md` prints it | | exp_000 (v2 parity) | A 100-draw run on the `parity_check` species passed all 22 taxon × region × stage rows on 2026-10-03 (see the [exp_000 README](1_code/experiments/exp_000_parity_v2/README.md)). The committed tables are from a later 5-draw trial. Not yet a gate: see [Parity gate](#parity-gate) | @@ -36,8 +36,8 @@ final species models or reporting products. sdmMethodsDev/ ├── 0_data/ # gitignored except v2_scripts/ and *.R │ ├── test_dataset/ # _setup/ output; runs read the published copy -│ ├── v2_results/ # the v2 parity reference, from _setup/08 -│ ├── external/ # downloaded sources (ABMIexploreR), from _setup/08 +│ ├── v2_results/ # the v2 parity reference, from _setup/06 +│ ├── external/ # downloaded sources (ABMIexploreR), from _setup/06 │ ├── covariates/ # reserved; empty │ └── v2_scripts/ # v2 scripts as received; reference only ├── 1_code/ @@ -45,7 +45,7 @@ sdmMethodsDev/ │ ├── methods/ # engines, selection rules, resampling, metrics │ ├── modules/ # one v2 spec per taxon; _shared/ for common code │ ├── experiments/ # one folder per question; _template/, _shared/ -│ ├── _setup/ # 00-10: build, check and publish the dataset +│ ├── _setup/ # 00-08: build, check and publish the dataset │ ├── tests/ # contract tests and the store comparison │ └── _scratch.R # dated workspace for exploration ├── 2_pipeline/ # result stores and intermediates; gitignored @@ -226,7 +226,7 @@ script, ≤70-character lines, and tidyverse style. | Item | Convention | Example | | --- | --- | --- | | Experiments | `exp_NNN_short_description`, the same in `1_code/experiments/`, `2_pipeline/` and `3_output/` | `exp_001_xgboost` | -| Sequenced scripts | `NN_` run order; entry points are `run.R` | `08_harmonize_abmiexplorer_results.R` | +| Sequenced scripts | `NN_` run order; entry points are `run.R` | `06_harmonize_abmiexplorer_results.R` | | Taxon slugs | As the data files name them | `vascular_plant`, `mite`, `bird` | | Module folders | Plural taxon name | `vascular_plants/`, `soil_mites/` | diff --git a/code_audit_2026-10-06.md b/code_audit_2026-10-06.md index 729849d..0bc4cf5 100644 --- a/code_audit_2026-10-06.md +++ b/code_audit_2026-10-06.md @@ -19,8 +19,9 @@ parity gate); those are not edited without separate approval. matches the repo's base-R/data.table, no-pipe convention, so nothing is flagged. - Sequenced naming: `_setup/` runs 00–03 and 06–10. The 04/05 gap is - deliberate history, since 08 says it replaced the old 04/05. There - are no prefix collisions and no `MM_NN_` staging in use. + deliberate history, since 08 says it replaced the old 04/05. + (Renumbered 00–08 on 2026-10-08; references below use the new + numbers.) There are no prefix collisions and no `MM_NN_` staging in use. - Errors: **0 high, 1 medium, 7 low**, plus 4 informational items that need no change. - Deprecated candidates: **1** (`1_code/_scratch.R`, low @@ -30,18 +31,18 @@ parity gate); those are not edited without separate approval. | # | file | line | issue | severity | proposed fix | |---|------|------|-------|----------|--------------| -| E1 | `1_code/_setup/run.R` | 49–59 | Step defaults contradict the header (lines 21–29: "defaults rebuild everything local and publish nothing"; 00, 03 and 10 off). In the code every step is `FALSE` except `10_publish_datasets.R = TRUE`, so sourcing `run.R` publishes whatever is in `0_data/` as today's version, with no rebuild and no 02 tally. 10 refuses to overwrite an existing version, which limits the damage. | medium | Set the defaults to match the header: 01, 06, 09, 02, 07 and 08 `TRUE`; 00, 03 and 10 `FALSE`. (Alternative: only set 10 to `FALSE`. See J1.) | +| E1 | `1_code/_setup/run.R` | 49–59 | Step defaults contradict the header (lines 21–29: "defaults rebuild everything local and publish nothing"; 00, 03 and 08 off). In the code every step is `FALSE` except `08_publish_datasets.R = TRUE`, so sourcing `run.R` publishes whatever is in `0_data/` as today's version, with no rebuild and no 02 tally. 08 refuses to overwrite an existing version, which limits the damage. | medium | Set the defaults to match the header: 01, 04, 07, 02, 05 and 06 `TRUE`; 00, 03 and 08 `FALSE`. (Alternative: only set 08 to `FALSE`. See J1.) | | E2 | `1_code/experiments/exp_000_parity_v2/02_plot_parity.R` ⚠ exp_000 | 399 | A runtime `message()` tells the user to "rerun `02_compare_to_v2.R`", but the script is `01_compare_to_v2.R`. | low | Change the string to `01_compare_to_v2.R`. Message text only; no change to outputs. | | E3 | `1_code/experiments/exp_000_parity_v2/v2_self_agreement.R` ⚠ exp_000 | 29 | Header comment says "Scored exactly as `02_compare_to_v2.R`"; the file is `01_`. | low | Fix the comment. | | E4 | `1_code/_setup/01_harmonize_model_ready_v2.R` | 2384 | Comment cites `check_prediction_terms()`, which no longer exists anywhere in the repo. | low | Reword to "found later, at prediction time" without naming a function (the successor is not certain). | | E5 | `1_code/harness/result.R` | 1–10 | The header has no `inputs:` field (template §5.1). | low | Add `# inputs: none; writes to the store directory it is given`. | -| E6 | `1_code/_setup/07_harmonize_v2_plant_bootstrap_ids.R:147`, `harness/spec.R:590`, `modules/birds/standardize.R:234`, `experiments/exp_000_parity_v2/utils/parity_targets.R:167` ⚠ exp_000 | — | Single lines over the 70-character limit. | low | Re-wrap each line. Line breaks only; no change to the code's logic. | +| E6 | `1_code/_setup/05_harmonize_v2_plant_bootstrap_ids.R:147`, `harness/spec.R:590`, `modules/birds/standardize.R:234`, `experiments/exp_000_parity_v2/utils/parity_targets.R:167` ⚠ exp_000 | — | Single lines over the 70-character limit. | low | Re-wrap each line. Line breaks only; no change to the code's logic. | | E7 | `1_code/tests/testthat/test-*.R` (5 files) | 1 | No standard header and no `# End of script ----`. | low | See J5. Testthat files commonly omit headers, so this needs a decision. | | E8 | `1_code/_scratch.R` | 30–33 | Code sits *after* `# End of script ----`. It holds a hard-coded UNC path to the old `science\sc\sdmMethodsDev\...` share and a line over 70 characters. | low | See J6 and the deprecated table. | | I1 | `0_data/v2_scripts/mammals/north-models/archive/04 Basic Models Figures Maps.R` | 1465 | Parse error: unexpected `}`. | info | **No change** (`v2_scripts/` is off-limits). Recorded for taxon leads. | | I2 | `1_code/harness/model_sets.R` | 154–200 (57 lines) | Lines over 70 characters. These are v2 habitat formula strings, spliced verbatim. | info | No change. Splitting them hurts the line-by-line match with v2. | | I3 | `1_code/harness/model_sets.R` | 156 | `TreedFen + + NonTreedFen`. The doubled `+` is copied from v2 (`02a/b/c/d_hierarchical-models-*.R:102`) and is a harmless unary plus. | info | No change, to keep fidelity with v2. | -| I4 | `%||%` defined in `harness/spec.R:683`, `harness/new_experiment.R:345` (guarded), `_setup/07…:82`, `tests/compare_stores.R:166` | — | Duplicate definitions. All four are identical, and base R ≥ 4.4 also provides `%||%`. The other duplicated names (`combine`, `failed`, `table_of`, `take_block`, `rows`) are local to their functions, so they never collide. | info | No change. | +| I4 | `%||%` defined in `harness/spec.R:683`, `harness/new_experiment.R:345` (guarded), `_setup/05…:82`, `tests/compare_stores.R:166` | — | Duplicate definitions. All four are identical, and base R ≥ 4.4 also provides `%||%`. The other duplicated names (`combine`, `failed`, `table_of`, `take_block`, `rows`) are local to their functions, so they never collide. | info | No change. | ## Deprecated candidates @@ -62,7 +63,7 @@ Nothing else qualifies: - **J1. `_setup/run.R` defaults (E1).** Should the defaults restore the header's stated behaviour (rebuild everything local), or just - turn 10 off? The current state looks like a leftover from the + turn 08 off? The current state looks like a leftover from the 2026-10-05 publish. - **J2. Committed exp_000 summaries are from a 5-draw plumbing run.** `3_output/exp_000_parity_v2/run_record.md` records @@ -78,7 +79,7 @@ Nothing else qualifies: v2 runs of the same code on the same data give different coefficients. `v2_self_agreement.R` measures how far apart two such runs are. The first is v2's original bryophyte climate - stage, as published in ABMIexploreR (from `_setup/08`). The + stage, as published in ABMIexploreR (from `_setup/06`). The second is `_setup/03`'s re-run of the frozen v2 functions, in `2_pipeline/v2_reference/`. It scores them against each other with the gate's own statistics, in both directions: @@ -104,18 +105,18 @@ Nothing else qualifies: - *Limits.* It covers only the bryophyte climate stage; applying the same thresholds to the habitat and bird stages is an assumption. Re-running it needs `_setup/03` (hours) and the - gitignored `2_pipeline/v2_reference/`. `_setup/07`'s `v2_ids` + gitignored `2_pipeline/v2_reference/`. `_setup/05`'s `v2_ids` option also depends on 03. - *Where it runs.* By hand, from the repo root: `source("1_code/experiments/exp_000_parity_v2/v2_self_agreement.R")`. - Its header says "Run once … after _setup/03 and 08. Not part of + Its header says "Run once … after _setup/03 and 06. Not part of run.R's sequence". It is not one of `run.R`'s `script_step()`s (compare, plot, report). - *Should it join the exp_000 pipeline?* No. Its folder is right (it calibrates exp_000's gate), but it should not be a `run.R` step: 1. It reads no harness result. Its output changes only when - the v2 reference changes (`_setup/03` or `08`), not when + the v2 reference changes (`_setup/03` or `06`), not when exp_000 runs, so every run would recompute an identical table. 2. Its key input, `2_pipeline/v2_reference/…Rdata`, is local @@ -126,7 +127,7 @@ Nothing else qualifies: 3. Moving it to `_setup/` breaks the rule that `_setup` is fixed and that experiments own their scripts. A cleaner long-term option, if wanted, is outside this audit. - `_setup/10` could publish 03's re-run inside `v2_results/`, and + `_setup/08` could publish 03's re-run inside `v2_results/`, and the script could read it via `v2_results_dir()`. It could then become an optional step that anyone can run. - *Recommendation.* No code change. Either run it once and commit @@ -175,11 +176,11 @@ the `setup_inputs` mirror via `_setup/utils/input_paths.R`. | `_setup/01_harmonize_model_ready_v2.R` | v2 snapshot → harmonized CSVs | SI → `0_data/test_dataset/` | | `_setup/02_validate_test_dataset.R` | Pass/fail tally of the dataset | `0_data/test_dataset/`, SI → console | | `_setup/03_rerun_bryophyte_v2_reference.R` | Re-run the v2 bryophyte models (sources `v2_scripts/plants/*functions.R`) | SI → `2_pipeline/v2_reference/` | -| `_setup/06_…bird_translation_lookup.R` | Bird coefficient translation lookup | SI → `test_dataset/lookup/` | -| `_setup/07_…plant_bootstrap_ids.R` | v2's stored plant bootstrap ids | SI, v2_reference → `lookup/v2_bootstrap_ids/` | -| `_setup/08_…abmiexplorer_results.R` | ABMIexploreR coefficients at a pinned commit | GitHub → `0_data/v2_results/abmiexplorer/` | -| `_setup/09_harmonize_lookups.R` | Cross-taxa lookups | 01/06 outputs → `lookup/` | -| `_setup/10_publish_datasets.R` | Publish a versioned copy with checksums | `0_data/` → ABMI-DATA2 | +| `_setup/04_…bird_translation_lookup.R` | Bird coefficient translation lookup | SI → `test_dataset/lookup/` | +| `_setup/05_…plant_bootstrap_ids.R` | v2's stored plant bootstrap ids | SI, v2_reference → `lookup/v2_bootstrap_ids/` | +| `_setup/06_…abmiexplorer_results.R` | ABMIexploreR coefficients at a pinned commit | GitHub → `0_data/v2_results/abmiexplorer/` | +| `_setup/07_harmonize_lookups.R` | Cross-taxa lookups | 01/04 outputs → `lookup/` | +| `_setup/08_publish_datasets.R` | Publish a versioned copy with checksums | `0_data/` → ABMI-DATA2 | | `_setup/utils/input_paths.R` | `setup_input()` resolver | — | | `harness/harness.R` | `load_framework()`: sources harness, then methods, then modules, then experiments/_shared | all of those | | `harness/{registry,cache,data_source,spec,data_load,covariate_sets,species,model_sets,resample,engines,selection,eval_metrics,predict_grid,result,run_record,run_model,summarise,compare,experiment,new_experiment}.R` | Taxon-agnostic pipeline (loaded in this order) | TD/V2R → `2_pipeline//`, `3_output//` | @@ -224,9 +225,9 @@ the `setup_inputs` mirror via `_setup/utils/input_paths.R`. `run_model.R:555` (`load_worker`). exp_000's 01–03 run through `experiment.R:556` (`sys.source`). - **Other `source()` edges**: - - `_setup/{01,02,03,06,07,08}` → `_setup/utils/input_paths.R` + - `_setup/{01,02,03,04,05,06}` → `_setup/utils/input_paths.R` - `00` → `input_paths.R` (via `helper`) - - `10` → `harness/data_source.R` (via `resolver`) + - `08` → `harness/data_source.R` (via `resolver`) - `03` → `0_data/v2_scripts/plants/{hierarchical-model_functions,bootstrapping_functions}.R` - `v2_self_agreement.R` → `parity_targets.R` and `data_source.R` - `exp_002/run.R` → `exp_002/01_…R` diff --git a/docs/framework_design.md b/docs/framework_design.md index 4cb6726..6853be7 100644 --- a/docs/framework_design.md +++ b/docs/framework_design.md @@ -137,7 +137,7 @@ be carried into a later stage, and be projected onto the grid. ### The data is described, not assumed `0_data/test_dataset/lookup/dataset_manifest.csv`, written by -`_setup/09`, names each taxon's response, offset and grid files, its +`_setup/07`, names each taxon's response, offset and grid files, its key in `covariates.csv`, and its stored draws. The species queue and factor levels are one table each for every taxon. The harness reads file locations from the manifest and nowhere else, so a new taxon is @@ -228,7 +228,7 @@ makes a GLM run and a BRT run comparable. projected onto the grid: the averaged or combined one where a rule combines candidates, not the best single candidate. Every taxon has a grid; the bird grids are v2's coefficient translation matrix rebuilt -in covariate space by `_setup/09`. Coefficients cannot compare a GLM to +in covariate space by `_setup/07`. Coefficients cannot compare a GLM to a boosted tree — a tree has no `Peatland` coefficient — but every engine can predict onto the 43 rows of the vegetation prediction matrix or the 16 of the soil matrix. Comparing there keeps the comparison on the @@ -477,7 +477,7 @@ It sits on a regularization axis. A Bayesian framework comparison needs 5a. **Built (2026-10-03).** The plug-in method layer (`1_code/methods/`, the registry, `validate_spec()`, `check_engine()`); the dataset manifest and harmonized lookups - (`_setup/09`); parallel species with byte-identical shards; + (`_setup/07`); parallel species with byte-identical shards; metrics and grids from each stage's final model, and grids for every taxon; `experiment_config()` and `run_experiment()`; the experiment template and `compare_experiments()`; contract tests. diff --git a/docs/getting_started.md b/docs/getting_started.md index e6b4594..8ba99f6 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -639,7 +639,7 @@ standard_specs <- function(plant_bootstrap = "spatial_block") { A new taxon also needs data. The full sequence is in the [modules README][modules-add]: v2 scripts into -`0_data/v2_scripts/`, `_setup/01`, `02`, `09`, and `08` extended, +`0_data/v2_scripts/`, `_setup/01`, `02`, `07`, and `06` extended, candidate formulas spliced into `model_sets.R`, and each taxon-specific behaviour recorded in [`docs/taxon_quirks.md`][quirks]. Those `_setup/` steps are diff --git a/docs/reviews/2026-09-28_alignment_review.md b/docs/reviews/2026-09-28_alignment_review.md index cc592bb..010d0ac 100644 --- a/docs/reviews/2026-09-28_alignment_review.md +++ b/docs/reviews/2026-09-28_alignment_review.md @@ -8,6 +8,10 @@ and the v2 reference code in `0_data/v2_scripts/`. **Method:** Static reading of the code and comparison with the v2 source, the committed outputs in `3_output/exp_000_parity_v2/`, and `2_pipeline/exp_000_parity_v2/run_log.csv`. Nothing was re-run. +**Note (2026-10-08):** `_setup/` was renumbered 00–08. The "Done" +cells in the action table use the new numbers; every other +`_setup/05` below is the retired v2-reference script, since +replaced by `_setup/06_harmonize_abmiexplorer_results.R`. --- @@ -281,7 +285,7 @@ step has an acceptance check. | 1.2 | Point `02_compare_to_v2.R` at `0_data/v2_results/v2_results.csv` only; drop the network paths (C5). | The gate runs with the network drives unmounted. | Done | | 1.3 | Join on `taxon × region × stage × species × term`. Score plant **climate** against the `region = "all"` rows. | The climate-stage parity table exists for all four plant taxa. | Done; plant habitat terms also relabelled as v2's `04a` does | | 1.4 | Mammals: run both seasons, average them, and compare against `.all`. Gate on `boot == 1` (M4). | Mammal rows are like-for-like. | Done, with season filtering fixed in `list_species()`; mammal habitat joins only terms named alike (new item) | -| 1.5 | Birds: port the `08.PackageCoefficients.R` term translation (C4). | Bird habitat terms join on the standardized template. | Done; exact against `Birds2024.RData`. Needs `_setup/06`. Found and fixed a `method` reference-level bug | +| 1.5 | Birds: port the `08.PackageCoefficients.R` term translation (C4). | Bird habitat terms join on the standardized template. | Done; exact against `Birds2024.RData`. Needs `_setup/04`. Found and fixed a `method` reference-level bug | | 1.6 | Build the non-reachable-term list from v2's code, including `CC*2` (M5). | `reachable_terms` excludes every spline- or convergence-overwritten term. | Done, for plants, mammals and bird placeholders | ### Phase 2: Match v2 behaviour where the harness departs from it @@ -290,7 +294,7 @@ step has an acceptance check. | --- | --- | --- | --- | | 2.1 | Fit the climate stage on the full province draw; apply the region filter only for habitat (C1). | The plant climate coefficients for north and south runs are identical per draw. | Done; north and south climate identical per draw (difference 0) | | 2.2 | Draw the bootstrap once per species over the province, with v2's redraw rule (C2, M6). | Draw sizes match `bootstrap_data()`; a rare species logs and skips instead of aborting. | Done; draws are the full province size, and a species whose draws cannot be made is logged `resample_failed` | -| 2.3 | **Strongly recommended:** harmonize v2's own stored plant bootstrap ids (`-bootstrap-ids.Rdata`: 100 draws for lichen, mite and vascular plant, regenerated for bryophyte) into `lookup/`, and extend `resample_precomputed()` to per-species ids. This turns parity from **distributional** into **numerical, draw by draw**, as birds already allow. | Per-draw climate coefficients match v2 to numerical tolerance (e.g. relative difference < 1e-6), or each deviation is explained. | Done (`_setup/07`, `bootstrap = "v2_ids"`). Exact to 4e-11 per draw against the regenerated bryophyte reference; the published lichen models were not fitted on the stored draws, so only draw 1 matches there | +| 2.3 | **Strongly recommended:** harmonize v2's own stored plant bootstrap ids (`-bootstrap-ids.Rdata`: 100 draws for lichen, mite and vascular plant, regenerated for bryophyte) into `lookup/`, and extend `resample_precomputed()` to per-species ids. This turns parity from **distributional** into **numerical, draw by draw**, as birds already allow. | Per-draw climate coefficients match v2 to numerical tolerance (e.g. relative difference < 1e-6), or each deviation is explained. | Done (`_setup/05`, `bootstrap = "v2_ids"`). Exact to 4e-11 per draw against the regenerated bryophyte reference; the published lichen models were not fitted on the stored draws, so only draw 1 matches there | | 2.4 | Birds: use the 25-model climate set, `vegw`/`soilw` weights, climate carried on the response scale, and v2's advance rule (C4). | The bird climate stage matches `Birds2024.RData` per draw with precomputed ids. | Done; matches v2's own code to 4e-13 (climate and landcover). Also fixed: landcover lacked `Climate`. The published `Birds2024` differs because it came from a different data vintage | | 2.5 | Take the AICc degrees of freedom from `logLik` (M7). Fit once per candidate (M8). | Akaike weights match `MuMIn::model.avg` on a test case. | Done; matches `MuMIn::model.avg` (≤ 6e-17), including aliased terms | | 2.6 | Seed per species, with RNG state restored (M1, M2). | Two runs of the same configuration give identical stores. | Done (earlier); two runs give identical stores | diff --git a/docs/taxon_quirks.md b/docs/taxon_quirks.md index fec697f..a726267 100644 --- a/docs/taxon_quirks.md +++ b/docs/taxon_quirks.md @@ -91,7 +91,7 @@ prediction for plants, and a calibrated probability for mammals. | Factor levels | `vegc` 22, `soilc` 17, `method` 4, `block` 60. Stored order matters, since a level absent from one bootstrap sample must not renumber the rest | OK. Until 2026-09-29 `method` was loaded as `method_veg` and `method_soil` and missed the lookup, so it fell back to alphabetical order with `1SPM` as reference instead of `PC`; `apply_factor_levels()` now follows the suffixes | | Column suffixes | Six columns arrive suffixed `_veg` or `_soil` and are rewritten by `term_map()` | OK | | No coordinates | 0 of 215,758 rows in `sites.csv` carry latitude or longitude | GAP blocks spatial resampling and every spatial term | -| Reference output | The packaged `Birds2024.RData` is absent from the drive's `Results/`; only the per-draw CSVs and an archived copy survive. The parity reference is ABMIexploreR's packaged bird coefficients (`_setup/08`), which match it to ~1e-15 | OK compared. `modules/birds/standardize.R` ports the translation onto the standardized template and reproduces the packaged values exactly. Note the package labels draws 2 to 100 in file-listing order (`b2` is draw 10) | +| Reference output | The packaged `Birds2024.RData` is absent from the drive's `Results/`; only the per-draw CSVs and an archived copy survive. The parity reference is ABMIexploreR's packaged bird coefficients (`_setup/06`), which match it to ~1e-15 | OK compared. `modules/birds/standardize.R` ports the translation onto the standardized template and reproduces the packaged values exactly. Note the package labels draws 2 to 100 in file-listing order (`b2` is draw 10) | **The published bird results come from a different data vintage.** Run on the current `Stratified.Rdata`, v2's own climate code gives @@ -219,7 +219,7 @@ recomputed on load instead. **The published plant models were not fitted on the stored draws.** Replaying v2's stored bootstrap ids (`bootstrap = "v2_ids"`, from -`_setup/07`) reproduces v2 exactly when the reference was fitted on +`_setup/05`) reproduces v2 exactly when the reference was fitted on them: the regenerated bryophyte reference matches to 4e-11 on every draw tested. Against the published lichen models only draw 1, the full data, matches (5e-12); for draws 2 to 6 no row among the 100 @@ -238,7 +238,7 @@ cannot be salvaged, only regenerated. `1_code/_setup/03_rerun_bryophyte_v2_reference.R` does that for the climate stage, and has been run: 134 of 134 species, 100 draws each, no failures. Separately, ABMIexploreR publishes complete bryophyte -arrays (matching v2's `COEFS.RData` to ~1e-15), and `_setup/08` builds +arrays (matching v2's `COEFS.RData` to ~1e-15), and `_setup/06` builds the bryophyte rows of `v2_results.csv` from them, so the gate compares bryophytes. From bf03c80b6b4922e68d5c39780de3ecefffbf30e9 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 04:45:09 -0600 Subject: [PATCH 10/19] Remove outdated code audit documentation --- code_audit_2026-10-06.md | 245 --------------------------------------- 1 file changed, 245 deletions(-) delete mode 100644 code_audit_2026-10-06.md diff --git a/code_audit_2026-10-06.md b/code_audit_2026-10-06.md deleted file mode 100644 index 0bc4cf5..0000000 --- a/code_audit_2026-10-06.md +++ /dev/null @@ -1,245 +0,0 @@ -# Code audit: sdmMethodsDev, 2026-10-06 - -Phase 1: read-only static scan of branch `improve_code_efficiency`. -Nothing was executed: only `parse()`, token and `codetools` analysis, -and path checks. All 83 R files outside `0_data/v2_scripts/` and all -50 legacy v2 scripts were covered. ⚠ marks a file in exp_000 (the -parity gate); those are not edited without separate approval. - - -## Summary - -- All 83 R files outside `v2_scripts/` parse cleanly. -- Every `source()` target and every `.R` path string resolves. -- `codetools` finds no function that is called but never defined, - and no package that is used but never loaded. The remaining - "global variable" notes are data.table column names or - package-level environments (`.sdm_cache`, `.sdm_registry`). -- No pipes of either kind (`|>` or `%>%`) are used anywhere. This - matches the repo's base-R/data.table, no-pipe convention, so - nothing is flagged. -- Sequenced naming: `_setup/` runs 00–03 and 06–10. The 04/05 gap is - deliberate history, since 08 says it replaced the old 04/05. - (Renumbered 00–08 on 2026-10-08; references below use the new - numbers.) There are no prefix collisions and no `MM_NN_` staging in use. -- Errors: **0 high, 1 medium, 7 low**, plus 4 informational items - that need no change. -- Deprecated candidates: **1** (`1_code/_scratch.R`, low - confidence). It is not eligible for deletion under the rules. - -## Errors table - -| # | file | line | issue | severity | proposed fix | -|---|------|------|-------|----------|--------------| -| E1 | `1_code/_setup/run.R` | 49–59 | Step defaults contradict the header (lines 21–29: "defaults rebuild everything local and publish nothing"; 00, 03 and 08 off). In the code every step is `FALSE` except `08_publish_datasets.R = TRUE`, so sourcing `run.R` publishes whatever is in `0_data/` as today's version, with no rebuild and no 02 tally. 08 refuses to overwrite an existing version, which limits the damage. | medium | Set the defaults to match the header: 01, 04, 07, 02, 05 and 06 `TRUE`; 00, 03 and 08 `FALSE`. (Alternative: only set 08 to `FALSE`. See J1.) | -| E2 | `1_code/experiments/exp_000_parity_v2/02_plot_parity.R` ⚠ exp_000 | 399 | A runtime `message()` tells the user to "rerun `02_compare_to_v2.R`", but the script is `01_compare_to_v2.R`. | low | Change the string to `01_compare_to_v2.R`. Message text only; no change to outputs. | -| E3 | `1_code/experiments/exp_000_parity_v2/v2_self_agreement.R` ⚠ exp_000 | 29 | Header comment says "Scored exactly as `02_compare_to_v2.R`"; the file is `01_`. | low | Fix the comment. | -| E4 | `1_code/_setup/01_harmonize_model_ready_v2.R` | 2384 | Comment cites `check_prediction_terms()`, which no longer exists anywhere in the repo. | low | Reword to "found later, at prediction time" without naming a function (the successor is not certain). | -| E5 | `1_code/harness/result.R` | 1–10 | The header has no `inputs:` field (template §5.1). | low | Add `# inputs: none; writes to the store directory it is given`. | -| E6 | `1_code/_setup/05_harmonize_v2_plant_bootstrap_ids.R:147`, `harness/spec.R:590`, `modules/birds/standardize.R:234`, `experiments/exp_000_parity_v2/utils/parity_targets.R:167` ⚠ exp_000 | — | Single lines over the 70-character limit. | low | Re-wrap each line. Line breaks only; no change to the code's logic. | -| E7 | `1_code/tests/testthat/test-*.R` (5 files) | 1 | No standard header and no `# End of script ----`. | low | See J5. Testthat files commonly omit headers, so this needs a decision. | -| E8 | `1_code/_scratch.R` | 30–33 | Code sits *after* `# End of script ----`. It holds a hard-coded UNC path to the old `science\sc\sdmMethodsDev\...` share and a line over 70 characters. | low | See J6 and the deprecated table. | -| I1 | `0_data/v2_scripts/mammals/north-models/archive/04 Basic Models Figures Maps.R` | 1465 | Parse error: unexpected `}`. | info | **No change** (`v2_scripts/` is off-limits). Recorded for taxon leads. | -| I2 | `1_code/harness/model_sets.R` | 154–200 (57 lines) | Lines over 70 characters. These are v2 habitat formula strings, spliced verbatim. | info | No change. Splitting them hurts the line-by-line match with v2. | -| I3 | `1_code/harness/model_sets.R` | 156 | `TreedFen + + NonTreedFen`. The doubled `+` is copied from v2 (`02a/b/c/d_hierarchical-models-*.R:102`) and is a harmless unary plus. | info | No change, to keep fidelity with v2. | -| I4 | `%||%` defined in `harness/spec.R:683`, `harness/new_experiment.R:345` (guarded), `_setup/05…:82`, `tests/compare_stores.R:166` | — | Duplicate definitions. All four are identical, and base R ≥ 4.4 also provides `%||%`. The other duplicated names (`combine`, `failed`, `table_of`, `take_block`, `rows`) are local to their functions, so they never collide. | info | No change. | - -## Deprecated candidates - -| file | reason | evidence it is unused | confidence | -|------|--------|-----------------------|------------| -| `1_code/_scratch.R` | `scratch` naming. Its only code is a stray 2026-09-09 `load()` of an old-share file, placed after the end marker. | No `source()` or path reference in any code. **However**, `README.md:593` documents it as the "dated workspace for exploration", and it follows the personal scratch-file convention. | **low**: documented and intentional, so do not delete. A better option is to clear the stray snippet (J6). | - -Nothing else qualifies: -- Every other file is loaded by `load_framework()` (harness/, - methods/ kind folders, modules/, experiments/_shared/), is an - entry point (`run.R`, `run_tests.R`, `compare_stores.R`, - `v2_self_agreement.R`, `new_experiment.R`), or is called from one. -- `methods/_templates/` and `experiments/_template/` are scaffolding - referenced from READMEs and `new_experiment()`. -- Every file in `3_output/` has a generating script. - -## Items needing human judgement - -- **J1. `_setup/run.R` defaults (E1).** Should the defaults restore - the header's stated behaviour (rebuild everything local), or just - turn 08 off? The current state looks like a leftover from the - 2026-10-05 publish. -- **J2. Committed exp_000 summaries are from a 5-draw plumbing run.** - `3_output/exp_000_parity_v2/run_record.md` records - `n_bootstraps: 5` and 14 parity_check species, and every verdict - reads "not gated (store holds 5 draws)". But `run.R:125–126` says - to commit these only after a full run (all species, 100 draws). Is - this a known interim state? exp_001 and exp_002 compare against - this baseline. -- **J3. `v2_self_agreement_summary.csv` is missing.** - `parity_targets.R` lists it as an input, and `.gitignore` - whitelists it, but it is not in `3_output/exp_000_parity_v2/tables/`. - - *What the script does.* v2 seeds none of its bootstraps, so two - v2 runs of the same code on the same data give different - coefficients. `v2_self_agreement.R` measures how far apart two - such runs are. The first is v2's original bryophyte climate - stage, as published in ABMIexploreR (from `_setup/06`). The - second is `_setup/03`'s re-run of the frozen v2 functions, in - `2_pipeline/v2_reference/`. It scores them against each other - with the gate's own statistics, in both directions: - - median-in-band (each run's median inside the other's - 10–90% band); - - standardized median difference; - - per-species band-width ratio; - - Spearman of the medians (reported, not gated). - It writes `v2_self_agreement.csv` (per term) and a one-row - summary. - - *Why it exists.* It sets the ceiling for the gate: a - reimplementation cannot be expected to agree with v2 more - closely than v2 agrees with itself. The results (100% in band, - standardized difference 0.019, band ratio 0.78–1.21) are the - stated evidence for the thresholds hard-coded in - `parity_targets()`: 90%, 0.25, and 0.75–1.33. - - *Is it necessary?* No experiment or test needs it at run time. - It is not in `run.R`'s sequence, and nothing reads its CSV. It - is the provenance for the gate's thresholds, which - `parity_targets()` still labels "proposed, not yet agreed". - Whoever agrees them, or later questions a pass/fail, needs that - evidence. Keep the script. - - *Limits.* It covers only the bryophyte climate stage; applying - the same thresholds to the habitat and bird stages is an - assumption. Re-running it needs `_setup/03` (hours) and the - gitignored `2_pipeline/v2_reference/`. `_setup/05`'s `v2_ids` - option also depends on 03. - - *Where it runs.* By hand, from the repo root: - `source("1_code/experiments/exp_000_parity_v2/v2_self_agreement.R")`. - Its header says "Run once … after _setup/03 and 06. Not part of - run.R's sequence". It is not one of `run.R`'s `script_step()`s - (compare, plot, report). - - *Should it join the exp_000 pipeline?* No. Its folder is right - (it calibrates exp_000's gate), but it should not be a - `run.R` step: - 1. It reads no harness result. Its output changes only when - the v2 reference changes (`_setup/03` or `06`), not when - exp_000 runs, so every run would recompute an identical - table. - 2. Its key input, `2_pipeline/v2_reference/…Rdata`, is local - and gitignored, and exists only on the machine that ran 03. - Everything else in exp_000 reads the published datasets, so - anyone can run it. As a step, this script would stop - exp_000 for every other user. - 3. Moving it to `_setup/` breaks the rule that `_setup` is - fixed and that experiments own their scripts. - A cleaner long-term option, if wanted, is outside this audit. - `_setup/08` could publish 03's re-run inside `v2_results/`, and - the script could read it via `v2_results_dir()`. It could then - become an optional step that anyone can run. - - *Recommendation.* No code change. Either run it once and commit - the summary CSV, which `.gitignore` already allows (this needs - your go-ahead, because it reads data and writes outputs), or - accept that the numbers recorded in `parity_targets.R:38–47` - are the record and drop the CSV from that header's `inputs:`. - - *Confidence: High* on what it does. *Moderate* on "necessary": - that depends on whether the team treats the thresholds as - settled. -- **J4. Absolute local path in a committed file.** - `run_record.md` records `pipeline_dir: - D:/local_projects/active/...`. It sits in the "volatile" section, - so it is harmless, but the path is machine-specific. -- **J5. Test-file conventions (E7 and naming).** `test-*.R` uses a - hyphen, which is the testthat convention. `test_*.R` also works, - but renaming has little value. Should the 5 test files get - standard headers? -- **J6. `_scratch.R` (E8).** Empty the 2026-09-09 snippet (keeping - the header), leave it as is, or delete the file (it is documented - in the README)? -- **J7. Out-of-scope leftovers I will not touch.** - - `2_pipeline/exp_001_gbm/` is an orphan store from a renamed - experiment. - - `0_data/test_dataset_backup_2026-10-02_aug2026_birds/` is a - backup dataset folder. - - `3_output/exp_001_xgboost/` and `exp_002_soilgrids/` are empty - folders. - - None of these is tracked by git; you may want to clear them by - hand. -- **J8. "the project file sets it"** (`exp_000/run.R:34`). No - `.Rproj` is tracked in the repo. This is a documentation and setup - question for the separate docs prompt. - -## Appendix A: repository map - -The table lists each file with its purpose, from its header title, -and its main reads and writes. Key reads: TD is the published test -dataset via `data_source.R`; V2R is the published v2 results; SI is -the `setup_inputs` mirror via `_setup/utils/input_paths.R`. - -| file | purpose | reads → writes | -|------|---------|----------------| -| `_setup/run.R` | Entry point: runs the _setup steps in isolated environments | _setup scripts → `2_pipeline/_setup/run_log.csv` | -| `_setup/00_mirror_setup_inputs.R` | Mirror the original inputs (old shares, G: drives) onto ABMI-DATA2 | originals → SI | -| `_setup/01_harmonize_model_ready_v2.R` | v2 snapshot → harmonized CSVs | SI → `0_data/test_dataset/` | -| `_setup/02_validate_test_dataset.R` | Pass/fail tally of the dataset | `0_data/test_dataset/`, SI → console | -| `_setup/03_rerun_bryophyte_v2_reference.R` | Re-run the v2 bryophyte models (sources `v2_scripts/plants/*functions.R`) | SI → `2_pipeline/v2_reference/` | -| `_setup/04_…bird_translation_lookup.R` | Bird coefficient translation lookup | SI → `test_dataset/lookup/` | -| `_setup/05_…plant_bootstrap_ids.R` | v2's stored plant bootstrap ids | SI, v2_reference → `lookup/v2_bootstrap_ids/` | -| `_setup/06_…abmiexplorer_results.R` | ABMIexploreR coefficients at a pinned commit | GitHub → `0_data/v2_results/abmiexplorer/` | -| `_setup/07_harmonize_lookups.R` | Cross-taxa lookups | 01/04 outputs → `lookup/` | -| `_setup/08_publish_datasets.R` | Publish a versioned copy with checksums | `0_data/` → ABMI-DATA2 | -| `_setup/utils/input_paths.R` | `setup_input()` resolver | — | -| `harness/harness.R` | `load_framework()`: sources harness, then methods, then modules, then experiments/_shared | all of those | -| `harness/{registry,cache,data_source,spec,data_load,covariate_sets,species,model_sets,resample,engines,selection,eval_metrics,predict_grid,result,run_record,run_model,summarise,compare,experiment,new_experiment}.R` | Taxon-agnostic pipeline (loaded in this order) | TD/V2R → `2_pipeline//`, `3_output//` | -| `methods/engines/{_glm_family,glm,bayesglm,xgboost}.R` | Engine plug-ins | — | -| `methods/selection/{aic_average,aic_best,hurdle,ivw_grid,single,staged_bic}.R` | Selection plug-ins | — | -| `methods/resampling/{precomputed,spatial_block,spatial_cv}.R` | Resampling plug-ins (precomputed reads `lookup/v2_bootstrap_ids/`) | TD | -| `methods/metrics/{auc,calibration_slope,deviance_explained,n,prevalence,rmse,spearman}.R` | Metric plug-ins | — | -| `methods/_templates/*.R` | Skeletons; not loaded | — | -| `modules/_shared/{plant_group,standard_specs}.R` | Plant-group spec builder; the v2 spec list | — | -| `modules//spec.R` (+ `birds/standardize.R`, `mammals/hurdle.R`) | Per-taxon v2 specs and helpers | TD lookups | -| `experiments/_shared/focal_species.R` | Named focal-species sets | — | -| `experiments/_template/run.R` | Scaffold copied by `new_experiment()` | — | -| `experiments/exp_000_parity_v2/run.R` | Entry: parity gate; runs 01–03 as `script_step`s | TD, V2R → `2_pipeline/exp_000…`, `3_output/exp_000…` | -| `exp_000/01_compare_to_v2.R` | Coefficient parity vs v2 | stores, V2R → `parity_summary.csv`, `parity_terms.csv`, `coefficient_summary.csv` | -| `exp_000/02_plot_parity.R` | Parity figures | tables → `figures/*.png` | -| `exp_000/03_build_report.R` | `report.md` | tables → `report.md` | -| `exp_000/utils/parity_targets.R` | Gate thresholds | — | -| `exp_000/v2_self_agreement.R` | Stand-alone: v2 vs v2 calibration | `2_pipeline/v2_reference/`, V2R → `v2_self_agreement*.csv` | -| `experiments/exp_001_xgboost/run.R` | Entry: xgboost habitat stage | TD → `2_pipeline/exp_001_xgboost/`, `3_output/…` | -| `experiments/exp_002_soilgrids/run.R` | Entry: soil terms in the climate stage; sources 01 if the input is missing | soil CSV, TD → stores and outputs | -| `exp_002/01_extract_soilgrids_covariates.R` | sciSpatialR/sf extraction | TD sites, SoilGrids → `2_pipeline/exp_002…/inputs/soilgrids_0_5cm.csv` | -| `tests/run_tests.R` | Entry: testthat over `tests/testthat/` | TD (skipped if unreachable) | -| `tests/testthat/test-{dataset,methods,new_experiment,results,specs}.R` | Contract tests | TD | -| `tests/compare_stores.R` | Stand-alone/CLI: compare two store trees | `2_pipeline` stores | -| `_scratch.R` | Personal scratch | old-share `.Rdata` | - -## Appendix B: dependency map - -- **Entry points**: - - `_setup/run.R` - - each `experiments/*/run.R` - - `tests/run_tests.R` - - `tests/compare_stores.R` (CLI) - - `exp_000/v2_self_agreement.R` - - `harness/new_experiment.R` (also stand-alone) - - `_scratch.R` -- **Sourced by `load_framework()`**: all of `harness/`, the - `methods/{engines,selection,resampling,metrics}/` folders (files - starting with `_` first), `modules/*/` (`_shared` first), and - `experiments/_shared/`. -- **Also re-sourced**: parallel workers source it again via - `run_model.R:555` (`load_worker`). exp_000's 01–03 run through - `experiment.R:556` (`sys.source`). -- **Other `source()` edges**: - - `_setup/{01,02,03,04,05,06}` → `_setup/utils/input_paths.R` - - `00` → `input_paths.R` (via `helper`) - - `08` → `harness/data_source.R` (via `resolver`) - - `03` → `0_data/v2_scripts/plants/{hierarchical-model_functions,bootstrapping_functions}.R` - - `v2_self_agreement.R` → `parity_targets.R` and `data_source.R` - - `exp_002/run.R` → `exp_002/01_…R` - - `exp_002/01` → `data_source.R` -- **Packages**: - - Attached with `library()`: data.table, ggplot2 (exp_000/02), - testthat, foreach and parallel (03), sciSpatialR and sf - (exp_002/01). - - Attached on cluster workers in 03 only: AICcmodavg, arm, binom, - mapproj, mgcv, MuMIn, pROC, RcmdrMisc. - - Called with `::` and guarded by `requireNamespace()`: arm, - xgboost, MuMIn, mgcv, pROC, jsonlite, terra, withr, stats, - utils, tools, parallel. - - All the `::` packages are installed on this machine. - From 00a927254748f109cc25a08af277fdfd5225deb6 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 04:45:17 -0600 Subject: [PATCH 11/19] Refactor README and related documentation for clarity and structure - Updated the README.md to improve clarity on the purpose and structure of the repository. - Enhanced sections on the status of components, how the repository works, and the experiment pipeline. - Added detailed instructions on building the dataset and running experiments. - Improved the organization of the documentation, including clearer headings and subheadings. - Added new sections on the test dataset, environment variables, and the module interface. - Revised the status table to reflect the current state of the test dataset and pipeline. - Updated the "Adding an experiment" and "Contributing a taxon module" sections for better guidance. - Cleaned up redundant information and ensured consistency in terminology throughout the documentation. --- README.md | 759 +++++++++++++++++++++++++++++++++++++++++++++++------- 1 file changed, 668 insertions(+), 91 deletions(-) diff --git a/README.md b/README.md index 18cc846..7031e0e 100644 --- a/README.md +++ b/README.md @@ -14,21 +14,18 @@ Institute (ABMI). It is intended for internal use. The ABMI Science Centre's shared R&D repository for Species Models 3.0. It holds a frozen cross-taxa test dataset, one modelling pipeline that -runs every taxon's v2.0 model as configuration, and a v2 parity check -(`exp_000`) that every later experiment is compared against. A methods -question is asked once and answered for every taxon. It is for -Science Centre modellers testing methods; it does not produce the -final species models or reporting products. +runs every taxon's v2.0 model as a configuration, and a v2 parity check +(`exp_000`) that later experiments are compared against. -## Status -| Component | State | -| --- | --- | -| Test dataset | Built for bryophytes, lichens, soil mites, vascular plants, mammals and birds. Validated by `_setup/02`. Published to ABMI-DATA2, version 2026-10-05 | -| v2 reference | ABMIexploreR's published coefficients, harmonized by `_setup/06` | -| Pipeline | Built: plug-in methods, parallel species, final-model metrics and habitat grids for every taxon, experiment runner, contract tests | -| Taxon specs | Every stage of every taxon runs. Each spec's `v2_coverage` states what it reproduces; `report.md` prints it | -| exp_000 (v2 parity) | A 100-draw run on the `parity_check` species passed all 22 taxon × region × stage rows on 2026-10-03 (see the [exp_000 README](1_code/experiments/exp_000_parity_v2/README.md)). The committed tables are from a later 5-draw trial. Not yet a gate: see [Parity gate](#parity-gate) | + +**Why this exists** +Species Models are produced one taxon at a time, each by its taxon lead. That +works for production, but it confines R&D to one taxon: a method that improves +plant models may or may not improve bird models, and testing it three times in +three codebases duplicates effort. + +This R&D repository is designed to streamline model R&D accross all taxa. It is for testing new methods; it does not produce the final species models or reporting products. ## Repository structure @@ -39,7 +36,7 @@ sdmMethodsDev/ │ ├── v2_results/ # the v2 parity reference, from _setup/06 │ ├── external/ # downloaded sources (ABMIexploreR), from _setup/06 │ ├── covariates/ # reserved; empty -│ └── v2_scripts/ # v2 scripts as received; reference only +│ └── v2_scripts/ # v2 scripts as received by toxon leads; reference only ├── 1_code/ │ ├── harness/ # the shared pipeline; names no taxon or method │ ├── methods/ # engines, selection rules, resampling, metrics @@ -50,20 +47,659 @@ sdmMethodsDev/ │ └── _scratch.R # dated workspace for exploration ├── 2_pipeline/ # result stores and intermediates; gitignored ├── 3_output// # per-experiment outputs; summaries committed -└── docs/ # getting started, design, taxon quirks, reviews +└── docs/ # getting started, design, taxon quirks, vignettes +``` + +## How it works + +‎1_code/_setup/README.md‎ ++89Lines changed: 89 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -0,0 +1,89 @@ +# _setup +Builds the frozen test dataset and the v2 reference in `0_data/`, then +publishes them to ABMI-DATA2. Run by hand, by maintainers, once per +source snapshot. No experiment runs these scripts: experiments read the +published copies (see `harness/data_source.R`). +The scripts read their external inputs from a mirror on +`//ABMI-DATA2/science/sdmMethodsDev/0_data/setup_inputs/`, through +`utils/input_paths.R`, so anyone with access to that share can +rebuild. +## Run +From the repository root: +```r +source("1_code/_setup/run.R") ``` +`run.R` runs the steps in dependency order, with on/off switches in +section 1.2, and logs timings to `2_pipeline/_setup/run_log.csv`. `00`, +`03` and `10` are off by default. Run order: `01`, `06`, `09`, `02`, +`03`, `07`, `08`, then `10`. There is no `04` or `05`; they were +retired once `08` replaced them. +## Scripts +| Script | Reads | Writes | +| --- | --- | --- | +| `00_mirror_setup_inputs.R` | Every external input, at its original location | `setup_inputs/` on ABMI-DATA2, with `inputs_manifest.csv`. Run once; never overwrites | +| `01_harmonize_model_ready_v2.R` | The `model_ready_v2` snapshot, mammal camera climate, WildTrax species lookup, v2 prediction matrices, bird `Stratified.Rdata` | `0_data/test_dataset/`: responses, `sites.csv`, `covariates.csv`, `bird_offsets.csv`, and most of `lookup/` | +| `02_validate_test_dataset.R` | The test dataset and the same sources | Nothing; prints a pass / fail tally. Run after `01`, `06` and `09` | +| `03_rerun_bryophyte_v2_reference.R` | v2 plant project bryophyte data, frozen v2 functions in `0_data/v2_scripts/plants/` | `2_pipeline/v2_reference/`: `bryophyte-species-models.Rdata`, `bryophyte-bootstrap-ids.Rdata`. Takes hours | +| `06_harmonize_bird_translation_lookup.R` | v2's bird `Xn-veg-v2024.Rdata` | `lookup/bird_veg_age_matrix.csv`. Re-run whenever `01` rebuilds `lookup/` | +| `07_harmonize_v2_plant_bootstrap_ids.R` | v2's stored plant draws; `03`'s bryophyte draws | `lookup/v2_bootstrap_ids//.rds`, for `plant_bootstrap = "v2_ids"` | +| `08_harmonize_abmiexplorer_results.R` | ABMIexploreR's `species-coefs.RData` at a pinned commit; bird `birdlist.csv` | `0_data/external/abmiexplorer//`; `0_data/v2_results/abmiexplorer/v2_results.csv` and `v2_results_coverage.csv` | +| `09_harmonize_lookups.R` | `0_data/test_dataset/lookup/` only; offline, seconds | `species_queue.csv`, `factor_levels.csv`, `dataset_manifest.csv`, bird prediction grids | +| `10_publish_datasets.R` | `0_data/test_dataset/`, `0_data/v2_results/` | A new `/` of each on ABMI-DATA2, with `checksums.csv` and `publish_record.md` | +| `run.R` | The scripts above | Runs them in order | +| `utils/input_paths.R` | | `setup_input()`: paths inside the input mirror | +After `10`, move the pin in `1_code/harness/data_source.R`. A +published version is never overwritten. +## The test dataset +`0_data/test_dataset/` holds the data the v2 models were fitted on. It +does not change between experiments. +| File | Holds | +| --- | --- | +| `sites.csv` | One row per survey unit: identity, design, location, and an `in_` flag per taxon | +| `.csv` | `survey_unit_id` plus one column per species: detections (plants), densities (mammals), counts (birds) | +| `bird_offsets.csv` | QPAD log offsets per survey unit and bird species | +| `covariates.csv` | Every covariate for every taxon, keyed on `survey_unit_id` and a taxon covariate key | +| `lookup/dataset_manifest.csv` | Per taxon and region: files, covariate key, grid and stored draws. The harness reads file locations only from here | +| `lookup/species_queue.csv` | Every taxon's species queue in one schema | +| `lookup/covariate_columns.csv` | Each covariate's block and v2 spelling, per taxon | +| `lookup/factor_levels.csv` | Source order of categorical levels, so contrasts match v2 | +| `lookup/*_prediction_matrix.csv` | Habitat grids: one row per habitat type, a pure stand | +| `lookup/bird_bootstrap_ids.csv`, `lookup/v2_bootstrap_ids/` | v2's stored draws: birds, and plants per species | +| `lookup/mammal_climate_predictions.csv` | v2's precomputed mammal climate prediction | +| `lookup/bird_veg_age_matrix.csv` | v2's bird landcover translation matrix | +Columns in more than one block are suffixed (`HardLin_veg`, +`HardLin_soil`). Ten derived columns (`TD`, `MAT2`, `Easting2` and +others) are computed on load, not stored. Taxon-specific details are in +[`docs/taxon_quirks.md`](../../docs/taxon_quirks.md). +## Environment variables +Each overrides a default path. +| Variable | Read by | Points at | +| --- | --- | --- | +| `SDM_SETUP_INPUT_ROOT` | `00`–`08` | The input mirror | +| `SDM_SNAPSHOT_V2` | `01`, `02` | The `model_ready_v2` snapshot folder | +| `SDM_MAMMAL_CAMERA_CLIMATE` | `01` | `abmi-camera-climate_2023.Rdata` | +| `SDM_MAMMAL_CLIMATE_PRED` | `01`, `02` | `All Species Climate Predictions.csv` | +| `SDM_V2_LOOKUP` | `01` | The v2 folder holding the plant prediction matrices | +| `SDM_WT_SPECIES` | `01` | `WildTrax Species Strings.RData` | +| `SDM_BIRD_DATA` | `01`, `02` | The bird `Stratified.Rdata` v2 was fitted on | +| `SDM_V2_PROJECT` | `03`, `07` | The v2 plant project (`VegetationModels`) | +| `SDM_V2_BIRD_ROOT` | `06` | The v2 bird project (`BirdModels`) | +| `SDM_V2_BOOT_TAXA`, `SDM_V2_BOOT_SPECIES` | `07` | Comma-separated subsets to copy | +| `SDM_ABMIEXPLORER_SHA` | `08` | The ABMIexploreR commit to download | +| `SDM_V2_BIRD_LOOKUP` | `08` | The v2 bird `birdlist.csv` | +| `SDM_SHARE_ROOT`, `SDM_DATASET_VERSION`, `SDM_PUBLISH` | `10` | Publish root, version folder (default today, `YYYY-MM-DD`), datasets | +‎1_code/experiments/README.md‎ ++46Lines changed: 46 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -0,0 +1,46 @@ +# experiments +One folder per methods question, keyed `exp_NNN_short_description`. +Each folder has a `run.R` entry point that calls `experiment_config()` +and `run_experiment()` (see the [harness README](../harness/README.md)), +and a `README.md` stating the question. The same id names the +experiment's folders in `2_pipeline/` and `3_output/`. +| Folder | Holds | Status | +| --- | --- | --- | +| `_shared/` | `focal_species.R`: `focal_species_sets()`, the named species sets (`full`, `parity_check`, `plants_only`, `one_each`) | | +| `_template/` | The `run.R` and `README.md` that `new_experiment()` fills in | | +| [`exp_000_parity_v2/`](exp_000_parity_v2/README.md) | The v2 parity check and the baseline for every other experiment | Not yet a gate | +| [`exp_001_xgboost/`](exp_001_xgboost/README.md) | Habitat stage fitted with xgboost, every taxon | Test; 5-draw check only | +| [`exp_002_soilgrids/`](exp_002_soilgrids/README.md) | SoilGrids 0–5 cm terms in the climate stage, plants and birds | Test; 5-draw check only | +exp_000 is the required gate before iterative R&D: every other +experiment is compared against its tables. +## Adding an experiment +1. Scaffold it from the repository root: + ```r + source("1_code/harness/new_experiment.R") + new_experiment("covariate scale") # dry_run = TRUE to preview + ``` + This takes the next free number across `1_code/experiments/`, + `2_pipeline/` and `3_output/`, copies `_template/` with the id, + title, author and date filled in, and creates + `2_pipeline//logs/` and `3_output//` with `figures/`, + `tables/` and a stub `report.md`. Leave `id` in `run.R` as it is. +2. State the question and design in its `README.md`. +3. Change one thing relative to exp_000: `stage_models`, + `covariate_files` or `specs`. Keep exp_000's species, draws and seed + unless they are the question. +4. Never add columns to `0_data/` or change `_setup/` for an + experiment. Covariates the dataset lacks are written by a script in + the experiment's folder to `2_pipeline//inputs/` and named in + `covariate_files`; `exp_002_soilgrids` is the example. +5. Run it at 5 draws to check it works, then at 100. Compare it with + an exp_000 run at the same number of draws. +Each lever is walked through in +[`docs/getting_started.md`](../../docs/getting_started.md#test-a-change). +‎1_code/experiments/exp_000_parity_v2/README.md‎ ++108-237Lines changed: 108 additions & 237 deletions + +Large diffs are not rendered by default. +‎1_code/experiments/exp_001_xgboost/README.md‎ ++14-7Lines changed: 14 additions & 7 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -24,7 +24,8 @@ draws with tuned settings. + + + +- **What changes:** the habitat stage's engine, selection rule and + +- **What changes:** the habitat stage's engine, selection rule and + candidate set. `run.R` makes the change with one call for every run: + + candidate set. `run.R` makes the change with one call for every run: + `lapply(standard_specs(), replace_stage_method, engine = "xgboost")`. + + `lapply(standard_specs(), replace_stage_method, engine = "xgboost", + control = xgb_settings)`. +- **Why one formula:** a tree chooses its own variables, splits and + +- **Why one formula:** a tree chooses its own variables, splits and + interactions, so it is given every candidate covariate once (as main + + interactions, so it is given every candidate covariate once (as main + effects) rather than v2's competing formulas. + + effects) rather than v2's competing formulas. +@@ -54,6 +55,11 @@ From the repository root: +source("1_code/experiments/exp_001_xgboost/run.R") + +source("1_code/experiments/exp_001_xgboost/run.R") +``` + +``` + + + +It reads the published test dataset and exp_000's +`3_output/exp_000_parity_v2/tables/`, and writes stores to +`2_pipeline/exp_001_xgboost/` and summaries to +`3_output/exp_001_xgboost/`. +`run.R` uses 5 draws to check the pipeline. For a result, set + +`run.R` uses 5 draws to check the pipeline. For a result, set +`n_bootstraps = 100`, and make sure the exp_000 tables it is compared + +`n_bootstraps = 100`, and make sure the exp_000 tables it is compared +against are from a 100-draw run of the same species. + +against are from a 100-draw run of the same species. +@@ -73,9 +79,10 @@ GLM does, so in-sample metrics would flatter it. +## Assumptions and caveats + +## Assumptions and caveats + + + +- **The xgboost settings are untuned.** At most 1000 rounds, learning + +- **The xgboost settings are untuned.** At most 1000 rounds, learning + rate 0.05, depth 3, subsample 0.5, minimum child weight 1. The number of + + rate 0.05, depth 3, subsample 0.5, minimum child weight 1 (`run.R` + rounds is chosen by early stopping on a seeded 20% holdout of each draw, + + section 1.2). The number of rounds is chosen by early stopping on a + then the model is refitted on all of the draw. A fair comparison tunes + + seeded 20% holdout of each draw, then the model is refitted on all of + the draw. A fair comparison tunes + these, ideally per taxon. + + these, ideally per taxon. +- **The grid compares like with like only roughly.** The grid holds each + +- **The grid compares like with like only roughly.** The grid holds each + habitat type as a pure stand at `Climate` 0. A GLM extrapolates to that + + habitat type as a pure stand at `Climate` 0. A GLM extrapolates to that +@@ -93,9 +100,9 @@ GLM does, so in-sample metrics would flatter it. +- **Bird counts keep the QPAD offset**, which the engine passes as the + +- **Bird counts keep the QPAD offset**, which the engine passes as the + base margin in fitting and prediction. + + base margin in fitting and prediction. +- **gbm was replaced.** The first version of this experiment + +- **gbm was replaced.** The first version of this experiment + (`exp_001_gbm`, 2026-10-03; its output is kept in + + (`exp_001_gbm`, 2026-10-03) used `gbm`, which cannot fit the mammal + `3_output/exp_001_gbm/`) used `gbm`, which cannot fit the mammal hurdle: + + hurdle: its bernoulli rejects a 0–1 proportion and it has no Gamma + its bernoulli rejects a 0–1 proportion and it has no Gamma family. + + family. + + + +## Result + +## Result + + + +‎1_code/experiments/exp_002_soilgrids/README.md‎ ++5Lines changed: 5 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -75,6 +75,11 @@ reads the layer from the `//ABMI-DATA2` share; set `SDM_SOILGRIDS` to a local +copy of the raster to read it from there instead. Delete the file to extract + +copy of the raster to read it from there instead. Delete the file to extract +again. + +again. + + + +It also reads the published test dataset and exp_000's +`3_output/exp_000_parity_v2/tables/`, and writes stores to +`2_pipeline/exp_002_soilgrids/` and summaries to +`3_output/exp_002_soilgrids/`. +`run.R` uses 5 draws to check the pipeline. For a result, set + +`run.R` uses 5 draws to check the pipeline. For a result, set +`n_bootstraps = 100` and compare against a 100-draw exp_000. + +`n_bootstraps = 100` and compare against a 100-draw exp_000. + + + +‎1_code/harness/README.md‎ ++123Lines changed: 123 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -0,0 +1,123 @@ +# harness +The shared pipeline. It names no taxon and no method: taxon modules +supply specs, `methods/` supplies what the specs name, and the harness +runs them. A change here affects every experiment, past and future; +review it as such and check it with [`1_code/tests/`](../tests/). +Load everything with: +```r +source("1_code/harness/harness.R") +load_framework() # harness/, methods/, modules/, experiments/_shared/ +``` +`new_experiment.R` is the exception: it is base R and runs without +`load_framework()`. +## Files +| File | Holds | +| --- | --- | +| `harness.R` | `load_framework()`: sources the harness, methods, modules and `experiments/_shared/`, in that order | +| `experiment.R` | `experiment_config()`, `run_experiment()`, `script_step()` | +| `new_experiment.R` | `new_experiment()`: scaffold an experiment's three folders | +| `data_source.R` | The pinned published dataset versions; `test_dataset_dir()`, `v2_results_dir()`, `verify_published()` | +| `data_load.R` | `lookup/dataset_manifest.csv`, loaders, `covariate_files` joins, model frames | +| `cache.R` | Session cache for dataset reads | +| `covariate_sets.R` | Named covariate sets, derived columns, term renaming | +| `model_sets.R` | v2 candidate formulas, spliced verbatim; `extend_models()`, `models_from_covariates()` | +| `spec.R` | `validate_spec()`, `apply_stage_models()`, `replace_stage_method()` | +| `registry.R` | `register_engine()` and the other `register_*()`; `list_methods()` | +| `engines.R` | Engine interface and `check_engine()` | +| `selection.R` | Plumbing for selection rules: `fit_candidates()`, `combined_predictor()`, `selection_result()` | +| `resample.R` | Per-species seeds, `with_seed()`, spatial blocks | +| `species.R` | Species lists and focal-species resolution | +| `predict_grid.R` | Projects a final model onto a habitat grid | +| `eval_metrics.R` | Scores a prediction with every registered metric | +| `run_model.R` | `run_specs()`: prepare each spec, fit species in parallel, merge shards | +| `result.R` | The result store: writes and reads its files | +| `summarise.R` | `collect_results()`: stores to summary tables | +| `compare.R` | `compare_experiments()`: one experiment against another | +| `run_record.R` | `run_record()`: writes `run_record.md` | +## What `run_experiment()` does +1. **Configure.** `experiment_config()` checks every decision before + anything is fitted. +2. **Fit.** Every spec is validated and each region's data and grid + are loaded once. Each species is one job; with `workers` above 1, + jobs run in parallel R sessions. Each species draws under its own + seed, so results do not depend on the worker count. A failed + species or draw is logged and the run continues. +3. **Store.** Shards are merged into one store per run and region in + `2_pipeline//`, plus `run_log.csv`. +4. **Summarize.** `collect_results()` writes `3_output//tables/`. +5. **Compare.** Every experiment except the baseline writes + `tables/comparison_metrics.csv` against exp_000. +6. **Steps.** The experiment's own `steps`, in order. +7. **Record.** `run_record.md`. +`run_experiment(config, fit = FALSE)` re-summarizes existing stores. +Nothing outside `2_pipeline//` and `3_output//` is written. +## `experiment_config()` arguments +| Argument | Default | Sets | +| --- | --- | --- | +| `id` | | Folder name under `2_pipeline/` and `3_output/` | +| `taxa` | all | Runs, from `names(standard_specs())` | +| `species` | every species | A `focal_species_sets()` name, or a vector named by taxon | +| `n_bootstraps` | `100` | Draws per species; v2 used 100. 5 checks a run works | +| `seed` | `20260909` | Base seed; `NULL` leaves draws unseeded, as v2 did | +| `stage_models` | v2's | Replacement candidate sets, keyed `stage` or `taxon.stage` | +| `covariate_files` | none | CSVs of extra covariates keyed on `survey_unit_id` | +| `specs` | `standard_specs()` | Changed specs, such as a different engine or rule | +| `plant_bootstrap` | `"spatial_block"` | `"v2_ids"` replays v2's stored plant draws | +| `workers` | `1` | Species fitted at once | +| `unit_predictions` | `"none"` | `"oob"` or `"all"` writes per-unit predictions | +| `baseline` | `"exp_000_parity_v2"` | Experiment to compare with; `NULL` skips | +| `v2_bootstraps` | `100` | Draws a run needs to be gated | +| `project_root`, `data_dir`, `pipeline_dir`, `out_dir` | derived | Path overrides | +## Outputs +A *draw* is one bootstrap iteration; draw 1 is the full data. Every +summary reduces draws to `median`, `p10` and `p90` (what comparisons +read), plus `mean`, `sd`, `n` and `boot1` (the draw-1 value). +### Result stores: `2_pipeline////` +| File | Holds | +| --- | --- | +| `coefficients.csv` | Every stage's coefficients per species, draw and term | +| `metrics.csv` | Metrics per species and draw | +| `grid_predictions.csv` | The final model's prediction for each habitat type | +| `unit_predictions.csv` | Only with `unit_predictions = "oob"` or `"all"`; several GB for birds | +| `meta.json` | Stages, engines, rules, covariates, resampling, seed, overrides | +`2_pipeline//run_log.csv` records every species, region and draw: +`ok`, or why not. +### Summary tables: `3_output//tables/` +| File | One row per | Notes | +| --- | --- | --- | +| `coverage.csv` | run × region | Species, draws and stages written; `species = 0` means nothing ran (see `run_log.csv`) | +| `metric_summary.csv` | taxon × region × species × metric | Prefixes: `insample_`, `oob_` (held-out; NA for draw 1), `v2val_` and `oob_v2val_` (v2's seven plant validation AUCs) | +| `grid_summary.csv` | taxon × region × species × `grid_unit` | Response scale; pure stand at the stage's constants (`Climate` 0) | +| `coefficient_summary.csv` | run × region × stage × species × term | Gitignored. Term meaning varies by taxon and stage | +| `comparison_metrics.csv` | species × metric | Against exp_000; both sides' summaries, the difference, and whether this run did better. Gitignored | +Metrics: `auc`, `deviance_explained`, `rmse`, `spearman`, +`calibration_slope`, `prevalence`, `n`. They score each run's final +model, so for plants `insample_auc` equals `v2val_Full`. "Better" is +higher AUC, deviance explained and Spearman, lower RMSE, and a +calibration slope closer to 1. +## Data access +Runs read the published dataset versions pinned in `data_source.R` +(`sdm_published$versions`), on `//ABMI-DATA2/science/sdmMethodsDev/0_data/`. +Set `SDM_TEST_DATASET` or `SDM_V2_RESULTS` to read another copy. Each +call checks file presence and size; `verify_published()` checks md5. +‎1_code/methods/README.md‎ ++8-6Lines changed: 8 additions & 6 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -71,7 +71,8 @@ such as `xgboost`'s `objective = "binary:logistic"`, translates it. +### Testing an engine + +### Testing an engine + + + +```r + +```r +check_engine(engine_mine()) + +check_engine(my_engine()) # a definition, or a registered name +check_engine("glm") +``` + +``` + + + +`check_engine()` fits small synthetic binomial and Poisson data, + +`check_engine()` fits small synthetic binomial and Poisson data, +@@ -81,14 +82,15 @@ the engine meets the dataset. + + + +### Which rules an engine can use + +### Which rules an engine can use + + + +An engine without an information criterion or coefficients - a + +An engine without an information criterion or coefficients (a +boosted regression tree, a random forest - can still run any + +boosted regression tree, a random forest) can still run any +stage, using the `single` rule: one formula, fitted as given. To + +stage, using the `single` rule: one formula, fitted as given. To +compare it with v2 on a stage v2 fits with model averaging, + +compare it with v2 on a stage v2 fits with model averaging, +replace that stage's engine, selection and models together. The + +replace that stage's engine, selection and models together. The +v2 post-processing steps that read coefficients (the plant + +v2 post-processing steps that read coefficients (the plant +stand-age splines, say) then do not apply, and the stage should + +stand-age splines, say) then do not apply, and the stage should +drop them; see `docs/getting_started.md`. + +drop them; see +[`docs/getting_started.md`](../../docs/getting_started.md#2-a-different-engine-or-rule-specs). + + + +`replace_stage_method()` does all of this in one call. Its stage + +`replace_stage_method()` does all of this in one call. Its stage +defaults to the spec's `habitat_stage`, so the same call serves + +defaults to the spec's `habitat_stage`, so the same call serves +@@ -99,8 +101,8 @@ specs <- lapply(standard_specs(), replace_stage_method, + engine = "xgboost") + + engine = "xgboost") +``` + +``` + + + +A **composite** rule - one that declares `part_selection`, as + +A **composite** rule (one that declares `part_selection`, as +`hurdle` does - keeps its place, and the new rule becomes the one + +`hurdle` does) keeps its place, and the new rule becomes the one +each part runs. The mammal hurdle's structure (presence on every + +each part runs. The mammal hurdle's structure (presence on every +unit, abundance where the species was found) is a property of the + +unit, abundance where the species was found) is a property of the +data, so it stays; the new engine fits both halves, and v2's + +data, so it stays; the new engine fits both halves, and v2's +‎1_code/modules/README.md‎ ++78Lines changed: 78 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -0,0 +1,78 @@ +# modules +One v2 spec per taxon. A module holds configuration, not modelling +code: it states what v2 does for a taxon as a spec list, and the +[harness](../harness/) runs it. A change here affects every +experiment; review it as such. +`load_framework()` sources `_shared/` first, then every other folder, +each in file-name order. +## Files +| Folder | File | Defines | +| --- | --- | --- | +| `_shared/` | `plant_group.R` | `plant_group_spec()`, the builder for the four plant-group taxa, and their v2 post-processing (`plant_age_splines()`, `plant_cutblock_convergence()`, `plant_paspen()`, `plant_footprint_pooling()`) | +| `_shared/` | `standard_specs.R` | `standard_specs(plant_bootstrap)`: every run in its v2 configuration | +| `bryophytes/` | `spec.R` | `bryophyte_spec(use_protocol, bootstrap)` | +| `lichens/` | `spec.R` | `lichen_spec(use_protocol, bootstrap)` | +| `soil_mites/` | `spec.R` | `soil_mite_spec(use_protocol, bootstrap)` | +| `vascular_plants/` | `spec.R` | `vascular_plant_spec(use_protocol, bootstrap)` | +| `mammals/` | `spec.R` | `mammal_spec(climate_source, season, tier)` | +| `mammals/` | `hurdle.R` | v2's hurdle tables: presence and abundance effects, splines, calibration, convergence | +| `birds/` | `spec.R` | `bird_spec()` | +| `birds/` | `standardize.R` | `bird_habitat_translation()`: landcover coefficients onto v2's standardized habitat types (port of v2's `08.PackageCoefficients.R`) | +`standard_specs()` returns seven runs: `bryophyte`, `lichen`, `mite`, +`vascular_plant`, `mammal_summer`, `mammal_winter` and `bird`. +## The module interface +A taxon module must: +1. Define a function `_spec(...)` in + `modules//spec.R` that returns a spec list. +2. Return a spec that passes `validate_spec()`. Unknown fields are + errors, and every named engine, rule and resampler must be + registered. +3. Add its run to `standard_specs()` in `_shared/standard_specs.R`. +Spec fields the harness reads (full list: `spec_fields()` in +`harness/spec.R`): +| Field | Sets | +| --- | --- | +| `taxon` | Data slug that keys the response file, covariates and lookups | +| `response_name`, `response_transform`, `family`, `weight_column` | How the recorded value becomes a response; error family; weights | +| `regions` | Per region: `filter` (one-sided formula), `grid`, `habitat_models`, constants | +| `stages` | In order: `name`, `models`, `engine`, `selection`, `ic`, `post_process`, and `carry_as` for the stage carried into the next as `Climate` | +| `habitat_stage` | The stage `replace_stage_method()` replaces by default | +| `resample` | `scheme` and its settings | +| `final_prediction` | Optional. The model scored and projected | +| `v2_coverage` | Per stage, what the spec reproduces of v2. The one place coverage is stated; `report.md` prints it | +| `notes` | Configuration facts, such as whether `Protocol` is fitted | +Fields that a stage's selection rule or resampler takes as arguments +are also accepted, as settings for that method. +## Adding a taxon module +1. Put the v2 scripts as received in `0_data/v2_scripts//` and + log the source and commit in its README. +2. Extend `_setup/01` to write the taxon's response, covariates, + lookups, and any grid or stored draws; extend `_setup/02` to trace + them to the source. +3. Add the taxon's species queue and manifest rows to `_setup/09`, + and re-run it. +4. Splice the v2 candidate formulas into `harness/model_sets.R`, + verbatim. +5. Add `spec.R`, modelled on `lichens/spec.R` (plant group), + `birds/spec.R` or `mammals/spec.R`, and add the run to + `standard_specs()`. If v2 does something no registered method + covers, add one to [`methods/`](../methods/README.md). +6. Add the taxon's published v2 results to `_setup/08`, if + ABMIexploreR publishes them. +7. Check that `validate_spec()` passes and + `Rscript 1_code/tests/run_tests.R` runs clean. Record each + taxon-specific behaviour in + [`docs/taxon_quirks.md`](../../docs/taxon_quirks.md). +‎1_code/tests/README.md‎ ++26Lines changed: 26 additions & 0 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -0,0 +1,26 @@ +# tests +Checks for any change to `harness/`, `methods/` or `modules/`. Run both +from the repository root. +| File | Does | +| --- | --- | +| `run_tests.R` | Loads the framework and runs `testthat/`. Takes seconds. Dataset checks are skipped when the published dataset cannot be reached | +| `compare_stores.R` | Compares two sets of result stores, matched on keys, to a tolerance (default 1e-10) | +| `testthat/test-dataset.R` | Manifest, species queue, covariate keys, bird grid, covariate cache, `covariate_files` joins | +| `testthat/test-methods.R` | Every engine passes `check_engine()`; registry lookups; metrics | +| `testthat/test-new_experiment.R` | Slugs, numbering and scaffolding of `new_experiment()` | +| `testthat/test-results.R` | Shard merging, seeds, spatial CV folds, baseline comparison, draw summaries | +| `testthat/test-specs.R` | Every standard spec validates; `replace_stage_method()`; hurdle; error reporting; `stage_models` | +```sh +Rscript 1_code/tests/run_tests.R +Rscript 1_code/tests/compare_stores.R [max_boot] [file,file] +``` +The tests do not replace the parity check. For a change meant to leave +results alone, run the `parity_check` species at 5 draws to a scratch +folder and compare its stores with exp_000's, as in +[`docs/getting_started.md`](../../docs/getting_started.md#check-that-nothing-broke). +Draws are seeded per species and made in order, so draws 1–5 match +those of a 100-draw run. +‎README.md‎ ++132-922Lines changed: 132 additions & 922 deletions + +Original file line number Original file line Diff line number Diff line change +@@ -12,99 +12,58 @@ +Institute (ABMI). It is intended for internal use. +> +A shared, static cross-taxa test dataset and one modelling pipeline, so that +methods questions for Species Models 3.0 can be asked once and answered for +every taxon, against the same v2.0 baseline. +## Contents +- [Why this repository exists](#why-this-repository-exists) +- [Quick start](#quick-start) +- [Status](#status) +- [How it works](#how-it-works) + - [One pipeline, taxon as configuration](#one-pipeline-taxon-as-configuration) + - [Everything is compared with one v2 baseline](#everything-is-compared-with-one-v2-baseline) + - [What a taxon spec holds](#what-a-taxon-spec-holds) + - [Methods are plug-ins](#methods-are-plug-ins) +- [The experiment pipeline](#the-experiment-pipeline) + - [From run.R to results](#from-runr-to-results) + - [Inside one species job](#inside-one-species-job) + - [Configuring a run](#configuring-a-run) +- [Building the dataset](#building-the-dataset) +- [Directory structure](#directory-structure) +- [Data: `0_data/`](#data-0_data) +- [Outputs: `2_pipeline/` and `3_output/`](#outputs-2_pipeline-and-3_output) +- [Parity gate](#parity-gate) +- [Known gaps](#known-gaps) +- [Adding an experiment](#adding-an-experiment) +- [Contributing a taxon module](#contributing-a-taxon-module) +- [Naming conventions](#naming-conventions) +- [Setup](#setup) +- [Related resources](#related-resources) +- [Contact](#contact) +## Why this repository exists +Species Models are produced one taxon at a time, each by its taxon lead. That +works for production, but it confines R&D to one taxon: a method that improves +plant models may or may not improve bird models, and testing it three times in +three codebases duplicates effort. +This repository holds: +- a **frozen test dataset** of 10–20 focal species per taxon, harmonized to + one format (`0_data/test_dataset/`); +- **one pipeline** that runs every taxon's v2.0 model as configuration rather + than as separate code (`1_code/`); +- **exp_000**, which checks that the pipeline reproduces v2.0, and is the + baseline every later experiment is compared against. +It is for methods research and development. It does not produce the final +species models or reporting products. +## Quick start +New to the repository? Read [`docs/getting_started.md`](docs/getting_started.md) +first: the vocabulary, how to run the baseline, how to read what it writes, +and how to test a change. +```r +source("1_code/harness/harness.R") +load_framework() # the harness, every method, every taxon module +list_methods() # engines, selection rules, resampling, metrics +names(standard_specs()) # the runs an experiment can choose +# The v2 baseline: check the settings at the top of run.R, then +source("1_code/experiments/exp_000_parity_v2/run.R") +``` +| To | Start from | +| --- | --- | +| Run the v2 baseline | `1_code/experiments/exp_000_parity_v2/run.R` | +| Test a methods question | A copy of `1_code/experiments/_template/` | +| Add an engine, selection rule, resampling scheme or metric | [`1_code/methods/README.md`](1_code/methods/README.md) | +| Check a code change broke nothing | `Rscript 1_code/tests/run_tests.R`, then [this check](docs/getting_started.md#check-that-nothing-broke) | -What each folder is for, and what an edit there affects, is in -[`docs/getting_started.md`](docs/getting_started.md#where-things-are). +## Status + +| Component | State | +| --- | --- | +| Test dataset | Built for the four plant-group taxa (bryophytes, lichens, soil mites, vascular plants), mammals and birds. Validated by `_setup/02` | +| v2 reference | Published v2 results harmonized into one table, `0_data/v2_results/` | +| Pipeline | Built: plug-in methods, parallel species, final-model metrics and habitat grids for every taxon, experiment runner, contract tests | +| Taxon specs | Every stage of every taxon runs. What each reproduces of v2 is stated in its spec's `v2_coverage`, printed in `report.md` | +| exp_000 (v2 parity) | At 100 draws on the 14-species `parity_check` set, all 22 taxon × region × stage rows pass the proposed targets. Not yet a gate: see [Parity gate](#parity-gate) | ## How it works -The v2.0 pipelines share one sequence: pick survey units, fit candidate -models, choose among or average them, predict and score. Here each -taxon's contents of those steps are data, in a **spec** -(`1_code/modules//spec.R`). One **harness** runs any spec, and -looks up each **method** (engine, selection rule, resampling scheme, -metric) by the name the spec gives. +**One pipeline, taxon as configuration** + +The three v2.0 pipelines differ in nearly every detail but share one sequence: +pick survey units, fit candidate models, choose among or average them, +predict and score. What differs is the contents of each step. Here those +contents are data, in a **spec** per taxon, and one **harness** runs any spec. +How a model is fitted, selected, resampled or scored is a **method**, looked +up by the name the spec gives. + ```mermaid %% ---------------------------- @@ -105,7 +741,13 @@ flowchart TD style R fill:#E8A396,stroke:#2D415B,stroke-width:4px ``` -### Everything is compared with one v2 baseline +**Everything is compared with one v2 baseline** +`1_code\experiments\exp_000_parity_v2` runs taxon specs that mirror the v2 modelling methods and produce coeefients in parity with the v2 modelling outputs. Results from the `exp_000_parity_v2` thus serve as a baseline that future experiments can be compared to. I.e.: + +exp_000 runs every taxon's v2 spec and checks it against the published +v2.0 output. Every later experiment changes one thing and is compared +with exp_000, so a difference is a difference in method rather than in +plumbing. Because the dataset is frozen, results stay comparable. ```mermaid %% ---------------------------- @@ -150,10 +792,7 @@ flowchart TD style C fill:#E8A396,stroke:#2D415B,stroke-width:4px ``` -exp_000 runs every taxon's v2 spec and checks it against the published -v2.0 output. Every later experiment changes one thing and is compared -with exp_000, so a difference is a difference in method rather than in -plumbing. Because the dataset is frozen, results stay comparable. + The design, the spec and result contracts, and the parity ledger are in [`docs/framework_design.md`](docs/framework_design.md). Every @@ -166,69 +805,7 @@ New to the repository? Work through the [getting-started guide](https://abbiodiversity.github.io/sdmMethodsDev/getting_started.html): prerequisites and data access, running the v2 baseline (exp_000), starting an experiment, adding a taxon module, and checking that a -change broke nothing. Its source is -[`docs/getting_started.md`](docs/getting_started.md). - -## Outputs: `2_pipeline/` and `3_output/` - -Each run writes result stores to `2_pipeline////` -(`coefficients.csv`, `metrics.csv`, `grid_predictions.csv`, -`meta.json`) and `2_pipeline//run_log.csv`. It then writes -summary tables and `run_record.md` to `3_output//`. Every -experiment except exp_000 also writes `tables/comparison_metrics.csv` -against exp_000. The file and column definitions are in -[`1_code/harness/`](1_code/harness/). - -Committed per experiment, by `.gitignore`: `run_record.md`, `report.md`, -and `tables/` `coverage.csv`, `metric_summary.csv`, `grid_summary.csv`, -`parity_summary.csv` and `v2_self_agreement_summary.csv`. Everything else -is rebuilt from the stores with `run_experiment(config, fit = FALSE)`. - -**Commit only runs that count:** every species at `n_bootstraps = 100`. -Check that `run_record.md` says so. - -## Parity gate - -exp_000 runs every taxon's v2 configuration and compares it with the -published v2 coefficients. v2 sets no seed, so parity is distributional: -a term passes when the v2 median falls inside the run's 10–90% band. -Mammals, which v2 fits once, are compared on the full-data fit. The -proposed targets are in -`1_code/experiments/exp_000_parity_v2/utils/parity_targets.R`. - -Before the gate is closed: - -- Agree the parity targets, per taxon, or change them. -- Run the full species queues at 100 draws and commit the report and - record. Only a full run is gated. - -Known gaps: published lichen, mite and vascular plant models were -fitted on draws v2 did not keep, so parity against them stays -distributional; and no parity target has been agreed. Each spec's -`v2_coverage` is the authoritative statement per stage. Details are in -the [exp_000 README](1_code/experiments/exp_000_parity_v2/README.md). - -## Extending the repository - -| To | See | -| --- | --- | -| Add an experiment | `new_experiment("short description")` in `1_code/harness/new_experiment.R`; then [`1_code/experiments/`](1_code/experiments/) and [`docs/getting_started.md`](docs/getting_started.md#test-a-change) | -| Add an engine, selection rule, resampling scheme or metric | [`1_code/methods/README.md`](1_code/methods/README.md) | -| Add a taxon module | [`1_code/modules/`](1_code/modules/) | -| Rebuild or republish the dataset | [`1_code/_setup/`](1_code/_setup/); only maintainers need this | - -## Conventions - -Code follows [code_standards](https://github.com/bgcasey/code_standards): -`snake_case` names, a standard header and numbered sections in every -script, ≤70-character lines, and tidyverse style. - -| Item | Convention | Example | -| --- | --- | --- | -| Experiments | `exp_NNN_short_description`, the same in `1_code/experiments/`, `2_pipeline/` and `3_output/` | `exp_001_xgboost` | -| Sequenced scripts | `NN_` run order; entry points are `run.R` | `06_harmonize_abmiexplorer_results.R` | -| Taxon slugs | As the data files name them | `vascular_plant`, `mite`, `bird` | -| Module folders | Plural taxon name | `vascular_plants/`, `soil_mites/` | +change broke nothing. ## Related resources From ccca1fad5a3bd4144fb9f0dc942fb4fc827bc2ed Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 05:00:31 -0600 Subject: [PATCH 12/19] Add detailed documentation for setup and experiments in README files --- README.md | 653 +----------------------------------------------------- 1 file changed, 4 insertions(+), 649 deletions(-) diff --git a/README.md b/README.md index 7031e0e..89beeb1 100644 --- a/README.md +++ b/README.md @@ -50,645 +50,6 @@ sdmMethodsDev/ └── docs/ # getting started, design, taxon quirks, vignettes ``` -## How it works - -‎1_code/_setup/README.md‎ -+89Lines changed: 89 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -0,0 +1,89 @@ -# _setup -Builds the frozen test dataset and the v2 reference in `0_data/`, then -publishes them to ABMI-DATA2. Run by hand, by maintainers, once per -source snapshot. No experiment runs these scripts: experiments read the -published copies (see `harness/data_source.R`). -The scripts read their external inputs from a mirror on -`//ABMI-DATA2/science/sdmMethodsDev/0_data/setup_inputs/`, through -`utils/input_paths.R`, so anyone with access to that share can -rebuild. -## Run -From the repository root: -```r -source("1_code/_setup/run.R") -``` -`run.R` runs the steps in dependency order, with on/off switches in -section 1.2, and logs timings to `2_pipeline/_setup/run_log.csv`. `00`, -`03` and `10` are off by default. Run order: `01`, `06`, `09`, `02`, -`03`, `07`, `08`, then `10`. There is no `04` or `05`; they were -retired once `08` replaced them. -## Scripts -| Script | Reads | Writes | -| --- | --- | --- | -| `00_mirror_setup_inputs.R` | Every external input, at its original location | `setup_inputs/` on ABMI-DATA2, with `inputs_manifest.csv`. Run once; never overwrites | -| `01_harmonize_model_ready_v2.R` | The `model_ready_v2` snapshot, mammal camera climate, WildTrax species lookup, v2 prediction matrices, bird `Stratified.Rdata` | `0_data/test_dataset/`: responses, `sites.csv`, `covariates.csv`, `bird_offsets.csv`, and most of `lookup/` | -| `02_validate_test_dataset.R` | The test dataset and the same sources | Nothing; prints a pass / fail tally. Run after `01`, `06` and `09` | -| `03_rerun_bryophyte_v2_reference.R` | v2 plant project bryophyte data, frozen v2 functions in `0_data/v2_scripts/plants/` | `2_pipeline/v2_reference/`: `bryophyte-species-models.Rdata`, `bryophyte-bootstrap-ids.Rdata`. Takes hours | -| `06_harmonize_bird_translation_lookup.R` | v2's bird `Xn-veg-v2024.Rdata` | `lookup/bird_veg_age_matrix.csv`. Re-run whenever `01` rebuilds `lookup/` | -| `07_harmonize_v2_plant_bootstrap_ids.R` | v2's stored plant draws; `03`'s bryophyte draws | `lookup/v2_bootstrap_ids//.rds`, for `plant_bootstrap = "v2_ids"` | -| `08_harmonize_abmiexplorer_results.R` | ABMIexploreR's `species-coefs.RData` at a pinned commit; bird `birdlist.csv` | `0_data/external/abmiexplorer//`; `0_data/v2_results/abmiexplorer/v2_results.csv` and `v2_results_coverage.csv` | -| `09_harmonize_lookups.R` | `0_data/test_dataset/lookup/` only; offline, seconds | `species_queue.csv`, `factor_levels.csv`, `dataset_manifest.csv`, bird prediction grids | -| `10_publish_datasets.R` | `0_data/test_dataset/`, `0_data/v2_results/` | A new `/` of each on ABMI-DATA2, with `checksums.csv` and `publish_record.md` | -| `run.R` | The scripts above | Runs them in order | -| `utils/input_paths.R` | | `setup_input()`: paths inside the input mirror | -After `10`, move the pin in `1_code/harness/data_source.R`. A -published version is never overwritten. -## The test dataset -`0_data/test_dataset/` holds the data the v2 models were fitted on. It -does not change between experiments. -| File | Holds | -| --- | --- | -| `sites.csv` | One row per survey unit: identity, design, location, and an `in_` flag per taxon | -| `.csv` | `survey_unit_id` plus one column per species: detections (plants), densities (mammals), counts (birds) | -| `bird_offsets.csv` | QPAD log offsets per survey unit and bird species | -| `covariates.csv` | Every covariate for every taxon, keyed on `survey_unit_id` and a taxon covariate key | -| `lookup/dataset_manifest.csv` | Per taxon and region: files, covariate key, grid and stored draws. The harness reads file locations only from here | -| `lookup/species_queue.csv` | Every taxon's species queue in one schema | -| `lookup/covariate_columns.csv` | Each covariate's block and v2 spelling, per taxon | -| `lookup/factor_levels.csv` | Source order of categorical levels, so contrasts match v2 | -| `lookup/*_prediction_matrix.csv` | Habitat grids: one row per habitat type, a pure stand | -| `lookup/bird_bootstrap_ids.csv`, `lookup/v2_bootstrap_ids/` | v2's stored draws: birds, and plants per species | -| `lookup/mammal_climate_predictions.csv` | v2's precomputed mammal climate prediction | -| `lookup/bird_veg_age_matrix.csv` | v2's bird landcover translation matrix | -Columns in more than one block are suffixed (`HardLin_veg`, -`HardLin_soil`). Ten derived columns (`TD`, `MAT2`, `Easting2` and -others) are computed on load, not stored. Taxon-specific details are in -[`docs/taxon_quirks.md`](../../docs/taxon_quirks.md). -## Environment variables -Each overrides a default path. -| Variable | Read by | Points at | -| --- | --- | --- | -| `SDM_SETUP_INPUT_ROOT` | `00`–`08` | The input mirror | -| `SDM_SNAPSHOT_V2` | `01`, `02` | The `model_ready_v2` snapshot folder | -| `SDM_MAMMAL_CAMERA_CLIMATE` | `01` | `abmi-camera-climate_2023.Rdata` | -| `SDM_MAMMAL_CLIMATE_PRED` | `01`, `02` | `All Species Climate Predictions.csv` | -| `SDM_V2_LOOKUP` | `01` | The v2 folder holding the plant prediction matrices | -| `SDM_WT_SPECIES` | `01` | `WildTrax Species Strings.RData` | -| `SDM_BIRD_DATA` | `01`, `02` | The bird `Stratified.Rdata` v2 was fitted on | -| `SDM_V2_PROJECT` | `03`, `07` | The v2 plant project (`VegetationModels`) | -| `SDM_V2_BIRD_ROOT` | `06` | The v2 bird project (`BirdModels`) | -| `SDM_V2_BOOT_TAXA`, `SDM_V2_BOOT_SPECIES` | `07` | Comma-separated subsets to copy | -| `SDM_ABMIEXPLORER_SHA` | `08` | The ABMIexploreR commit to download | -| `SDM_V2_BIRD_LOOKUP` | `08` | The v2 bird `birdlist.csv` | -| `SDM_SHARE_ROOT`, `SDM_DATASET_VERSION`, `SDM_PUBLISH` | `10` | Publish root, version folder (default today, `YYYY-MM-DD`), datasets | -‎1_code/experiments/README.md‎ -+46Lines changed: 46 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -0,0 +1,46 @@ -# experiments -One folder per methods question, keyed `exp_NNN_short_description`. -Each folder has a `run.R` entry point that calls `experiment_config()` -and `run_experiment()` (see the [harness README](../harness/README.md)), -and a `README.md` stating the question. The same id names the -experiment's folders in `2_pipeline/` and `3_output/`. -| Folder | Holds | Status | -| --- | --- | --- | -| `_shared/` | `focal_species.R`: `focal_species_sets()`, the named species sets (`full`, `parity_check`, `plants_only`, `one_each`) | | -| `_template/` | The `run.R` and `README.md` that `new_experiment()` fills in | | -| [`exp_000_parity_v2/`](exp_000_parity_v2/README.md) | The v2 parity check and the baseline for every other experiment | Not yet a gate | -| [`exp_001_xgboost/`](exp_001_xgboost/README.md) | Habitat stage fitted with xgboost, every taxon | Test; 5-draw check only | -| [`exp_002_soilgrids/`](exp_002_soilgrids/README.md) | SoilGrids 0–5 cm terms in the climate stage, plants and birds | Test; 5-draw check only | -exp_000 is the required gate before iterative R&D: every other -experiment is compared against its tables. -## Adding an experiment -1. Scaffold it from the repository root: - ```r - source("1_code/harness/new_experiment.R") - new_experiment("covariate scale") # dry_run = TRUE to preview - ``` - This takes the next free number across `1_code/experiments/`, - `2_pipeline/` and `3_output/`, copies `_template/` with the id, - title, author and date filled in, and creates - `2_pipeline//logs/` and `3_output//` with `figures/`, - `tables/` and a stub `report.md`. Leave `id` in `run.R` as it is. -2. State the question and design in its `README.md`. -3. Change one thing relative to exp_000: `stage_models`, - `covariate_files` or `specs`. Keep exp_000's species, draws and seed - unless they are the question. -4. Never add columns to `0_data/` or change `_setup/` for an - experiment. Covariates the dataset lacks are written by a script in - the experiment's folder to `2_pipeline//inputs/` and named in - `covariate_files`; `exp_002_soilgrids` is the example. -5. Run it at 5 draws to check it works, then at 100. Compare it with - an exp_000 run at the same number of draws. -Each lever is walked through in -[`docs/getting_started.md`](../../docs/getting_started.md#test-a-change). -‎1_code/experiments/exp_000_parity_v2/README.md‎ -+108-237Lines changed: 108 additions & 237 deletions - -Large diffs are not rendered by default. -‎1_code/experiments/exp_001_xgboost/README.md‎ -+14-7Lines changed: 14 additions & 7 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -24,7 +24,8 @@ draws with tuned settings. - - - -- **What changes:** the habitat stage's engine, selection rule and - -- **What changes:** the habitat stage's engine, selection rule and - candidate set. `run.R` makes the change with one call for every run: - - candidate set. `run.R` makes the change with one call for every run: - `lapply(standard_specs(), replace_stage_method, engine = "xgboost")`. - - `lapply(standard_specs(), replace_stage_method, engine = "xgboost", - control = xgb_settings)`. -- **Why one formula:** a tree chooses its own variables, splits and - -- **Why one formula:** a tree chooses its own variables, splits and - interactions, so it is given every candidate covariate once (as main - - interactions, so it is given every candidate covariate once (as main - effects) rather than v2's competing formulas. - - effects) rather than v2's competing formulas. -@@ -54,6 +55,11 @@ From the repository root: -source("1_code/experiments/exp_001_xgboost/run.R") - -source("1_code/experiments/exp_001_xgboost/run.R") -``` - -``` - - - -It reads the published test dataset and exp_000's -`3_output/exp_000_parity_v2/tables/`, and writes stores to -`2_pipeline/exp_001_xgboost/` and summaries to -`3_output/exp_001_xgboost/`. -`run.R` uses 5 draws to check the pipeline. For a result, set - -`run.R` uses 5 draws to check the pipeline. For a result, set -`n_bootstraps = 100`, and make sure the exp_000 tables it is compared - -`n_bootstraps = 100`, and make sure the exp_000 tables it is compared -against are from a 100-draw run of the same species. - -against are from a 100-draw run of the same species. -@@ -73,9 +79,10 @@ GLM does, so in-sample metrics would flatter it. -## Assumptions and caveats - -## Assumptions and caveats - - - -- **The xgboost settings are untuned.** At most 1000 rounds, learning - -- **The xgboost settings are untuned.** At most 1000 rounds, learning - rate 0.05, depth 3, subsample 0.5, minimum child weight 1. The number of - - rate 0.05, depth 3, subsample 0.5, minimum child weight 1 (`run.R` - rounds is chosen by early stopping on a seeded 20% holdout of each draw, - - section 1.2). The number of rounds is chosen by early stopping on a - then the model is refitted on all of the draw. A fair comparison tunes - - seeded 20% holdout of each draw, then the model is refitted on all of - the draw. A fair comparison tunes - these, ideally per taxon. - - these, ideally per taxon. -- **The grid compares like with like only roughly.** The grid holds each - -- **The grid compares like with like only roughly.** The grid holds each - habitat type as a pure stand at `Climate` 0. A GLM extrapolates to that - - habitat type as a pure stand at `Climate` 0. A GLM extrapolates to that -@@ -93,9 +100,9 @@ GLM does, so in-sample metrics would flatter it. -- **Bird counts keep the QPAD offset**, which the engine passes as the - -- **Bird counts keep the QPAD offset**, which the engine passes as the - base margin in fitting and prediction. - - base margin in fitting and prediction. -- **gbm was replaced.** The first version of this experiment - -- **gbm was replaced.** The first version of this experiment - (`exp_001_gbm`, 2026-10-03; its output is kept in - - (`exp_001_gbm`, 2026-10-03) used `gbm`, which cannot fit the mammal - `3_output/exp_001_gbm/`) used `gbm`, which cannot fit the mammal hurdle: - - hurdle: its bernoulli rejects a 0–1 proportion and it has no Gamma - its bernoulli rejects a 0–1 proportion and it has no Gamma family. - - family. - - - -## Result - -## Result - - - -‎1_code/experiments/exp_002_soilgrids/README.md‎ -+5Lines changed: 5 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -75,6 +75,11 @@ reads the layer from the `//ABMI-DATA2` share; set `SDM_SOILGRIDS` to a local -copy of the raster to read it from there instead. Delete the file to extract - -copy of the raster to read it from there instead. Delete the file to extract -again. - -again. - - - -It also reads the published test dataset and exp_000's -`3_output/exp_000_parity_v2/tables/`, and writes stores to -`2_pipeline/exp_002_soilgrids/` and summaries to -`3_output/exp_002_soilgrids/`. -`run.R` uses 5 draws to check the pipeline. For a result, set - -`run.R` uses 5 draws to check the pipeline. For a result, set -`n_bootstraps = 100` and compare against a 100-draw exp_000. - -`n_bootstraps = 100` and compare against a 100-draw exp_000. - - - -‎1_code/harness/README.md‎ -+123Lines changed: 123 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -0,0 +1,123 @@ -# harness -The shared pipeline. It names no taxon and no method: taxon modules -supply specs, `methods/` supplies what the specs name, and the harness -runs them. A change here affects every experiment, past and future; -review it as such and check it with [`1_code/tests/`](../tests/). -Load everything with: -```r -source("1_code/harness/harness.R") -load_framework() # harness/, methods/, modules/, experiments/_shared/ -``` -`new_experiment.R` is the exception: it is base R and runs without -`load_framework()`. -## Files -| File | Holds | -| --- | --- | -| `harness.R` | `load_framework()`: sources the harness, methods, modules and `experiments/_shared/`, in that order | -| `experiment.R` | `experiment_config()`, `run_experiment()`, `script_step()` | -| `new_experiment.R` | `new_experiment()`: scaffold an experiment's three folders | -| `data_source.R` | The pinned published dataset versions; `test_dataset_dir()`, `v2_results_dir()`, `verify_published()` | -| `data_load.R` | `lookup/dataset_manifest.csv`, loaders, `covariate_files` joins, model frames | -| `cache.R` | Session cache for dataset reads | -| `covariate_sets.R` | Named covariate sets, derived columns, term renaming | -| `model_sets.R` | v2 candidate formulas, spliced verbatim; `extend_models()`, `models_from_covariates()` | -| `spec.R` | `validate_spec()`, `apply_stage_models()`, `replace_stage_method()` | -| `registry.R` | `register_engine()` and the other `register_*()`; `list_methods()` | -| `engines.R` | Engine interface and `check_engine()` | -| `selection.R` | Plumbing for selection rules: `fit_candidates()`, `combined_predictor()`, `selection_result()` | -| `resample.R` | Per-species seeds, `with_seed()`, spatial blocks | -| `species.R` | Species lists and focal-species resolution | -| `predict_grid.R` | Projects a final model onto a habitat grid | -| `eval_metrics.R` | Scores a prediction with every registered metric | -| `run_model.R` | `run_specs()`: prepare each spec, fit species in parallel, merge shards | -| `result.R` | The result store: writes and reads its files | -| `summarise.R` | `collect_results()`: stores to summary tables | -| `compare.R` | `compare_experiments()`: one experiment against another | -| `run_record.R` | `run_record()`: writes `run_record.md` | -## What `run_experiment()` does -1. **Configure.** `experiment_config()` checks every decision before - anything is fitted. -2. **Fit.** Every spec is validated and each region's data and grid - are loaded once. Each species is one job; with `workers` above 1, - jobs run in parallel R sessions. Each species draws under its own - seed, so results do not depend on the worker count. A failed - species or draw is logged and the run continues. -3. **Store.** Shards are merged into one store per run and region in - `2_pipeline//`, plus `run_log.csv`. -4. **Summarize.** `collect_results()` writes `3_output//tables/`. -5. **Compare.** Every experiment except the baseline writes - `tables/comparison_metrics.csv` against exp_000. -6. **Steps.** The experiment's own `steps`, in order. -7. **Record.** `run_record.md`. -`run_experiment(config, fit = FALSE)` re-summarizes existing stores. -Nothing outside `2_pipeline//` and `3_output//` is written. -## `experiment_config()` arguments -| Argument | Default | Sets | -| --- | --- | --- | -| `id` | | Folder name under `2_pipeline/` and `3_output/` | -| `taxa` | all | Runs, from `names(standard_specs())` | -| `species` | every species | A `focal_species_sets()` name, or a vector named by taxon | -| `n_bootstraps` | `100` | Draws per species; v2 used 100. 5 checks a run works | -| `seed` | `20260909` | Base seed; `NULL` leaves draws unseeded, as v2 did | -| `stage_models` | v2's | Replacement candidate sets, keyed `stage` or `taxon.stage` | -| `covariate_files` | none | CSVs of extra covariates keyed on `survey_unit_id` | -| `specs` | `standard_specs()` | Changed specs, such as a different engine or rule | -| `plant_bootstrap` | `"spatial_block"` | `"v2_ids"` replays v2's stored plant draws | -| `workers` | `1` | Species fitted at once | -| `unit_predictions` | `"none"` | `"oob"` or `"all"` writes per-unit predictions | -| `baseline` | `"exp_000_parity_v2"` | Experiment to compare with; `NULL` skips | -| `v2_bootstraps` | `100` | Draws a run needs to be gated | -| `project_root`, `data_dir`, `pipeline_dir`, `out_dir` | derived | Path overrides | -## Outputs -A *draw* is one bootstrap iteration; draw 1 is the full data. Every -summary reduces draws to `median`, `p10` and `p90` (what comparisons -read), plus `mean`, `sd`, `n` and `boot1` (the draw-1 value). -### Result stores: `2_pipeline////` -| File | Holds | -| --- | --- | -| `coefficients.csv` | Every stage's coefficients per species, draw and term | -| `metrics.csv` | Metrics per species and draw | -| `grid_predictions.csv` | The final model's prediction for each habitat type | -| `unit_predictions.csv` | Only with `unit_predictions = "oob"` or `"all"`; several GB for birds | -| `meta.json` | Stages, engines, rules, covariates, resampling, seed, overrides | -`2_pipeline//run_log.csv` records every species, region and draw: -`ok`, or why not. -### Summary tables: `3_output//tables/` -| File | One row per | Notes | -| --- | --- | --- | -| `coverage.csv` | run × region | Species, draws and stages written; `species = 0` means nothing ran (see `run_log.csv`) | -| `metric_summary.csv` | taxon × region × species × metric | Prefixes: `insample_`, `oob_` (held-out; NA for draw 1), `v2val_` and `oob_v2val_` (v2's seven plant validation AUCs) | -| `grid_summary.csv` | taxon × region × species × `grid_unit` | Response scale; pure stand at the stage's constants (`Climate` 0) | -| `coefficient_summary.csv` | run × region × stage × species × term | Gitignored. Term meaning varies by taxon and stage | -| `comparison_metrics.csv` | species × metric | Against exp_000; both sides' summaries, the difference, and whether this run did better. Gitignored | -Metrics: `auc`, `deviance_explained`, `rmse`, `spearman`, -`calibration_slope`, `prevalence`, `n`. They score each run's final -model, so for plants `insample_auc` equals `v2val_Full`. "Better" is -higher AUC, deviance explained and Spearman, lower RMSE, and a -calibration slope closer to 1. -## Data access -Runs read the published dataset versions pinned in `data_source.R` -(`sdm_published$versions`), on `//ABMI-DATA2/science/sdmMethodsDev/0_data/`. -Set `SDM_TEST_DATASET` or `SDM_V2_RESULTS` to read another copy. Each -call checks file presence and size; `verify_published()` checks md5. -‎1_code/methods/README.md‎ -+8-6Lines changed: 8 additions & 6 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -71,7 +71,8 @@ such as `xgboost`'s `objective = "binary:logistic"`, translates it. -### Testing an engine - -### Testing an engine - - - -```r - -```r -check_engine(engine_mine()) - -check_engine(my_engine()) # a definition, or a registered name -check_engine("glm") -``` - -``` - - - -`check_engine()` fits small synthetic binomial and Poisson data, - -`check_engine()` fits small synthetic binomial and Poisson data, -@@ -81,14 +82,15 @@ the engine meets the dataset. - - - -### Which rules an engine can use - -### Which rules an engine can use - - - -An engine without an information criterion or coefficients - a - -An engine without an information criterion or coefficients (a -boosted regression tree, a random forest - can still run any - -boosted regression tree, a random forest) can still run any -stage, using the `single` rule: one formula, fitted as given. To - -stage, using the `single` rule: one formula, fitted as given. To -compare it with v2 on a stage v2 fits with model averaging, - -compare it with v2 on a stage v2 fits with model averaging, -replace that stage's engine, selection and models together. The - -replace that stage's engine, selection and models together. The -v2 post-processing steps that read coefficients (the plant - -v2 post-processing steps that read coefficients (the plant -stand-age splines, say) then do not apply, and the stage should - -stand-age splines, say) then do not apply, and the stage should -drop them; see `docs/getting_started.md`. - -drop them; see -[`docs/getting_started.md`](../../docs/getting_started.md#2-a-different-engine-or-rule-specs). - - - -`replace_stage_method()` does all of this in one call. Its stage - -`replace_stage_method()` does all of this in one call. Its stage -defaults to the spec's `habitat_stage`, so the same call serves - -defaults to the spec's `habitat_stage`, so the same call serves -@@ -99,8 +101,8 @@ specs <- lapply(standard_specs(), replace_stage_method, - engine = "xgboost") - - engine = "xgboost") -``` - -``` - - - -A **composite** rule - one that declares `part_selection`, as - -A **composite** rule (one that declares `part_selection`, as -`hurdle` does - keeps its place, and the new rule becomes the one - -`hurdle` does) keeps its place, and the new rule becomes the one -each part runs. The mammal hurdle's structure (presence on every - -each part runs. The mammal hurdle's structure (presence on every -unit, abundance where the species was found) is a property of the - -unit, abundance where the species was found) is a property of the -data, so it stays; the new engine fits both halves, and v2's - -data, so it stays; the new engine fits both halves, and v2's -‎1_code/modules/README.md‎ -+78Lines changed: 78 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -0,0 +1,78 @@ -# modules -One v2 spec per taxon. A module holds configuration, not modelling -code: it states what v2 does for a taxon as a spec list, and the -[harness](../harness/) runs it. A change here affects every -experiment; review it as such. -`load_framework()` sources `_shared/` first, then every other folder, -each in file-name order. -## Files -| Folder | File | Defines | -| --- | --- | --- | -| `_shared/` | `plant_group.R` | `plant_group_spec()`, the builder for the four plant-group taxa, and their v2 post-processing (`plant_age_splines()`, `plant_cutblock_convergence()`, `plant_paspen()`, `plant_footprint_pooling()`) | -| `_shared/` | `standard_specs.R` | `standard_specs(plant_bootstrap)`: every run in its v2 configuration | -| `bryophytes/` | `spec.R` | `bryophyte_spec(use_protocol, bootstrap)` | -| `lichens/` | `spec.R` | `lichen_spec(use_protocol, bootstrap)` | -| `soil_mites/` | `spec.R` | `soil_mite_spec(use_protocol, bootstrap)` | -| `vascular_plants/` | `spec.R` | `vascular_plant_spec(use_protocol, bootstrap)` | -| `mammals/` | `spec.R` | `mammal_spec(climate_source, season, tier)` | -| `mammals/` | `hurdle.R` | v2's hurdle tables: presence and abundance effects, splines, calibration, convergence | -| `birds/` | `spec.R` | `bird_spec()` | -| `birds/` | `standardize.R` | `bird_habitat_translation()`: landcover coefficients onto v2's standardized habitat types (port of v2's `08.PackageCoefficients.R`) | -`standard_specs()` returns seven runs: `bryophyte`, `lichen`, `mite`, -`vascular_plant`, `mammal_summer`, `mammal_winter` and `bird`. -## The module interface -A taxon module must: -1. Define a function `_spec(...)` in - `modules//spec.R` that returns a spec list. -2. Return a spec that passes `validate_spec()`. Unknown fields are - errors, and every named engine, rule and resampler must be - registered. -3. Add its run to `standard_specs()` in `_shared/standard_specs.R`. -Spec fields the harness reads (full list: `spec_fields()` in -`harness/spec.R`): -| Field | Sets | -| --- | --- | -| `taxon` | Data slug that keys the response file, covariates and lookups | -| `response_name`, `response_transform`, `family`, `weight_column` | How the recorded value becomes a response; error family; weights | -| `regions` | Per region: `filter` (one-sided formula), `grid`, `habitat_models`, constants | -| `stages` | In order: `name`, `models`, `engine`, `selection`, `ic`, `post_process`, and `carry_as` for the stage carried into the next as `Climate` | -| `habitat_stage` | The stage `replace_stage_method()` replaces by default | -| `resample` | `scheme` and its settings | -| `final_prediction` | Optional. The model scored and projected | -| `v2_coverage` | Per stage, what the spec reproduces of v2. The one place coverage is stated; `report.md` prints it | -| `notes` | Configuration facts, such as whether `Protocol` is fitted | -Fields that a stage's selection rule or resampler takes as arguments -are also accepted, as settings for that method. -## Adding a taxon module -1. Put the v2 scripts as received in `0_data/v2_scripts//` and - log the source and commit in its README. -2. Extend `_setup/01` to write the taxon's response, covariates, - lookups, and any grid or stored draws; extend `_setup/02` to trace - them to the source. -3. Add the taxon's species queue and manifest rows to `_setup/09`, - and re-run it. -4. Splice the v2 candidate formulas into `harness/model_sets.R`, - verbatim. -5. Add `spec.R`, modelled on `lichens/spec.R` (plant group), - `birds/spec.R` or `mammals/spec.R`, and add the run to - `standard_specs()`. If v2 does something no registered method - covers, add one to [`methods/`](../methods/README.md). -6. Add the taxon's published v2 results to `_setup/08`, if - ABMIexploreR publishes them. -7. Check that `validate_spec()` passes and - `Rscript 1_code/tests/run_tests.R` runs clean. Record each - taxon-specific behaviour in - [`docs/taxon_quirks.md`](../../docs/taxon_quirks.md). -‎1_code/tests/README.md‎ -+26Lines changed: 26 additions & 0 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -0,0 +1,26 @@ -# tests -Checks for any change to `harness/`, `methods/` or `modules/`. Run both -from the repository root. -| File | Does | -| --- | --- | -| `run_tests.R` | Loads the framework and runs `testthat/`. Takes seconds. Dataset checks are skipped when the published dataset cannot be reached | -| `compare_stores.R` | Compares two sets of result stores, matched on keys, to a tolerance (default 1e-10) | -| `testthat/test-dataset.R` | Manifest, species queue, covariate keys, bird grid, covariate cache, `covariate_files` joins | -| `testthat/test-methods.R` | Every engine passes `check_engine()`; registry lookups; metrics | -| `testthat/test-new_experiment.R` | Slugs, numbering and scaffolding of `new_experiment()` | -| `testthat/test-results.R` | Shard merging, seeds, spatial CV folds, baseline comparison, draw summaries | -| `testthat/test-specs.R` | Every standard spec validates; `replace_stage_method()`; hurdle; error reporting; `stage_models` | -```sh -Rscript 1_code/tests/run_tests.R -Rscript 1_code/tests/compare_stores.R [max_boot] [file,file] -``` -The tests do not replace the parity check. For a change meant to leave -results alone, run the `parity_check` species at 5 draws to a scratch -folder and compare its stores with exp_000's, as in -[`docs/getting_started.md`](../../docs/getting_started.md#check-that-nothing-broke). -Draws are seeded per species and made in order, so draws 1–5 match -those of a 100-draw run. -‎README.md‎ -+132-922Lines changed: 132 additions & 922 deletions - -Original file line number Original file line Diff line number Diff line change -@@ -12,99 +12,58 @@ -Institute (ABMI). It is intended for internal use. -> -A shared, static cross-taxa test dataset and one modelling pipeline, so that -methods questions for Species Models 3.0 can be asked once and answered for -every taxon, against the same v2.0 baseline. -## Contents -- [Why this repository exists](#why-this-repository-exists) -- [Quick start](#quick-start) -- [Status](#status) -- [How it works](#how-it-works) - - [One pipeline, taxon as configuration](#one-pipeline-taxon-as-configuration) - - [Everything is compared with one v2 baseline](#everything-is-compared-with-one-v2-baseline) - - [What a taxon spec holds](#what-a-taxon-spec-holds) - - [Methods are plug-ins](#methods-are-plug-ins) -- [The experiment pipeline](#the-experiment-pipeline) - - [From run.R to results](#from-runr-to-results) - - [Inside one species job](#inside-one-species-job) - - [Configuring a run](#configuring-a-run) -- [Building the dataset](#building-the-dataset) -- [Directory structure](#directory-structure) -- [Data: `0_data/`](#data-0_data) -- [Outputs: `2_pipeline/` and `3_output/`](#outputs-2_pipeline-and-3_output) -- [Parity gate](#parity-gate) -- [Known gaps](#known-gaps) -- [Adding an experiment](#adding-an-experiment) -- [Contributing a taxon module](#contributing-a-taxon-module) -- [Naming conventions](#naming-conventions) -- [Setup](#setup) -- [Related resources](#related-resources) -- [Contact](#contact) -## Why this repository exists -Species Models are produced one taxon at a time, each by its taxon lead. That -works for production, but it confines R&D to one taxon: a method that improves -plant models may or may not improve bird models, and testing it three times in -three codebases duplicates effort. -This repository holds: -- a **frozen test dataset** of 10–20 focal species per taxon, harmonized to - one format (`0_data/test_dataset/`); -- **one pipeline** that runs every taxon's v2.0 model as configuration rather - than as separate code (`1_code/`); -- **exp_000**, which checks that the pipeline reproduces v2.0, and is the - baseline every later experiment is compared against. -It is for methods research and development. It does not produce the final -species models or reporting products. -## Quick start -New to the repository? Read [`docs/getting_started.md`](docs/getting_started.md) -first: the vocabulary, how to run the baseline, how to read what it writes, -and how to test a change. -```r -source("1_code/harness/harness.R") -load_framework() # the harness, every method, every taxon module -list_methods() # engines, selection rules, resampling, metrics -names(standard_specs()) # the runs an experiment can choose -# The v2 baseline: check the settings at the top of run.R, then -source("1_code/experiments/exp_000_parity_v2/run.R") -``` -| To | Start from | -| --- | --- | -| Run the v2 baseline | `1_code/experiments/exp_000_parity_v2/run.R` | -| Test a methods question | A copy of `1_code/experiments/_template/` | -| Add an engine, selection rule, resampling scheme or metric | [`1_code/methods/README.md`](1_code/methods/README.md) | -| Check a code change broke nothing | `Rscript 1_code/tests/run_tests.R`, then [this check](docs/getting_started.md#check-that-nothing-broke) | - -## Status - -| Component | State | -| --- | --- | -| Test dataset | Built for the four plant-group taxa (bryophytes, lichens, soil mites, vascular plants), mammals and birds. Validated by `_setup/02` | -| v2 reference | Published v2 results harmonized into one table, `0_data/v2_results/` | -| Pipeline | Built: plug-in methods, parallel species, final-model metrics and habitat grids for every taxon, experiment runner, contract tests | -| Taxon specs | Every stage of every taxon runs. What each reproduces of v2 is stated in its spec's `v2_coverage`, printed in `report.md` | -| exp_000 (v2 parity) | At 100 draws on the 14-species `parity_check` set, all 22 taxon × region × stage rows pass the proposed targets. Not yet a gate: see [Parity gate](#parity-gate) | - ## How it works **One pipeline, taxon as configuration** @@ -742,6 +103,7 @@ flowchart TD ``` **Everything is compared with one v2 baseline** + `1_code\experiments\exp_000_parity_v2` runs taxon specs that mirror the v2 modelling methods and produce coeefients in parity with the v2 modelling outputs. Results from the `exp_000_parity_v2` thus serve as a baseline that future experiments can be compared to. I.e.: exp_000 runs every taxon's v2 spec and checks it against the published @@ -793,12 +155,6 @@ flowchart TD ``` - -The design, the spec and result contracts, and the parity ledger are in -[`docs/framework_design.md`](docs/framework_design.md). Every -taxon-specific v2 behaviour is in -[`docs/taxon_quirks.md`](docs/taxon_quirks.md). - ## Getting started New to the repository? Work through the @@ -807,12 +163,11 @@ prerequisites and data access, running the v2 baseline (exp_000), starting an experiment, adding a taxon module, and checking that a change broke nothing. + ## Related resources -- [sciCentRverse](https://github.com/ABbiodiversity/sciCentRverse): - Science Centre R functions. -- [sciSpatialR](https://github.com/ABbiodiversity/sciSpatialR): - Science Centre spatial catalogue. +- [sciCentRverse](https://github.com/ABbiodiversity/sciCentRverse): Science Centre R functions +- [sciSpatialR](https://github.com/ABbiodiversity/sciSpatialR): Science Centre spatial catalogue ## Contact From fd6be5021c495986f3028e19d98d996250fdde6b Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 05:03:50 -0600 Subject: [PATCH 13/19] Add table of contents to README for improved navigation --- README.md | 14 +++++++++++++- 1 file changed, 13 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 89beeb1..9da5cb1 100644 --- a/README.md +++ b/README.md @@ -19,7 +19,19 @@ runs every taxon's v2.0 model as a configuration, and a v2 parity check -**Why this exists** + + +## Contents + +- [Why this exists](#why-this-exists) +- [Repository structure](#repository-structure) +- [How it works](#how-it-works) +- [Getting started](#getting-started) +- [Related resources](#related-resources) +- [Contact](#contact) + +## Why this exists + Species Models are produced one taxon at a time, each by its taxon lead. That works for production, but it confines R&D to one taxon: a method that improves plant models may or may not improve bird models, and testing it three times in From a9a3c089b762268813390ce4038fc244b36991d2 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 05:19:07 -0600 Subject: [PATCH 14/19] Update index.md for clarity and consistency in language --- docs/index.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/docs/index.md b/docs/index.md index ee22c43..15abc74 100644 --- a/docs/index.md +++ b/docs/index.md @@ -5,15 +5,14 @@ The ABMI Science Centre's shared R&D repository for Species Models taxon's v2.0 model as configuration, and a v2 parity check that every later experiment is compared against. -This site is for Science Centre modellers. It is intended for +This site is for the Science Centre modelling team. It is intended for internal use. - **New here?** Start with [Getting started](getting_started.md): setup, running the v2 baseline, starting an experiment, and adding a taxon module. - **Adding an experiment?** Follow a worked example: - [new covariates](example_experiment.md) (`exp_002_soilgrids`) - or [a different method](example_experiment_xgboost.md) - (`exp_001_xgboost`). + [new covariates](example_experiment.md) + or a [different modelling method](example_experiment_xgboost.md). - **The code and the full documentation** are in the [repository](https://github.com/ABbiodiversity/sdmMethodsDev). From e9def40c728b467d58148f900a69b69418e2414c Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 06:47:22 -0600 Subject: [PATCH 15/19] Refactor getting_started.md for clarity and conciseness --- docs/getting_started.md | 101 +++++++++------------------------------- 1 file changed, 23 insertions(+), 78 deletions(-) diff --git a/docs/getting_started.md b/docs/getting_started.md index 8ba99f6..c3ec248 100644 --- a/docs/getting_started.md +++ b/docs/getting_started.md @@ -1,14 +1,8 @@ # Getting started with sdmMethodsDev -This guide takes you from a fresh clone to a run of the v2 -baseline, and then to your first experiment or module change. It -assumes you know R, species distribution models, and spatial -analysis. It does not assume you know this repository or how the -v2.0 models were built. Work through it in order; it takes under -an hour, plus run time. +Starting guide to the `sdmMethodsDev` R&D repository. + -Run every code block from the repository root. Lines starting -`#>` are the output the block printed when this guide was written. - [What this repository is for](#what-this-repository-is-for) - [Setup](#setup) @@ -23,15 +17,13 @@ Run every code block from the repository root. Lines starting ## What this repository is for `sdmMethodsDev` is the Science Centre's shared R&D repository for -Species Models 3.0. It holds a frozen cross-taxa test dataset, one +Species Models 3.0. It generates and calls a frozen cross-taxa test dataset from `ABMI-DATA2\science\`, one pipeline that runs every taxon's v2.0 model as configuration, and a v2 parity check (`exp_000_parity_v2`) that every later -experiment is compared against. A methods question is asked once -and answered for every taxon. +experiment is compared against. A methods question can be asked and answered for every taxon. It is for testing methods. It does not produce the final species -models or reporting products. The status, structure, and design -summary are in the [root README][readme]. +models or reporting products. ### Words used throughout @@ -45,7 +37,7 @@ summary are in the [root README][readme]. | **Method** | A named, registered piece: an engine (`glm`, `bayesglm`, `xgboost`), a selection rule (`aic_average`, `staged_bic`, `ivw_grid`), a resampling scheme, or a metric. | | **Draw** | One bootstrap resample of the survey units. v2 uses 100. Draw 1 is the full data. | | **Store** | The results for one run and region: `coefficients.csv`, `metrics.csv`, `grid_predictions.csv`, `meta.json`. | -| **Grid** | A prediction matrix with one row per habitat type, each row a pure stand of that type. Predicting onto it lets methods without coefficients be compared. | +| **Grid** | A prediction matrix with one row per habitat type, each row a pure stand of that type. Predicting onto it lets methods be compared. | | **Out-of-bag (oob)** | Scored on the survey units a draw left out. `insample` scores the units the draw fitted. | | **Parity** | Whether a run reproduces v2. Distributional, not numerical: v2 sets no seed, so two v2 runs differ. | @@ -53,31 +45,10 @@ summary are in the [root README][readme]. ### Prerequisites -You need R 4.4 or later. Open the repository in RStudio or +You need R 4.4 or later. Open the repository in VS Code, RStudio or Positron so the working directory is the repository root. Every path in this guide, and every script, assumes that. -The repository has no `renv.lock` or `DESCRIPTION`, so packages -are installed by hand. These are the packages the -[root README][readme-prereq] lists: - -```r -install.packages(c( - "data.table", "arm", "mgcv", "MuMIn", "pROC", # harness, methods - "jsonlite", "ggplot2", # summaries, figures - "xgboost", # xgboost engine - "testthat", "withr" # 1_code/tests/ -)) -``` - -`exp_002_soilgrids` also needs `sf`, `terra`, and -[sciSpatialR](https://github.com/ABbiodiversity/sciSpatialR). -Maintainers rebuilding the dataset with `_setup/03` also need -`foreach`, `AICcmodavg`, `binom`, `mapproj`, and `RcmdrMisc`. - -> **TODO:** confirm with Brendan Casey whether package versions -> will be pinned (for example with `renv`). Until then, the version -> comments in each script's `library()` calls are the only record. ### Getting the data @@ -97,10 +68,7 @@ the test dataset's file index is `lookup/dataset_manifest.csv`. The harness reads file locations only from that manifest. So the one requirement is **read access to the share**, on the -ABMI network or VPN. - -> **TODO:** confirm with Brendan Casey how new staff request read -> access to `//ABMI-DATA2/science/sdmMethodsDev/` and the VPN. +ABMI network or VPN.0000 Off the network, copy the two published folders to your machine and point the harness at them. The variables can also go in your @@ -147,19 +115,9 @@ file.exists(c( is slow over the network (about 0.9 GB), so use it only when a copy is in doubt. -Last, run the contract tests from a terminal at the repository -root. They take seconds, and skip the dataset checks if the share -cannot be reached. - -```sh -Rscript 1_code/tests/run_tests.R -``` - -If the tests pass and both files exist, you are ready to run. - ## How the pipeline fits together -The v2.0 pipelines share one sequence: pick survey units, fit +The v2.0 pipelines share one sequence: choose response, fit candidate models, choose among or average them, then predict and score. What differs between taxa is the contents of each step. Here, those contents are data in a **spec**, and one **harness** @@ -262,9 +220,11 @@ The full argument list and output file definitions are in the `exp_000_parity_v2` runs each taxon's v2 spec and compares the result with the published v2 coefficients. It is the baseline for every other experiment. It is intended as the gate before -iterative R&D, but it is **not yet a gate**: the parity targets -are proposals, and no full run has been committed. See the -[exp_000 README][exp000] for what must happen first. +iterative R&D (i.e. results should be in parity with v2 results) + +> [!IMPORTANT] +> The baseline run has already been done and the results .git tracked. It does not need to be redone for each experiment. The below steps are intended for future repo maintainers an those who want to understand how `exp_000_parity_v2` works. +> ### Step 1: Check the settings @@ -374,9 +334,8 @@ same unless it is the question. For a step-by-step build of a real experiment, from scaffolding to write-up, see the worked examples: -[new covariates](example_experiment.md) (`exp_002_soilgrids`, lever -1) and [a different method](example_experiment_xgboost.md) -(`exp_001_xgboost`, lever 2). +[new covariates](example_experiment.md) (`exp_002_soilgrids`) and [a different method](example_experiment_xgboost.md) +(`exp_001_xgboost`). ### Scaffold an experiment @@ -410,14 +369,12 @@ Leave `id` in `run.R` as it is. Write the question and design in the experiment's `README.md` before you run anything. `run.R` loads the framework, calls `experiment_config()`, then -`run_experiment()`. Change one thing, using one of three levers, -from least to most invasive. +`run_experiment()`. ### 1. Different candidate formulas: `stage_models` The covariates a run loads are read off its formulas, so this is -also how you try new covariates. Keys are `stage` (every taxon in -the run) or `taxon.stage` (one taxon). +also how you try new covariates. ```r config <- experiment_config( @@ -441,7 +398,7 @@ config <- experiment_config( A covariate the dataset does not hold comes from the experiment. Write a script in the experiment's folder that saves a CSV to `2_pipeline//inputs/`, one row per `survey_unit_id`, and name -it in `covariate_files`. Never add columns to `0_data/` or change +it in `covariate_files`. Never add to `0_data/` or change `_setup/`: those hold the v2 data every experiment is compared against. [`exp_002_soilgrids`][exp002] is the worked example. @@ -479,14 +436,14 @@ example. Copy the matching template from `1_code/methods/_templates/` into the right folder of `1_code/methods/`, fill it in, and register it. Check an engine with `check_engine()`, confirm it appears in -`list_methods()`, then name it in a spec as in lever 2: +`list_methods()`, then name it in a spec: ```r check_engine("glm") # or check_engine(engine_mine()) list_methods("engine") ``` -The engine, selection, resampler, and metric contracts, and a +The engine, selection, resampler, and metrics, and a checklist, are in the [methods README][methods]. ### Run it and read the comparison @@ -667,8 +624,7 @@ Rscript 1_code/tests/compare_stores.R \ 2_pipeline/exp_000_parity_v2 2_pipeline/ 5 ``` -Every coefficient file should match to 1e-10. A change meant to -alter results should alter only what it says it does. More on both +Every coefficient file should match to 1e-10. More on both tools is in the [tests README][tests]. ## Working conventions @@ -691,22 +647,11 @@ tools is in the [tests README][tests]. result. - **Commits from `3_output/`:** commit only runs that count, every species at 100 draws, and check `run_record.md` says so. -- **Branching and pull requests:** - - > **TODO:** confirm with Brendan Casey. Neither this repository - > nor `code_standards` documents a branching or pull request - > workflow. ## Where to get help - **Repository and data access:** Brendan Casey, - brendan.casey@ualberta.ca (contact in the - [root README][readme-contact]). -- **Taxon-specific v2 questions:** - - > **TODO:** confirm with Brendan Casey who owns each taxon - > (bryophytes, lichens, soil mites, vascular plants, mammals, - > birds). + brendan.casey@ualberta.ca - **Design and contracts:** [`docs/framework_design.md`][design]. - **Every taxon-specific v2 behaviour:** From 6110b48ef8c1d2a694c61627c5d3cb59fdd02f39 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 07:08:42 -0600 Subject: [PATCH 16/19] Refactor example_experiment.md for clarity and conciseness --- docs/example_experiment.md | 15 ++++----------- 1 file changed, 4 insertions(+), 11 deletions(-) diff --git a/docs/example_experiment.md b/docs/example_experiment.md index 00adce8..131d461 100644 --- a/docs/example_experiment.md +++ b/docs/example_experiment.md @@ -5,10 +5,7 @@ This walkthrough builds an experiment from start to finish, using near-surface soil properties from SoilGrids 2.0 improve the models for the plant-group taxa and birds. -It is a good first example because it uses the most involved -lever: covariates the frozen dataset does not hold. An experiment -that only changes formulas skips Step 3; everything else is the -same. To change the engine or selection rule instead, see the + To change the engine or selection rule instead, see the [method-swap worked example](example_experiment_xgboost.md). Read [Getting started](getting_started.md) first. This page @@ -36,8 +33,7 @@ You need: in this example, the SoilGrids layer. - **exp_000 tables at the draw count you will run.** Every experiment is compared with - `3_output/exp_000_parity_v2/tables/`. Compare a 5-draw run with a - 5-draw exp_000, and a 100-draw run with a 100-draw exp_000. + `3_output/exp_000_parity_v2/tables/`. `run_experiment()` warns when the two differ. - **Any packages your covariate script needs.** Here, that is `sf`, `terra`, and @@ -127,8 +123,7 @@ exp_002's is this reason. Units the file does not list, or lists with `NA`, drop out of any -model that uses the column. That is how exp_002 handles mammals -(no coordinates) and twelve plant-group units just outside the +model that uses the column. That is how exp_002 handles mammals with no coordinates and twelve plant-group units just outside the 1 km grid. Report how many units that removes, as exp_002's README does, because those models fit on fewer units than exp_000. @@ -178,7 +173,7 @@ report. It also writes `soilgrids_0_5cm_source.csv`, recording the layer, DOI, depth, date, and method, so the inputs can be traced later. Do the same for your own covariates. -The script reads `SDM_SOILGRIDS`, if set, to use a local copy of +The script reads `SDM_SOILGRIDS`, adjust to use a local copy of the raster instead of the share. ## Step 4: Put the covariates in the formulas @@ -227,8 +222,6 @@ bird_soil[1] To build a candidate set from covariates alone instead, see `models_from_covariates()` in `1_code/harness/model_sets.R`. -Leave out terms that are fixed by others (silt here), so the -models are identifiable. ## Step 5: Configure the run From a293638efdeae32e901def1746d7b5d783c7c598 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 07:10:13 -0600 Subject: [PATCH 17/19] Refactor run.R for improved readability and update n_bootstraps to 100 --- 1_code/experiments/exp_001_xgboost/run.R | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/1_code/experiments/exp_001_xgboost/run.R b/1_code/experiments/exp_001_xgboost/run.R index c5c3bdb..19d82d6 100644 --- a/1_code/experiments/exp_001_xgboost/run.R +++ b/1_code/experiments/exp_001_xgboost/run.R @@ -29,17 +29,19 @@ load_framework() ## 1.2 The change: fit the habitat stage with xgboost ---- xgb_settings <- list( - nrounds = 1000, # the most rounds; early stopping picks - eta = 0.05, # learning rate - max_depth = 3, # tree complexity - subsample = 0.5, # share of rows each tree sees - min_child_weight = 1 # smallest leaf, in weighted rows + nrounds = 1000, # the most rounds; early stopping picks + eta = 0.05, # learning rate + max_depth = 3, # tree complexity + subsample = 0.5, # share of rows each tree sees + min_child_weight = 1 # smallest leaf, in weighted rows ) # One call per run: each spec names its own habitat stage specs <- lapply( - standard_specs(), replace_stage_method, - engine = "xgboost", control = xgb_settings + standard_specs(), + replace_stage_method, + engine = "xgboost", + control = xgb_settings ) ## 1.3 Configure the run ---- @@ -49,7 +51,7 @@ config <- experiment_config( taxa = names(specs), species = "parity_check", # 5 checks the pipeline runs; 100 for a result to read - n_bootstraps = 5, + n_bootstraps = 100, seed = 20260909, specs = specs, workers = 12 From a19b94c73ae212f6ec3e553ac17500f80c31a587 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Thu, 8 Oct 2026 07:27:30 -0600 Subject: [PATCH 18/19] Refactor example_experiment_xgboost.md for clarity and conciseness --- docs/example_experiment_xgboost.md | 40 ++++++------------------------ 1 file changed, 8 insertions(+), 32 deletions(-) diff --git a/docs/example_experiment_xgboost.md b/docs/example_experiment_xgboost.md index 389192e..1e3a0b2 100644 --- a/docs/example_experiment_xgboost.md +++ b/docs/example_experiment_xgboost.md @@ -9,8 +9,7 @@ mammals, and birds. It uses the `specs` lever: build the standard specs, change a stage, and pass the specs in. No new data is needed. For an experiment that adds covariates instead, see the -[SoilGrids worked example](example_experiment.md). Steps that are -the same in both point there rather than repeat. +[SoilGrids worked example](example_experiment.md). Read [Getting started](getting_started.md) first. Run every code block from the repository root. @@ -72,10 +71,6 @@ And the reasoning behind it: - **Why one formula.** A tree chooses its own variables, splits, and interactions. So it is given every candidate covariate once, as main effects, instead of v2's competing formulas. -- **Why mammals keep the hurdle.** The hurdle's structure - (presence on every deployment, then abundance where the species - was found) is a property of the data, not of the GLM. The trees - fit both halves. - **What is dropped, and why.** v2's post-processing of habitat coefficients: the plant stand-age splines, cutblock convergence, pAspen, and footprint pooling, and the mammal tables, @@ -113,8 +108,7 @@ Then v2 steps that read coefficients have to go too. `replace_stage_method()` makes all of those changes in one call. For a spec, it: -1. Finds the stage to change: the spec's `habitat_stage` unless - you pass `stage`. +1. Finds the stage to change: the spec's `habitat_stage`. 2. Replaces the candidate set with **one formula holding every covariate the v2 candidates use** (`union = TRUE`, the default). @@ -286,30 +280,14 @@ Two things are specific to a method without coefficients: prediction on the grid, in `grid_predictions.csv` and `grid_summary.csv`. - **`coefficients.csv` changes shape.** For plants and birds it - holds only the climate stage. For mammals, the hurdle writes its - per-habitat-type values there as three stages: - `habitat_presence`, `habitat_abundance`, and `habitat_total` - (their product). The mammal grid predictions are presence, as in - exp_000, so compare abundance and total through those rows. + holds only the climate stage. ## Step 8: Read the comparison The comparison table and its columns are described in [Step 8 of the SoilGrids example](example_experiment.md#step-8-read-the-comparison). -Changing the method adds four cautions. - -- **Read the out-of-bag metrics only.** A tree fits the units it - trained on far more closely than a GLM does, so in-sample - metrics flatter it. `comparison_metrics.csv` uses the `oob_` - metrics for this reason. -- **Read calibration with discrimination.** Untuned trees can - rank units well (higher AUC) while being overconfident - (calibration slope below 1). Report both. -- **The grid compares like with like only roughly.** Each grid row - is a pure stand of one habitat type at `Climate` 0. A GLM - extrapolates to that linearly; a tree holds the value of its - nearest split. Where a type is rare among the survey units, the - two can differ for that reason alone. +Keep in mind: + - **The baseline still has v2's post-processing**, and this run does not. Differences in aged, cutblock, or footprint habitat types partly reflect that. exp_000's mammal tables are v2's @@ -321,15 +299,13 @@ not a result. ## Step 9: Tune, run at 100 draws, and write it up -1. **Tune the settings** before judging the method, ideally per - taxon. The defaults' learning rate is higher than the usual - advice for boosted trees (see the engine's header). +1. **Tune the settings** before judging the method/ 2. Set `n_bootstraps = 100` and run again. Compare with a 100-draw exp_000 of the same species. 3. Fill in the README's **Result** and **Assumptions and caveats** sections. exp_001's caveats are a model: untuned - settings, the grid comparison, the post-processing the baseline - keeps, and what the mammal predictions are. + settings, the grid comparison, and the post-processing the baseline + keeps. 4. Commit only runs that count, as in [Step 9 of the SoilGrids example](example_experiment.md#step-9-run-at-100-draws-and-write-it-up). From 52567a18e46e7317f97193f6b7fc4cb039399640 Mon Sep 17 00:00:00 2001 From: bgcasey Date: Fri, 9 Oct 2026 16:47:16 -0600 Subject: [PATCH 19/19] Refactor code structure for improved readability and maintainability --- 3_output/exp_001_xgboost/run_record.md | 253 +++++ 3_output/exp_001_xgboost/tables/coverage.csv | 15 + .../exp_001_xgboost/tables/grid_summary.csv | 945 ++++++++++++++++++ .../exp_001_xgboost/tables/metric_summary.csv | 393 ++++++++ 4 files changed, 1606 insertions(+) create mode 100644 3_output/exp_001_xgboost/run_record.md create mode 100644 3_output/exp_001_xgboost/tables/coverage.csv create mode 100644 3_output/exp_001_xgboost/tables/grid_summary.csv create mode 100644 3_output/exp_001_xgboost/tables/metric_summary.csv diff --git a/3_output/exp_001_xgboost/run_record.md b/3_output/exp_001_xgboost/run_record.md new file mode 100644 index 0000000..37d6935 --- /dev/null +++ b/3_output/exp_001_xgboost/run_record.md @@ -0,0 +1,253 @@ +# Run record: exp_001_xgboost + +Written by `run_record()`. The result stores this describes are gitignored; this file is what remains. + +## Provenance + +_Volatile. Excluded from cross-run comparison._ + +- **git_commit**: a19b94c +- **pipeline_dir**: D:/local_projects/active/sdmMethodsDev/2_pipeline/exp_001_xgboost +- **r_version**: 4.5.0 +- **written_at**: 2026-10-08 13:51:37 + +## Configuration + +- **boot_seed**: 20260909.0000 +- **changes_from_v2**: bryophyte: habitat <- xgboost with `single`, on every covariate the v2 candidates use, lichen: habitat <- xgboost with `single`, on every covariate the v2 candidates use, mite: habitat <- xgboost with `single`, on every covariate the v2 candidates use, vascular_plant: habitat <- xgboost with `single`, on every covariate the v2 candidates use, mammal_summer: habitat <- xgboost with `single` inside `hurdle`, on every covariate the v2 candidates use, mammal_winter: habitat <- xgboost with `single` inside `hurdle`, on every covariate the v2 candidates use, bird: landcover <- xgboost with `single`, on every covariate the v2 candidates use +- **compared_with**: exp_000_parity_v2 +- **covariate_files**: none +- **data_dir**: published 2026-10-05 (//ABMI-DATA2/science/sdmMethodsDev/0_data/test_dataset/2026-10-05) +- **engines**: bayesglm, glm, xgboost +- **focal_species**: bird=AMRO, bird=YEWA, bryophyte=Bryum.All, bryophyte=Ceratodon.purpureus, lichen=Cladonia.chlorophaea, lichen=Physcia.adscendens, mammal=Coyote_Summer, mammal=Coyote_Winter, mammal=Moose_Summer, mammal=Moose_Winter, mite=Ceratozetes.gracilis, mite=Trhypochthonius.tectorum, vascular_plant=Galium.boreale, vascular_plant=Vicia.americana +- **jobs_not_ok**: 0 +- **jobs_ok**: 2800 +- **jobs_total**: 2800 +- **n_bootstraps**: 100 +- **plant_bootstrap**: spatial_block +- **selection**: aic_average, hurdle, single +- **species_n**: 14 +- **stage_models**: spec defaults (v2 candidate sets) +- **taxa**: bird, bryophyte, lichen, mammal_summer, mammal_winter, mite, vascular_plant +- **v2_bootstraps**: 100 + +## Coverage + +| taxon | region | species | draws | coefficient_rows | metric_rows | grid_rows | +| --- | --- | --- | --- | --- | --- | --- | +| bird | north | 2 | 100 | 2000 | 2800 | 17800 | +| bird | south | 2 | 100 | 2000 | 2800 | 3400 | +| bryophyte | north | 2 | 100 | 3800 | 2800 | 8600 | +| bryophyte | south | 2 | 100 | 3800 | 2800 | 3200 | +| lichen | north | 2 | 100 | 3800 | 2800 | 8600 | +| lichen | south | 2 | 100 | 3800 | 2800 | 3200 | +| mammal_summer | north | 2 | 100 | 27000 | 2800 | 9000 | +| mammal_summer | south | 2 | 100 | 12000 | 2800 | 4000 | +| mammal_winter | north | 2 | 100 | 27000 | 2800 | 9000 | +| mammal_winter | south | 2 | 100 | 12000 | 2800 | 4000 | +| mite | north | 2 | 100 | 3800 | 2800 | 8600 | +| mite | south | 2 | 100 | 3800 | 2800 | 3200 | +| vascular_plant | north | 2 | 100 | 3800 | 2800 | 8600 | +| vascular_plant | south | 2 | 100 | 3800 | 2800 | 3200 | + +## Metrics + +| taxon | region | metric | n | median | p10 | p90 | mean | sd | +| --- | --- | --- | --- | --- | --- | --- | --- | --- | +| bird | north | insample_auc | 200 | 0.7958 | 0.7636 | 0.8329 | 0.7982 | 0.0333 | +| bird | north | insample_calibration_slope | 200 | 1.0287 | 0.9421 | 1.1209 | 1.0317 | 0.0852 | +| bird | north | insample_deviance_explained | 200 | 0.2863 | 0.2197 | 0.3668 | 0.2927 | 0.0713 | +| bird | north | insample_n | 200 | 46751.0000 | 46746.9000 | 46756.1000 | 46751.0000 | 3.7804 | +| bird | north | insample_prevalence | 200 | 0.1847 | 0.1183 | 0.2520 | 0.1850 | 0.0662 | +| bird | north | insample_rmse | 200 | 0.5610 | 0.4868 | 0.6361 | 0.5617 | 0.0723 | +| bird | north | insample_spearman | 200 | 0.3846 | 0.3732 | 0.4097 | 0.3908 | 0.0162 | +| bird | north | oob_auc | 200 | 0.7696 | 0.7572 | 0.7839 | 0.7702 | 0.0125 | +| bird | north | oob_calibration_slope | 200 | 0.9774 | 0.8847 | 1.0659 | 0.9741 | 0.0795 | +| bird | north | oob_deviance_explained | 200 | 0.2333 | 0.2085 | 0.2651 | 0.2360 | 0.0267 | +| bird | north | oob_n | 200 | 124873.0000 | 124867.9000 | 124877.1000 | 124873.0000 | 3.7804 | +| bird | north | oob_prevalence | 200 | 0.1874 | 0.1341 | 0.2415 | 0.1877 | 0.0536 | +| bird | north | oob_rmse | 200 | 0.5918 | 0.5419 | 0.6398 | 0.5910 | 0.0478 | +| bird | north | oob_spearman | 200 | 0.3640 | 0.3360 | 0.3906 | 0.3637 | 0.0260 | +| bird | south | insample_auc | 200 | 0.7674 | 0.7599 | 0.7870 | 0.7727 | 0.0116 | +| bird | south | insample_calibration_slope | 200 | 1.0599 | 0.9572 | 1.2415 | 1.0943 | 0.1338 | +| bird | south | insample_deviance_explained | 200 | 0.2581 | 0.2012 | 0.3378 | 0.2681 | 0.0644 | +| bird | south | insample_n | 200 | 23760.0000 | 23758.0000 | 23763.0000 | 23760.3200 | 1.8205 | +| bird | south | insample_prevalence | 200 | 0.2148 | 0.1713 | 0.2592 | 0.2150 | 0.0428 | +| bird | south | insample_rmse | 200 | 0.6495 | 0.5778 | 0.7079 | 0.6436 | 0.0612 | +| bird | south | insample_spearman | 200 | 0.3881 | 0.3775 | 0.4056 | 0.3910 | 0.0124 | +| bird | south | oob_auc | 200 | 0.7431 | 0.7321 | 0.7606 | 0.7458 | 0.0127 | +| bird | south | oob_calibration_slope | 200 | 0.9770 | 0.8766 | 1.0879 | 0.9815 | 0.0908 | +| bird | south | oob_deviance_explained | 200 | 0.2112 | 0.1610 | 0.2656 | 0.2127 | 0.0502 | +| bird | south | oob_n | 200 | 67241.0000 | 67238.0000 | 67243.0000 | 67240.6800 | 1.8205 | +| bird | south | oob_prevalence | 200 | 0.2174 | 0.1750 | 0.2605 | 0.2177 | 0.0425 | +| bird | south | oob_rmse | 200 | 0.6668 | 0.6148 | 0.7159 | 0.6655 | 0.0491 | +| bird | south | oob_spearman | 200 | 0.3539 | 0.3455 | 0.3613 | 0.3539 | 0.0065 | +| bryophyte | north | insample_auc | 200 | 0.8683 | 0.8559 | 0.8812 | 0.8674 | 0.0153 | +| bryophyte | north | insample_calibration_slope | 200 | 1.3566 | 1.2953 | 1.4262 | 1.3594 | 0.0532 | +| bryophyte | north | insample_deviance_explained | 200 | 0.2994 | 0.2778 | 0.3385 | 0.3046 | 0.0299 | +| bryophyte | north | insample_n | 200 | 3069.0000 | 3035.0000 | 3101.0000 | 3086.6150 | 179.5128 | +| bryophyte | north | insample_prevalence | 200 | 0.4195 | 0.3957 | 0.4466 | 0.4205 | 0.0215 | +| bryophyte | north | insample_rmse | 200 | 0.3901 | 0.3812 | 0.3973 | 0.3905 | 0.0087 | +| bryophyte | north | insample_spearman | 200 | 0.6241 | 0.6040 | 0.6556 | 0.6277 | 0.0288 | +| bryophyte | north | oob_auc | 198 | 0.6800 | 0.6466 | 0.7181 | 0.6815 | 0.0290 | +| bryophyte | north | oob_calibration_slope | 198 | 0.7007 | 0.5948 | 0.8109 | 0.7052 | 0.0831 | +| bryophyte | north | oob_deviance_explained | 198 | 0.0498 | 0.0142 | 0.0987 | 0.0551 | 0.0316 | +| bryophyte | north | oob_n | 200 | 1783.0000 | 1751.0000 | 1817.0000 | 1765.3850 | 179.5128 | +| bryophyte | north | oob_prevalence | 198 | 0.4186 | 0.3933 | 0.4485 | 0.4206 | 0.0219 | +| bryophyte | north | oob_rmse | 198 | 0.4727 | 0.4617 | 0.4817 | 0.4723 | 0.0077 | +| bryophyte | north | oob_spearman | 198 | 0.3073 | 0.2492 | 0.3755 | 0.3104 | 0.0514 | +| bryophyte | south | insample_auc | 200 | 0.9144 | 0.8876 | 0.9415 | 0.9139 | 0.0214 | +| bryophyte | south | insample_calibration_slope | 200 | 1.2433 | 1.1911 | 1.2929 | 1.2431 | 0.0448 | +| bryophyte | south | insample_deviance_explained | 200 | 0.4184 | 0.3527 | 0.5001 | 0.4209 | 0.0564 | +| bryophyte | south | insample_n | 200 | 1461.5000 | 1440.9000 | 1484.0000 | 1469.9300 | 86.4473 | +| bryophyte | south | insample_prevalence | 200 | 0.3038 | 0.2345 | 0.3768 | 0.3050 | 0.0656 | +| bryophyte | south | insample_rmse | 200 | 0.3375 | 0.2902 | 0.3681 | 0.3296 | 0.0310 | +| bryophyte | south | insample_spearman | 200 | 0.6527 | 0.6142 | 0.6891 | 0.6508 | 0.0313 | +| bryophyte | south | oob_auc | 198 | 0.7418 | 0.7022 | 0.7845 | 0.7449 | 0.0320 | +| bryophyte | south | oob_calibration_slope | 198 | 0.7110 | 0.6316 | 0.8122 | 0.7190 | 0.0749 | +| bryophyte | south | oob_deviance_explained | 198 | 0.0965 | 0.0407 | 0.1563 | 0.0952 | 0.0438 | +| bryophyte | south | oob_n | 200 | 848.5000 | 826.0000 | 869.1000 | 840.0700 | 86.4473 | +| bryophyte | south | oob_prevalence | 198 | 0.3062 | 0.2295 | 0.3842 | 0.3056 | 0.0673 | +| bryophyte | south | oob_rmse | 198 | 0.4259 | 0.3873 | 0.4641 | 0.4260 | 0.0327 | +| bryophyte | south | oob_spearman | 198 | 0.3832 | 0.3382 | 0.4233 | 0.3831 | 0.0315 | +| lichen | north | insample_auc | 200 | 0.9130 | 0.9012 | 0.9430 | 0.9222 | 0.0196 | +| lichen | north | insample_calibration_slope | 200 | 1.1519 | 1.1119 | 1.2103 | 1.1580 | 0.0405 | +| lichen | north | insample_deviance_explained | 200 | 0.4242 | 0.3972 | 0.5389 | 0.4670 | 0.0660 | +| lichen | north | insample_n | 200 | 3674.5000 | 3639.0000 | 3709.0000 | 3695.5700 | 214.7712 | +| lichen | north | insample_prevalence | 200 | 0.3844 | 0.3787 | 0.3905 | 0.3847 | 0.0044 | +| lichen | north | insample_rmse | 200 | 0.3500 | 0.3033 | 0.3592 | 0.3319 | 0.0261 | +| lichen | north | insample_spearman | 200 | 0.6966 | 0.6767 | 0.7476 | 0.7115 | 0.0331 | +| lichen | north | oob_auc | 198 | 0.8290 | 0.7826 | 0.8702 | 0.8271 | 0.0396 | +| lichen | north | oob_calibration_slope | 198 | 0.9030 | 0.8380 | 0.9499 | 0.8968 | 0.0430 | +| lichen | north | oob_deviance_explained | 198 | 0.2629 | 0.1840 | 0.3415 | 0.2619 | 0.0691 | +| lichen | north | oob_n | 200 | 2136.5000 | 2102.0000 | 2172.0000 | 2115.4300 | 214.7712 | +| lichen | north | oob_prevalence | 198 | 0.3841 | 0.3745 | 0.3945 | 0.3839 | 0.0076 | +| lichen | north | oob_rmse | 198 | 0.4018 | 0.3726 | 0.4305 | 0.4019 | 0.0258 | +| lichen | north | oob_spearman | 198 | 0.5544 | 0.4750 | 0.6237 | 0.5510 | 0.0667 | +| lichen | south | insample_auc | 200 | 0.9712 | 0.9569 | 0.9803 | 0.9694 | 0.0105 | +| lichen | south | insample_calibration_slope | 200 | 1.1705 | 1.1245 | 1.2644 | 1.1844 | 0.0546 | +| lichen | south | insample_deviance_explained | 200 | 0.6081 | 0.5243 | 0.6704 | 0.6002 | 0.0626 | +| lichen | south | insample_n | 200 | 1482.5000 | 1459.0000 | 1509.0000 | 1491.0850 | 88.0622 | +| lichen | south | insample_prevalence | 200 | 0.1501 | 0.0887 | 0.2202 | 0.1537 | 0.0613 | +| lichen | south | insample_rmse | 200 | 0.2159 | 0.1883 | 0.2442 | 0.2172 | 0.0225 | +| lichen | south | insample_spearman | 200 | 0.5605 | 0.4577 | 0.6814 | 0.5698 | 0.1012 | +| lichen | south | oob_auc | 198 | 0.8647 | 0.8359 | 0.8858 | 0.8632 | 0.0207 | +| lichen | south | oob_calibration_slope | 198 | 0.8139 | 0.6209 | 0.9302 | 0.7852 | 0.1214 | +| lichen | south | oob_deviance_explained | 198 | 0.2584 | 0.1366 | 0.3479 | 0.2472 | 0.0857 | +| lichen | south | oob_n | 200 | 863.5000 | 837.0000 | 887.0000 | 854.9150 | 88.0622 | +| lichen | south | oob_prevalence | 198 | 0.1503 | 0.0880 | 0.2276 | 0.1554 | 0.0631 | +| lichen | south | oob_rmse | 198 | 0.3071 | 0.2667 | 0.3400 | 0.3026 | 0.0308 | +| lichen | south | oob_spearman | 198 | 0.4424 | 0.3345 | 0.5536 | 0.4450 | 0.0962 | +| mammal_summer | north | insample_auc | 200 | 0.8581 | 0.8016 | 0.9232 | 0.8625 | 0.0515 | +| mammal_summer | north | insample_calibration_slope | 200 | 1.1981 | 1.0736 | 1.3503 | 1.2003 | 0.1134 | +| mammal_summer | north | insample_deviance_explained | 200 | 0.3281 | 0.2188 | 0.5058 | 0.3563 | 0.1192 | +| mammal_summer | north | insample_n | 200 | 2563.5000 | 2538.0000 | 2587.0000 | 2577.0800 | 149.9873 | +| mammal_summer | north | insample_prevalence | 200 | 0.2733 | 0.2209 | 0.3269 | 0.2735 | 0.0486 | +| mammal_summer | north | insample_rmse | 200 | 0.3381 | 0.2718 | 0.3921 | 0.3329 | 0.0529 | +| mammal_summer | north | insample_spearman | 200 | 0.5427 | 0.4776 | 0.6083 | 0.5443 | 0.0550 | +| mammal_summer | north | oob_auc | 198 | 0.7320 | 0.6239 | 0.8311 | 0.7279 | 0.0939 | +| mammal_summer | north | oob_calibration_slope | 198 | 0.7328 | 0.5138 | 0.9043 | 0.7140 | 0.1560 | +| mammal_summer | north | oob_deviance_explained | 198 | 0.1175 | -0.0039 | 0.2809 | 0.1324 | 0.1232 | +| mammal_summer | north | oob_n | 200 | 1489.5000 | 1466.0000 | 1515.0000 | 1475.9200 | 149.9873 | +| mammal_summer | north | oob_prevalence | 198 | 0.2735 | 0.2193 | 0.3287 | 0.2728 | 0.0485 | +| mammal_summer | north | oob_rmse | 198 | 0.3881 | 0.3254 | 0.4475 | 0.3871 | 0.0567 | +| mammal_summer | north | oob_spearman | 198 | 0.3434 | 0.1906 | 0.4736 | 0.3326 | 0.1280 | +| mammal_summer | south | insample_auc | 200 | 0.9372 | 0.8497 | 0.9834 | 0.9236 | 0.0581 | +| mammal_summer | south | insample_calibration_slope | 200 | 1.3248 | 1.1967 | 1.4731 | 1.3418 | 0.1705 | +| mammal_summer | south | insample_deviance_explained | 200 | 0.4830 | 0.2127 | 0.7205 | 0.4694 | 0.2018 | +| mammal_summer | south | insample_n | 200 | 674.5000 | 662.0000 | 689.0000 | 678.4000 | 40.3178 | +| mammal_summer | south | insample_prevalence | 200 | 0.4333 | 0.1750 | 0.6993 | 0.4364 | 0.2552 | +| mammal_summer | south | insample_rmse | 200 | 0.2750 | 0.2031 | 0.3572 | 0.2821 | 0.0615 | +| mammal_summer | south | insample_spearman | 200 | 0.6063 | 0.4993 | 0.6518 | 0.5879 | 0.0693 | +| mammal_summer | south | oob_auc | 198 | 0.6964 | 0.5793 | 0.8222 | 0.7000 | 0.1072 | +| mammal_summer | south | oob_calibration_slope | 198 | 0.6194 | 0.2620 | 0.9144 | 0.5829 | 0.2462 | +| mammal_summer | south | oob_deviance_explained | 198 | 0.0110 | -0.1348 | 0.2337 | 0.0397 | 0.1496 | +| mammal_summer | south | oob_n | 200 | 390.5000 | 376.0000 | 403.0000 | 386.6000 | 40.3178 | +| mammal_summer | south | oob_prevalence | 198 | 0.4362 | 0.1686 | 0.7076 | 0.4370 | 0.2560 | +| mammal_summer | south | oob_rmse | 198 | 0.4024 | 0.3277 | 0.4540 | 0.3920 | 0.0549 | +| mammal_summer | south | oob_spearman | 198 | 0.2732 | 0.0934 | 0.4331 | 0.2647 | 0.1456 | +| mammal_winter | north | insample_auc | 200 | 0.9002 | 0.8548 | 0.9364 | 0.8983 | 0.0312 | +| mammal_winter | north | insample_calibration_slope | 200 | 1.1917 | 1.0741 | 1.3188 | 1.1931 | 0.0985 | +| mammal_winter | north | insample_deviance_explained | 200 | 0.4193 | 0.3160 | 0.5419 | 0.4265 | 0.0850 | +| mammal_winter | north | insample_n | 200 | 2609.5000 | 2585.0000 | 2640.1000 | 2626.3900 | 152.6091 | +| mammal_winter | north | insample_prevalence | 200 | 0.1764 | 0.1455 | 0.2061 | 0.1760 | 0.0269 | +| mammal_winter | north | insample_rmse | 200 | 0.2731 | 0.2476 | 0.2941 | 0.2715 | 0.0170 | +| mammal_winter | north | insample_spearman | 200 | 0.5120 | 0.4346 | 0.6058 | 0.5227 | 0.0662 | +| mammal_winter | north | oob_auc | 198 | 0.7752 | 0.6821 | 0.8527 | 0.7692 | 0.0752 | +| mammal_winter | north | oob_calibration_slope | 198 | 0.7656 | 0.5352 | 0.9157 | 0.7370 | 0.1418 | +| mammal_winter | north | oob_deviance_explained | 198 | 0.1574 | 0.0360 | 0.3124 | 0.1707 | 0.1157 | +| mammal_winter | north | oob_n | 200 | 1517.5000 | 1486.9000 | 1542.0000 | 1500.6100 | 152.6091 | +| mammal_winter | north | oob_prevalence | 198 | 0.1742 | 0.1426 | 0.2060 | 0.1734 | 0.0271 | +| mammal_winter | north | oob_rmse | 198 | 0.3196 | 0.2964 | 0.3391 | 0.3189 | 0.0167 | +| mammal_winter | north | oob_spearman | 198 | 0.3637 | 0.2263 | 0.4812 | 0.3550 | 0.1141 | +| mammal_winter | south | insample_auc | 200 | 0.9264 | 0.8584 | 0.9852 | 0.9277 | 0.0461 | +| mammal_winter | south | insample_calibration_slope | 200 | 1.2845 | 1.1743 | 1.4493 | 1.3122 | 0.1691 | +| mammal_winter | south | insample_deviance_explained | 200 | 0.4432 | 0.2834 | 0.7411 | 0.4947 | 0.1691 | +| mammal_winter | south | insample_n | 200 | 695.0000 | 682.0000 | 709.0000 | 699.1600 | 41.4843 | +| mammal_winter | south | insample_prevalence | 200 | 0.3351 | 0.0822 | 0.6144 | 0.3449 | 0.2590 | +| mammal_winter | south | insample_rmse | 200 | 0.2440 | 0.1354 | 0.3408 | 0.2378 | 0.0826 | +| mammal_winter | south | insample_spearman | 200 | 0.5022 | 0.4257 | 0.7170 | 0.5554 | 0.1160 | +| mammal_winter | south | oob_auc | 198 | 0.7337 | 0.6532 | 0.8294 | 0.7352 | 0.0705 | +| mammal_winter | south | oob_calibration_slope | 198 | 0.5300 | 0.3979 | 0.7960 | 0.5699 | 0.1857 | +| mammal_winter | south | oob_deviance_explained | 198 | 0.0265 | -0.1157 | 0.1905 | 0.0299 | 0.1202 | +| mammal_winter | south | oob_n | 200 | 403.0000 | 389.0000 | 416.0000 | 398.8400 | 41.4843 | +| mammal_winter | south | oob_prevalence | 198 | 0.3423 | 0.0803 | 0.6235 | 0.3480 | 0.2608 | +| mammal_winter | south | oob_rmse | 198 | 0.3335 | 0.2224 | 0.4321 | 0.3301 | 0.0948 | +| mammal_winter | south | oob_spearman | 198 | 0.2794 | 0.2280 | 0.3279 | 0.2804 | 0.0381 | +| mite | north | insample_auc | 200 | 0.8908 | 0.8388 | 0.9127 | 0.8824 | 0.0336 | +| mite | north | insample_calibration_slope | 200 | 1.2278 | 1.1697 | 1.4382 | 1.2864 | 0.1128 | +| mite | north | insample_deviance_explained | 200 | 0.3219 | 0.2244 | 0.4135 | 0.3281 | 0.0801 | +| mite | north | insample_n | 200 | 3611.0000 | 3575.8000 | 3648.1000 | 3631.9500 | 211.3664 | +| mite | north | insample_prevalence | 200 | 0.1491 | 0.0931 | 0.2122 | 0.1518 | 0.0567 | +| mite | north | insample_rmse | 200 | 0.2929 | 0.2516 | 0.3117 | 0.2838 | 0.0257 | +| mite | north | insample_spearman | 200 | 0.4590 | 0.3441 | 0.5817 | 0.4682 | 0.1073 | +| mite | north | oob_auc | 198 | 0.7426 | 0.6494 | 0.8156 | 0.7357 | 0.0721 | +| mite | north | oob_calibration_slope | 198 | 0.7788 | 0.5045 | 0.9033 | 0.7287 | 0.1586 | +| mite | north | oob_deviance_explained | 198 | 0.1001 | -0.0038 | 0.2095 | 0.1031 | 0.0918 | +| mite | north | oob_n | 200 | 2100.0000 | 2062.9000 | 2135.2000 | 2079.0500 | 211.3664 | +| mite | north | oob_prevalence | 198 | 0.1509 | 0.0922 | 0.2141 | 0.1524 | 0.0568 | +| mite | north | oob_rmse | 198 | 0.3273 | 0.2868 | 0.3655 | 0.3267 | 0.0351 | +| mite | north | oob_spearman | 198 | 0.3038 | 0.1536 | 0.4454 | 0.2998 | 0.1326 | +| mite | south | insample_auc | 200 | 0.9674 | 0.9280 | 0.9911 | 0.9636 | 0.0277 | +| mite | south | insample_calibration_slope | 200 | 1.2165 | 1.1203 | 1.3296 | 1.2269 | 0.0958 | +| mite | south | insample_deviance_explained | 200 | 0.5554 | 0.3978 | 0.7458 | 0.5731 | 0.1376 | +| mite | south | insample_n | 200 | 1492.5000 | 1471.0000 | 1516.1000 | 1501.9250 | 88.5699 | +| mite | south | insample_prevalence | 200 | 0.0681 | 0.0529 | 0.0865 | 0.0696 | 0.0144 | +| mite | south | insample_rmse | 200 | 0.1826 | 0.1223 | 0.2226 | 0.1735 | 0.0421 | +| mite | south | insample_spearman | 200 | 0.3997 | 0.3735 | 0.4403 | 0.4044 | 0.0272 | +| mite | south | oob_auc | 198 | 0.8169 | 0.7260 | 0.9202 | 0.8244 | 0.0813 | +| mite | south | oob_calibration_slope | 198 | 0.7516 | 0.5094 | 1.0019 | 0.7545 | 0.1928 | +| mite | south | oob_deviance_explained | 198 | 0.1527 | 0.0051 | 0.3972 | 0.1903 | 0.1555 | +| mite | south | oob_n | 200 | 870.5000 | 846.9000 | 892.0000 | 861.0750 | 88.5699 | +| mite | south | oob_prevalence | 198 | 0.0680 | 0.0520 | 0.0901 | 0.0702 | 0.0148 | +| mite | south | oob_rmse | 198 | 0.2237 | 0.1833 | 0.2785 | 0.2313 | 0.0408 | +| mite | south | oob_spearman | 198 | 0.2777 | 0.2173 | 0.3399 | 0.2792 | 0.0493 | +| vascular_plant | north | insample_auc | 200 | 0.9388 | 0.9354 | 0.9423 | 0.9387 | 0.0028 | +| vascular_plant | north | insample_calibration_slope | 200 | 1.1336 | 1.1237 | 1.1458 | 1.1341 | 0.0084 | +| vascular_plant | north | insample_deviance_explained | 200 | 0.5207 | 0.5082 | 0.5339 | 0.5207 | 0.0102 | +| vascular_plant | north | insample_n | 200 | 4350.0000 | 4321.9000 | 4383.0000 | 4375.3700 | 253.0075 | +| vascular_plant | north | insample_prevalence | 200 | 0.3962 | 0.3735 | 0.4214 | 0.3976 | 0.0206 | +| vascular_plant | north | insample_rmse | 200 | 0.3118 | 0.3066 | 0.3157 | 0.3117 | 0.0036 | +| vascular_plant | north | insample_spearman | 200 | 0.7424 | 0.7316 | 0.7549 | 0.7432 | 0.0091 | +| vascular_plant | north | oob_auc | 198 | 0.8721 | 0.8634 | 0.8805 | 0.8721 | 0.0068 | +| vascular_plant | north | oob_calibration_slope | 198 | 0.9594 | 0.9266 | 0.9918 | 0.9598 | 0.0258 | +| vascular_plant | north | oob_deviance_explained | 198 | 0.3469 | 0.3252 | 0.3683 | 0.3462 | 0.0179 | +| vascular_plant | north | oob_n | 200 | 2524.0000 | 2491.0000 | 2552.1000 | 2498.6300 | 253.0075 | +| vascular_plant | north | oob_prevalence | 198 | 0.3937 | 0.3713 | 0.4251 | 0.3985 | 0.0225 | +| vascular_plant | north | oob_rmse | 198 | 0.3745 | 0.3673 | 0.3815 | 0.3744 | 0.0057 | +| vascular_plant | north | oob_spearman | 198 | 0.6297 | 0.6140 | 0.6474 | 0.6304 | 0.0132 | +| vascular_plant | south | insample_auc | 200 | 0.9759 | 0.9630 | 0.9890 | 0.9763 | 0.0106 | +| vascular_plant | south | insample_calibration_slope | 200 | 1.1009 | 1.0691 | 1.1473 | 1.1069 | 0.0316 | +| vascular_plant | south | insample_deviance_explained | 200 | 0.6700 | 0.6049 | 0.7701 | 0.6839 | 0.0657 | +| vascular_plant | south | insample_n | 200 | 1674.0000 | 1652.0000 | 1698.1000 | 1683.8950 | 98.6476 | +| vascular_plant | south | insample_prevalence | 200 | 0.2431 | 0.2173 | 0.2692 | 0.2430 | 0.0219 | +| vascular_plant | south | insample_rmse | 200 | 0.2267 | 0.1864 | 0.2570 | 0.2235 | 0.0285 | +| vascular_plant | south | insample_spearman | 200 | 0.7064 | 0.6905 | 0.7226 | 0.7060 | 0.0122 | +| vascular_plant | south | oob_auc | 198 | 0.9063 | 0.8665 | 0.9427 | 0.9061 | 0.0313 | +| vascular_plant | south | oob_calibration_slope | 198 | 0.9211 | 0.8591 | 0.9652 | 0.9174 | 0.0422 | +| vascular_plant | south | oob_deviance_explained | 198 | 0.4039 | 0.3138 | 0.5322 | 0.4185 | 0.0869 | +| vascular_plant | south | oob_n | 200 | 974.0000 | 949.9000 | 996.0000 | 964.1050 | 98.6476 | +| vascular_plant | south | oob_prevalence | 198 | 0.2453 | 0.2136 | 0.2763 | 0.2436 | 0.0247 | +| vascular_plant | south | oob_rmse | 198 | 0.3083 | 0.2698 | 0.3486 | 0.3099 | 0.0323 | +| vascular_plant | south | oob_spearman | 198 | 0.6019 | 0.5614 | 0.6427 | 0.6012 | 0.0313 | + diff --git a/3_output/exp_001_xgboost/tables/coverage.csv b/3_output/exp_001_xgboost/tables/coverage.csv new file mode 100644 index 0000000..731ad75 --- /dev/null +++ b/3_output/exp_001_xgboost/tables/coverage.csv @@ -0,0 +1,15 @@ +taxon,run,region,season,part,species,draws,stages,has_coefficients,has_grid +bird,bird,north,,,2,100,climate,TRUE,TRUE +bird,bird,south,,,2,100,climate,TRUE,TRUE +bryophyte,bryophyte,north,,,2,100,climate,TRUE,TRUE +bryophyte,bryophyte,south,,,2,100,climate,TRUE,TRUE +lichen,lichen,north,,,2,100,climate,TRUE,TRUE +lichen,lichen,south,,,2,100,climate,TRUE,TRUE +mammal,mammal_summer,north,summer,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_summer,south,summer,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_winter,north,winter,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mammal,mammal_winter,south,winter,hurdle,2,100,"habitat_presence, habitat_abundance, habitat_total",TRUE,TRUE +mite,mite,north,,,2,100,climate,TRUE,TRUE +mite,mite,south,,,2,100,climate,TRUE,TRUE +vascular_plant,vascular_plant,north,,,2,100,climate,TRUE,TRUE +vascular_plant,vascular_plant,south,,,2,100,climate,TRUE,TRUE diff --git a/3_output/exp_001_xgboost/tables/grid_summary.csv b/3_output/exp_001_xgboost/tables/grid_summary.csv new file mode 100644 index 0000000..1cd8ac0 --- /dev/null +++ b/3_output/exp_001_xgboost/tables/grid_summary.csv @@ -0,0 +1,945 @@ +taxon,run,region,season,part,species,grid_unit,n,median,p10,p90,boot1,mean,sd +bird,bird,north,,,AMRO,SpruceR,100,0.0486825132162613,0.0370991305473186,0.0645572547237092,0.0366555040643697,0.0497685596169798,0.0108179877827162 +bird,bird,north,,,AMRO,Spruce1,100,0.0448373631778169,0.0364071215626922,0.0584525226951336,0.0316824231384449,0.0461057330198926,0.00865207548910837 +bird,bird,north,,,AMRO,Spruce2,100,0.0274924391968244,0.0221325110858396,0.0328263933683176,0.0192954402592803,0.0274880154583115,0.00438063216308379 +bird,bird,north,,,AMRO,Spruce3,100,0.0296518571364151,0.023073587866791,0.0366697425516028,0.0224877396498874,0.0299047269142132,0.00515589199809039 +bird,bird,north,,,AMRO,Spruce4,100,0.0312816994207018,0.0240045696626238,0.0385165886604366,0.0232956844547479,0.0313842851693218,0.00531708317253386 +bird,bird,north,,,AMRO,Spruce5,100,0.0292942167001203,0.0230315671011887,0.0351049154846675,0.0237136213353724,0.0292536449399259,0.00466043567283847 +bird,bird,north,,,AMRO,Spruce6,100,0.0283603865226403,0.0230057205419347,0.0338697460503524,0.0242932970642781,0.0282556287171132,0.00434954450068858 +bird,bird,north,,,AMRO,Spruce7,100,0.0392128988492738,0.0335055834600202,0.0482865989297235,0.0355022119350248,0.0397688679791815,0.00633478362644171 +bird,bird,north,,,AMRO,Spruce8,100,0.0308254782553348,0.0244772679765592,0.0388577761348628,0.0342038606878076,0.0310054765857552,0.00591324600938734 +bird,bird,north,,,AMRO,PineR,100,0.0585143422025382,0.0408323115365873,0.0751233492533014,0.0530403796885895,0.0586947506241557,0.0139629540367074 +bird,bird,north,,,AMRO,Pine1,100,0.0537609302641739,0.0415415816794073,0.0670394992949089,0.0415420204206911,0.0539290052182967,0.0105752436118672 +bird,bird,north,,,AMRO,Pine2,100,0.0299496749048258,0.0240125760009003,0.0368201829612891,0.022846537656256,0.0304269841739099,0.00502457064824189 +bird,bird,north,,,AMRO,Pine3,100,0.0321171894408046,0.0255535161674233,0.0408473497653982,0.0263660193170897,0.0330178761523606,0.00577144811120697 +bird,bird,north,,,AMRO,Pine4,100,0.0341685719736364,0.0262264568205361,0.042222372981872,0.0265862768154634,0.0343813547341312,0.00597028082889138 +bird,bird,north,,,AMRO,Pine5,100,0.032182679803467,0.0253974345008909,0.0394094416035304,0.0270632486606675,0.0323472223165111,0.00528560065474526 +bird,bird,north,,,AMRO,Pine6,100,0.0314661766593534,0.0252248126952265,0.0375296879019713,0.0280985457002906,0.031635504765749,0.00500297100735922 +bird,bird,north,,,AMRO,Pine7,100,0.0442355678039057,0.0367267463766085,0.0554834640850425,0.0410632003502132,0.0449175894643263,0.00733560468690754 +bird,bird,north,,,AMRO,Pine8,100,0.0345902827783292,0.0266315178601411,0.0417528042907137,0.0379560705308812,0.0344218130480786,0.00630705655680231 +bird,bird,north,,,AMRO,DecidR,100,0.0517289099451982,0.0393880659985639,0.0689889161181536,0.0440088010747368,0.0534984615566758,0.0116021257465109 +bird,bird,north,,,AMRO,Decid1,100,0.0451651619321736,0.035720750453288,0.0598620662414224,0.0342898880426625,0.046585852465249,0.00916490861702694 +bird,bird,north,,,AMRO,Decid2,100,0.0288920520609668,0.0231222974196969,0.0364076480584066,0.0218827520102022,0.0292547295409748,0.00482083622657671 +bird,bird,north,,,AMRO,Decid3,100,0.0314721548984448,0.0250031080651603,0.040141968668138,0.0255902028483798,0.0321328186384238,0.00554078295477911 +bird,bird,north,,,AMRO,Decid4,100,0.0331883005619539,0.0266146116667703,0.0422989897405284,0.0267508604288086,0.0338139327013079,0.00579377226669147 +bird,bird,north,,,AMRO,Decid5,100,0.0316244390320805,0.0254297756739699,0.0393588215557503,0.0261273274602881,0.0319399692548794,0.00518399820408912 +bird,bird,north,,,AMRO,Decid6,100,0.0314283923056845,0.0251083294607748,0.0377695076814546,0.027182012927931,0.0312690610796706,0.00493929539634584 +bird,bird,north,,,AMRO,Decid7,100,0.0433634641284871,0.0372386809021768,0.0550765133830384,0.039822133423833,0.0447083481206136,0.00694063535390359 +bird,bird,north,,,AMRO,Decid8,100,0.033434216451712,0.0272055212672694,0.0416357236886695,0.0367415739731917,0.0341425642777791,0.00603084337707206 +bird,bird,north,,,AMRO,MixedwoodR,100,0.0522227881261434,0.0416413621862021,0.0687473038691492,0.0470223955153463,0.0539036154852127,0.0113461944116044 +bird,bird,north,,,AMRO,Mixedwood1,100,0.0489321822306961,0.0394316737699364,0.0633315064685014,0.038630648450565,0.0505961227167335,0.00960479207613265 +bird,bird,north,,,AMRO,Mixedwood2,100,0.0316937116070962,0.0255085313081511,0.0384609583932771,0.0245900453148193,0.0316648390990046,0.00513852153398382 +bird,bird,north,,,AMRO,Mixedwood3,100,0.0336725713751219,0.0284629460182436,0.0415725548843036,0.0280920013291388,0.0346404283028082,0.00603734252229571 +bird,bird,north,,,AMRO,Mixedwood4,100,0.0360016508997165,0.02923573245437,0.0446939723914911,0.0293661293415373,0.0365106468427509,0.00644049921243966 +bird,bird,north,,,AMRO,Mixedwood5,100,0.0346898668270629,0.0283176307325359,0.0425101064182802,0.0296974295468082,0.035221544357308,0.00591451984875465 +bird,bird,north,,,AMRO,Mixedwood6,100,0.0341981345696264,0.0277469871730276,0.0415628198482282,0.0286928542458694,0.0340332886659669,0.00535976292785047 +bird,bird,north,,,AMRO,Mixedwood7,100,0.0463436654532324,0.0387275579330558,0.0566060411961871,0.0412524789933992,0.0468035380533434,0.00801123672468597 +bird,bird,north,,,AMRO,Mixedwood8,100,0.034961352185222,0.0265714125655435,0.0446463673433826,0.0374699974200187,0.0354454046004155,0.00685610330063066 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+bryophyte,bryophyte,north,,,Bryum.All,BlackSpruce,100,0.132529793881034,0.0606254864622001,0.29270609876469,0.139795052022587,0.155398755350307,0.0971831725143639 +bryophyte,bryophyte,north,,,Bryum.All,TreedFen,100,0.274225662237749,0.154571804705264,0.508619070587643,0.207464791255052,0.31500203998609,0.14979688276438 +bryophyte,bryophyte,north,,,Bryum.All,TreedSwamp,100,0.805043329635818,0.573574706347546,0.921714014435063,0.67700829253431,0.769875130457718,0.149822241152767 +bryophyte,bryophyte,north,,,Bryum.All,GraminoidFen,100,0.243142932883928,0.102271942841221,0.520912299556065,0.156682738198137,0.280882916700048,0.16220349251931 +bryophyte,bryophyte,north,,,Bryum.All,ShrubbyFen,100,0.277428924191724,0.0830129933659652,0.530277484239389,0.17636896116634,0.305216942144618,0.169707244314788 +bryophyte,bryophyte,north,,,Bryum.All,ShrubbyBog,100,0.034747925900528,0.017492283174746,0.0832866509939492,0.093958166878054,0.0442082221240004,0.0361523480804753 +bryophyte,bryophyte,north,,,Bryum.All,ShrubbySwamp,100,0.665667319864741,0.389265367048815,0.846234143496576,0.568041308422661,0.639647052653811,0.170603818028192 +bryophyte,bryophyte,north,,,Bryum.All,Marsh,100,0.33499562820057,0.142456549323339,0.611321575485798,0.265932364478495,0.354871557315912,0.172789133643131 +bryophyte,bryophyte,north,,,Bryum.All,Shrub,100,0.754297292533816,0.512115420599542,0.87213519722401,0.597088876880074,0.721024850136691,0.148936331605974 +bryophyte,bryophyte,north,,,Bryum.All,Grass,100,0.7598247852352,0.480903439708829,0.896974575119141,0.603492417714662,0.709911684351789,0.170315707647569 +bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruceR,100,0.415854211449628,0.216812835463842,0.761173208116085,0.30250437064146,0.44568176967693,0.200419683076287 +bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce1,100,0.374518760604149,0.191238138161581,0.741820115551431,0.278377962303985,0.420962432214942,0.213247702615347 +bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce2,100,0.60763472983754,0.34278854443818,0.873730558700593,0.536296256580977,0.617734193198919,0.200997413449349 +bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce3,100,0.60763472983754,0.34278854443818,0.873730558700593,0.536296256580977,0.617734193198919,0.200997413449349 +bryophyte,bryophyte,north,,,Bryum.All,CCWhiteSpruce4,100,0.60763472983754,0.34278854443818,0.873730558700593,0.536296256580977,0.617734193198919,0.200997413449349 +bryophyte,bryophyte,north,,,Bryum.All,CCPineR,100,0.299217496015938,0.146721581689098,0.625472923779859,0.269948790634583,0.348787062220834,0.193994036831013 +bryophyte,bryophyte,north,,,Bryum.All,CCPine1,100,0.317210210178321,0.161811083630419,0.63446980801941,0.243336158729855,0.372090662250338,0.193111664753116 +bryophyte,bryophyte,north,,,Bryum.All,CCPine2,100,0.188270981982252,0.0975960414881366,0.491432699255116,0.177776992554065,0.24757533185121,0.167423687703598 +bryophyte,bryophyte,north,,,Bryum.All,CCPine3,100,0.188270981982252,0.0975960414881366,0.491432699255116,0.177776992554065,0.24757533185121,0.167423687703598 +bryophyte,bryophyte,north,,,Bryum.All,CCPine4,100,0.188270981982252,0.0975960414881366,0.491432699255116,0.177776992554065,0.24757533185121,0.167423687703598 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduousR,100,0.413395104359892,0.207913581828308,0.696385650077804,0.317023552189929,0.436144835189401,0.18781359704894 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous1,100,0.603885270101413,0.338179800503464,0.827524656923571,0.395089825659678,0.606664174652632,0.173914613339182 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous2,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous3,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,CCDeciduous4,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwoodR,100,0.413395104359892,0.207913581828308,0.696385650077804,0.317023552189929,0.436144835189401,0.18781359704894 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood1,100,0.603885270101413,0.338179800503464,0.827524656923571,0.395089825659678,0.606664174652632,0.173914613339182 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood2,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood3,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,CCMixedwood4,100,0.245300678658041,0.0919917091717991,0.595336271467122,0.226184197371291,0.293505159019832,0.183001743949182 +bryophyte,bryophyte,north,,,Bryum.All,EnSeismic,100,0.30693813082011,0.130335014535785,0.636538505750014,0.38979785120101,0.357782814150285,0.201770755568846 +bryophyte,bryophyte,north,,,Bryum.All,EnSoftLin,100,0.588147689751398,0.318855049378106,0.815883865929065,0.486461633900538,0.579965994622425,0.179599909796135 +bryophyte,bryophyte,north,,,Bryum.All,TrSoftLin,100,0.518351024008568,0.241782510563913,0.778108938701651,0.47227081010632,0.517114783968205,0.203194066723245 +bryophyte,bryophyte,north,,,Bryum.All,HardLin,100,0.674135175297982,0.361842472168928,0.880462868698887,0.460642471347814,0.632637355485063,0.194074074797338 +bryophyte,bryophyte,north,,,Bryum.All,UrbInd,100,0.634449672500024,0.409127880106645,0.87992645248752,0.511165376404773,0.63345579793516,0.188338633945222 +bryophyte,bryophyte,north,,,Bryum.All,Wellsites,100,0.359352700874289,0.155577273565129,0.778311639108879,0.273190415567555,0.409611015903684,0.221313319516919 +bryophyte,bryophyte,north,,,Bryum.All,Crop,100,0.358910199088046,0.185302120552012,0.659442406677581,0.257936328703817,0.383920523075714,0.174267222779305 +bryophyte,bryophyte,north,,,Bryum.All,TameP,100,0.604628120771451,0.309507296817652,0.830482540959428,0.456666447201498,0.580727219416195,0.193513312945083 +bryophyte,bryophyte,north,,,Bryum.All,RoughP,100,0.794203712541373,0.590321435437605,0.920412250510159,0.594183706159022,0.777429728897675,0.127619147374078 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,WhiteSpruce,100,0.142315586607942,0.0686468771921104,0.275284582483869,0.222596977385881,0.164531544909598,0.0813369347411946 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Pine,100,0.235095647259374,0.0704652505804335,0.474152977105273,0.249304854609913,0.255187949846291,0.150371828345669 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Deciduous,100,0.223550148093267,0.108773919665525,0.445735200899961,0.263472446516492,0.24723174699021,0.117550351487923 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Mixedwood,100,0.351686204178333,0.149184510433459,0.522715648863298,0.28984867231307,0.339892502710069,0.135549066166901 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,BlackSpruce,100,0.220937222335205,0.107481175777584,0.394287918973291,0.184070478469377,0.244108512463585,0.120390964315167 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedFen,100,0.203006738018494,0.0795582987064292,0.342565874530262,0.203630483476431,0.212914905109193,0.124116904837576 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TreedSwamp,100,0.195188337803323,0.0682275786216017,0.420409847511141,0.19978407964156,0.222466816956415,0.146088017569311 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,GraminoidFen,100,0.216092730334117,0.0904523421731725,0.432032018548788,0.250130284855286,0.243046239167865,0.140515163987517 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyFen,100,0.127667997452492,0.0493188550668043,0.335638666137942,0.184174254034198,0.16814747987864,0.126559274050713 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbyBog,100,0.118642699298903,0.0462578056008689,0.347972925325952,0.146502960363555,0.161909722014071,0.131768168303555 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,ShrubbySwamp,100,0.101355718875149,0.0403695762010787,0.252308905115742,0.177195862366848,0.128681741742036,0.0946758620941035 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Marsh,100,0.06081814279898,0.027686915822818,0.157170855293689,0.141556993449759,0.0789568766436559,0.0608297643512145 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Shrub,100,0.269594747135902,0.128484620634217,0.474028847439102,0.335467673199442,0.296082556151396,0.140124035087027 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Grass,100,0.254404263354605,0.100055480068182,0.450274606178041,0.301992031448182,0.270972688699342,0.135721734705616 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruceR,100,0.595603793313951,0.33164420232901,0.792472354511204,0.614344233250936,0.580485910802627,0.177348353694793 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce1,100,0.4234997017577,0.223875359643336,0.60581860568771,0.393484602837274,0.412248860230244,0.15787084471157 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce2,100,0.655201677740614,0.457450413930352,0.815230472930563,0.657916313589466,0.639284310250562,0.160563940175889 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce3,100,0.655201677740614,0.457450413930352,0.815230472930563,0.657916313589466,0.639284310250562,0.160563940175889 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCWhiteSpruce4,100,0.655201677740614,0.457450413930352,0.815230472930563,0.657916313589466,0.639284310250562,0.160563940175889 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPineR,100,0.413438517582914,0.195449933514532,0.660930471513713,0.545659517771766,0.417120432020749,0.171222175512618 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine1,100,0.738645388667175,0.517260811784742,0.867768752340192,0.642056258107979,0.711196441468318,0.141079933190796 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine2,100,0.588664263778226,0.34014369956655,0.842076799451668,0.635584579586204,0.587859862519958,0.1888298716933 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine3,100,0.588664263778226,0.34014369956655,0.842076799451668,0.635584579586204,0.587859862519958,0.1888298716933 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCPine4,100,0.588664263778226,0.34014369956655,0.842076799451668,0.635584579586204,0.587859862519958,0.1888298716933 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduousR,100,0.446510057191362,0.226689532115162,0.704455570781972,0.519526869750587,0.471089708445644,0.188879647079468 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous1,100,0.650754708209238,0.442696052965581,0.818769850176762,0.558717718351746,0.626855186864007,0.162163560887394 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous2,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous3,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCDeciduous4,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwoodR,100,0.446510057191362,0.226689532115162,0.704455570781972,0.519526869750587,0.471089708445644,0.188879647079468 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood1,100,0.650754708209238,0.442696052965581,0.818769850176762,0.558717718351746,0.626855186864007,0.162163560887394 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood2,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood3,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,CCMixedwood4,100,0.462936410202938,0.196136426299237,0.656258034574238,0.462378918324272,0.445796808055427,0.174209341801878 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSeismic,100,0.465663673479024,0.25833198305871,0.66735340128708,0.396042503380286,0.459230362641006,0.167293406872117 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,EnSoftLin,100,0.149960661724928,0.0555606462888647,0.316507590078192,0.247714104517573,0.169466926072089,0.112282750258774 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TrSoftLin,100,0.124124063213628,0.0586004595112313,0.255220230311334,0.228401728876471,0.146059567091728,0.0914544008988397 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,HardLin,100,0.14894876475957,0.0588583769779084,0.350349676272219,0.179441300697741,0.176221559538252,0.113287646242997 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,UrbInd,100,0.380599988232591,0.194282179771886,0.643636056196141,0.23766538272575,0.398532749962051,0.176700746354995 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Wellsites,100,0.326366174441688,0.118572560475906,0.588099658227696,0.260455149462922,0.355797257799987,0.190623036310391 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,Crop,100,0.149369687107567,0.0624549102226828,0.30470656034829,0.140345468378213,0.164069170205362,0.0924427223413 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,TameP,100,0.214168723172328,0.0823543971675099,0.432328603513911,0.218587144767863,0.234906469897339,0.144826680010779 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,RoughP,100,0.23023772945341,0.0928249529441701,0.416685582209461,0.270343789916824,0.241643684323598,0.135529879505067 +bryophyte,bryophyte,south,,,Bryum.All,Loamy,100,0.478737569000932,0.198848328340242,0.758599390846082,0.473274717845967,0.475565323627685,0.209763429267702 +bryophyte,bryophyte,south,,,Bryum.All,SandyLoam,100,0.688472744088449,0.31937169840174,0.873715344245411,0.623763404348959,0.632362386400315,0.213174307393273 +bryophyte,bryophyte,south,,,Bryum.All,ClaySub,100,0.492640853290638,0.155126513690152,0.796802442738155,0.513566279666649,0.491834314853917,0.246277215679973 +bryophyte,bryophyte,south,,,Bryum.All,RapidDrain,100,0.36181608041102,0.13018329481567,0.710335183468524,0.456383990460127,0.383794908083326,0.210395721188944 +bryophyte,bryophyte,south,,,Bryum.All,Blowout,100,0.785496823150166,0.552288682340802,0.936170053182698,0.748701430422861,0.7626953023258,0.164234290300031 +bryophyte,bryophyte,south,,,Bryum.All,ThinBreak,100,0.177630627510863,0.0395109624630621,0.541438396542446,0.266696658689805,0.228556761669836,0.186275813433199 +bryophyte,bryophyte,south,,,Bryum.All,Other,100,0.369220119114928,0.137956768322161,0.680255236152907,0.407468292608129,0.395028417552068,0.203938413013872 +bryophyte,bryophyte,south,,,Bryum.All,EnSeismic,100,0.365781638364747,0.109105984933063,0.726248202187522,0.482117914307296,0.394213439632455,0.225867774708772 +bryophyte,bryophyte,south,,,Bryum.All,EnSoftLin,100,0.432965879403245,0.136161044011684,0.73015532052198,0.501672918253629,0.440182924434595,0.230611948893719 +bryophyte,bryophyte,south,,,Bryum.All,TrSoftLin,100,0.598375003084503,0.231942384309547,0.866467582127354,0.613016588965431,0.570677798527738,0.239667173926275 +bryophyte,bryophyte,south,,,Bryum.All,HardLin,100,0.543269605871798,0.185685339654382,0.8051698156106,0.491617478806848,0.524662448415525,0.234944554868102 +bryophyte,bryophyte,south,,,Bryum.All,UrbInd,100,0.269091931035643,0.0749459793071407,0.602497708581384,0.393097858690561,0.306062255080503,0.195641216934879 +bryophyte,bryophyte,south,,,Bryum.All,Wellsites,100,0.236083316614482,0.0628281822437928,0.567869034380772,0.440935456085658,0.282029202943126,0.196959880587044 +bryophyte,bryophyte,south,,,Bryum.All,Crop,100,0.226094915429276,0.0616792382784393,0.53673056556245,0.277542390498237,0.271886591900057,0.189168050240426 +bryophyte,bryophyte,south,,,Bryum.All,TameP,100,0.473937209144201,0.190233717985455,0.793367322745237,0.473780817532282,0.474279037504276,0.224309764246765 +bryophyte,bryophyte,south,,,Bryum.All,RoughP,100,0.182000563172488,0.0428409490132328,0.477307465755811,0.271246111822176,0.226308198686426,0.166853179710751 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Loamy,100,0.116881768630372,0.0467803440065547,0.279842257715781,0.115177000810257,0.144768161705175,0.102229357247624 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,SandyLoam,100,0.126374172369073,0.0355256903279192,0.386852779624687,0.105766760433591,0.167941203056908,0.133268482955815 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,ClaySub,100,0.0222012127265093,0.00710869894873247,0.0744876072774482,0.0253512685216928,0.0324422019146782,0.0313225091229377 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,RapidDrain,100,0.124114535309517,0.0366231084772023,0.413133080544012,0.097554079442326,0.171208069693835,0.142935163034012 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Blowout,100,0.325675724738926,0.0951677973427326,0.584602860062418,0.238386765241013,0.324505367913546,0.19138856617462 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,ThinBreak,100,0.0234545989841816,0.00684616494311195,0.075941455357557,0.0214468610011073,0.0376608631687863,0.0415805790811674 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Other,100,0.0451790761050396,0.014079739123462,0.10996368978794,0.0572581209142173,0.0548796050727854,0.0463032365395135 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSeismic,100,0.0950209927441988,0.0233659361935268,0.269280365239115,0.0707043009314015,0.124614947919977,0.0980538481952514 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,EnSoftLin,100,0.0795591091721303,0.0202586056164327,0.211848761685539,0.0747407719041711,0.101584111786558,0.083270437931287 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,TrSoftLin,100,0.105216759479799,0.024165917198611,0.261213521450868,0.0704598742384681,0.119348740395764,0.0875373266122471 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,HardLin,100,0.124666011886731,0.0299363237701879,0.38438758845396,0.209126134191268,0.169400869150573,0.15076866940986 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,UrbInd,100,0.0320230424660131,0.0096182308441439,0.107426018285097,0.0456100567102081,0.0458712292875631,0.0400668720595159 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Wellsites,100,0.0855092255546693,0.0231272140672548,0.233439430035774,0.0830551181446699,0.111814450336071,0.0910777715195604 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,Crop,100,0.0225028844751815,0.00687389781143332,0.0774809659005287,0.0262246644293447,0.0337579202714013,0.0352352851789998 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,TameP,100,0.0674517415304748,0.0232414350239816,0.172862842555071,0.0615457968167004,0.0839397261239544,0.0636811371363485 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,RoughP,100,0.0552067491448355,0.0159521348921336,0.172662234406974,0.067766730553001,0.0761151328527675,0.0674066782653252 +lichen,lichen,north,,,Cladonia.chlorophaea,WhiteSpruce,100,0.123863977339723,0.0666553420737389,0.362584225503481,0.160230563800225,0.179037246519227,0.154137828073926 +lichen,lichen,north,,,Cladonia.chlorophaea,Pine,100,0.255629826269849,0.115942279803402,0.426242660966481,0.210249809820585,0.270060301425963,0.127483309159312 +lichen,lichen,north,,,Cladonia.chlorophaea,Deciduous,100,0.0885761439749206,0.0479019032437525,0.153452729383058,0.136817798838928,0.0968240342749744,0.0424635980176024 +lichen,lichen,north,,,Cladonia.chlorophaea,Mixedwood,100,0.0551693789471364,0.0292663788747934,0.107517508007163,0.115802848220679,0.0689359081667121,0.0548352100138949 +lichen,lichen,north,,,Cladonia.chlorophaea,BlackSpruce,100,0.414510893717183,0.22931153320838,0.657664332107232,0.403292528595932,0.429904529061087,0.160719379430537 +lichen,lichen,north,,,Cladonia.chlorophaea,TreedFen,100,0.430014547849432,0.19748341406373,0.737175203702905,0.428659382012715,0.453052004804713,0.198890613166299 +lichen,lichen,north,,,Cladonia.chlorophaea,TreedSwamp,100,0.57148826092733,0.360112919781334,0.769251365109486,0.510515102256231,0.571543869675081,0.144106817994487 +lichen,lichen,north,,,Cladonia.chlorophaea,GraminoidFen,100,0.44659163146149,0.205318069655794,0.637972890278277,0.282411753463989,0.438151222883973,0.169235352757687 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyFen,100,0.275156642469067,0.114428624095903,0.526092846191054,0.242010054127684,0.302835437158646,0.174138036356177 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbyBog,100,0.102205620713188,0.0323618249127683,0.215179318439265,0.141260287480395,0.117614439720994,0.0820496262115989 +lichen,lichen,north,,,Cladonia.chlorophaea,ShrubbySwamp,100,0.138389466612621,0.0725958301343758,0.263845133492161,0.184741026553176,0.162381667392983,0.0943525054468544 +lichen,lichen,north,,,Cladonia.chlorophaea,Marsh,100,0.0509229201236212,0.0215291084785836,0.0896458110621052,0.0798473976304544,0.0575222041241785,0.0380163906983426 +lichen,lichen,north,,,Cladonia.chlorophaea,Shrub,100,0.0489327596142341,0.0263435087530753,0.125159689566623,0.0938129845926235,0.0671565541192215,0.0736386739539545 +lichen,lichen,north,,,Cladonia.chlorophaea,Grass,100,0.115351427660767,0.0606201131479313,0.299147403120788,0.141236544546189,0.150112612063812,0.107392673013958 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruceR,100,0.0524747113941247,0.0210709712154691,0.131646892589274,0.0906677860864298,0.0769525688395705,0.0915870038640901 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce1,100,0.10514215881182,0.0542593428168689,0.227371479751055,0.156992993462549,0.129274255311292,0.0956591911648541 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce2,100,0.166086762045827,0.0466159741057085,0.372200967046672,0.179422836074818,0.195084781416314,0.1426178463088 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce3,100,0.166086762045827,0.0466159741057085,0.372200967046672,0.179422836074818,0.195084781416314,0.1426178463088 +lichen,lichen,north,,,Cladonia.chlorophaea,CCWhiteSpruce4,100,0.166086762045827,0.0466159741057085,0.372200967046672,0.179422836074818,0.195084781416314,0.1426178463088 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPineR,100,0.0107766637405456,0.00498531512243173,0.028442997310335,0.0333390984309549,0.0164120035434092,0.0258528791135853 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine1,100,0.175815062480152,0.0824996227471786,0.370446636110802,0.189052904668437,0.214078589892528,0.145337147323658 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine2,100,0.10480227577374,0.0427796784932757,0.274921879570182,0.151392232102977,0.140733602060369,0.122729942872381 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine3,100,0.10480227577374,0.0427796784932757,0.274921879570182,0.151392232102977,0.140733602060369,0.122729942872381 +lichen,lichen,north,,,Cladonia.chlorophaea,CCPine4,100,0.10480227577374,0.0427796784932757,0.274921879570182,0.151392232102977,0.140733602060369,0.122729942872381 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduousR,100,0.0893629226774526,0.0316371353727188,0.190754701463483,0.131298522971376,0.111530752142012,0.102086654758708 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous1,100,0.108539815224987,0.0529492483675981,0.21881598513896,0.140986333328742,0.12744441789165,0.0894815503081481 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous2,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous3,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,CCDeciduous4,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwoodR,100,0.0893629226774526,0.0316371353727188,0.190754701463483,0.131298522971376,0.111530752142012,0.102086654758708 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood1,100,0.108539815224987,0.0529492483675981,0.21881598513896,0.140986333328742,0.12744441789165,0.0894815503081481 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood2,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood3,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,CCMixedwood4,100,0.157627774766932,0.0716243386838284,0.294266506260253,0.188488762029281,0.176277175970776,0.114347043663221 +lichen,lichen,north,,,Cladonia.chlorophaea,EnSeismic,100,0.061508709365106,0.0228000496131086,0.167375574397494,0.103955648973456,0.0807265213954349,0.0625237828390062 +lichen,lichen,north,,,Cladonia.chlorophaea,EnSoftLin,100,0.0288091461412803,0.0131092489208944,0.0722283268250917,0.0520718837817988,0.0386962806520945,0.0360787779640088 +lichen,lichen,north,,,Cladonia.chlorophaea,TrSoftLin,100,0.0962705466895256,0.0300942752436355,0.31039128726642,0.103588894942155,0.134729455058176,0.110167183812186 +lichen,lichen,north,,,Cladonia.chlorophaea,HardLin,100,0.00906823471974668,0.00358428588434641,0.0217446763532672,0.0194687233362852,0.0119894219707347,0.0122153214325307 +lichen,lichen,north,,,Cladonia.chlorophaea,UrbInd,100,0.0259402834191452,0.0115918171049577,0.0599456352382697,0.0399831841699761,0.0335557048576263,0.0301969549367269 +lichen,lichen,north,,,Cladonia.chlorophaea,Wellsites,100,0.0259402935808256,0.00928508135995525,0.0699085846430246,0.0405301490949005,0.034305862973189,0.0280283114967782 +lichen,lichen,north,,,Cladonia.chlorophaea,Crop,100,0.00496481712004927,0.00174421079645817,0.0153593331090318,0.0106228365914737,0.00826780209727968,0.0107163663001588 +lichen,lichen,north,,,Cladonia.chlorophaea,TameP,100,0.0234331451594858,0.013893016069748,0.0448875697494528,0.0384099180416212,0.0283622624908267,0.0217276941662523 +lichen,lichen,north,,,Cladonia.chlorophaea,RoughP,100,0.0483046643342221,0.0197567908589569,0.146076039288575,0.0659587534674029,0.0659251714213943,0.0556534779443939 +lichen,lichen,north,,,Physcia.adscendens,WhiteSpruce,100,0.0178943732239335,0.00779308754131188,0.0341551692418009,0.0417321760259875,0.0196291046092155,0.0113436856257764 +lichen,lichen,north,,,Physcia.adscendens,Pine,100,0.0326713856323131,0.0197138697196489,0.0573642243895369,0.0388803690684755,0.0362478422982058,0.0171450258401409 +lichen,lichen,north,,,Physcia.adscendens,Deciduous,100,0.115827744002919,0.0609526035032703,0.217647880454773,0.182221182455449,0.13403756979712,0.0730576695140026 +lichen,lichen,north,,,Physcia.adscendens,Mixedwood,100,0.0432889448155894,0.0227063247676512,0.0840488762088917,0.0884733355341471,0.0512279532269963,0.031471758178184 +lichen,lichen,north,,,Physcia.adscendens,BlackSpruce,100,0.0244110560121506,0.00741810961766237,0.0691733708834468,0.0297257197367906,0.0321970438545603,0.0279717266407556 +lichen,lichen,north,,,Physcia.adscendens,TreedFen,100,0.00203104829827719,0.00113645984706426,0.00444376259374066,0.0096330609515934,0.00247635195320162,0.00156239627424154 +lichen,lichen,north,,,Physcia.adscendens,TreedSwamp,100,0.10990356624155,0.0344813329121114,0.244562882056321,0.13750034253386,0.130426138262637,0.0937676390094203 +lichen,lichen,north,,,Physcia.adscendens,GraminoidFen,100,0.0293194889863624,0.0126769600543568,0.0851117511739192,0.0740408487785589,0.0420527181791147,0.0331217454390456 +lichen,lichen,north,,,Physcia.adscendens,ShrubbyFen,100,0.00354286231321163,0.00168951757558488,0.00776632117617678,0.0151140673106255,0.0043538679078374,0.00269846041250215 +lichen,lichen,north,,,Physcia.adscendens,ShrubbyBog,100,0.0072699740008556,0.00334663017622155,0.0205103953812144,0.018187687131778,0.0102168753277131,0.0088500138424895 +lichen,lichen,north,,,Physcia.adscendens,ShrubbySwamp,100,0.016335067890191,0.00704130154101255,0.0438312320858758,0.0383343029334143,0.0223740380973022,0.0164420831838449 +lichen,lichen,north,,,Physcia.adscendens,Marsh,100,0.00734015971558982,0.00332773954891418,0.0163431991708352,0.0233928964085336,0.00878011319791531,0.00566962160851667 +lichen,lichen,north,,,Physcia.adscendens,Shrub,100,0.0417791726876035,0.0272947812981361,0.0656186479442742,0.0666814246971562,0.0433539925691456,0.0152476263754361 +lichen,lichen,north,,,Physcia.adscendens,Grass,100,0.0995220166777908,0.0449555839498393,0.205659878818225,0.0901247981807328,0.117725262359247,0.0790184764876458 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruceR,100,0.0035368604672865,0.00177940004853552,0.00734968770098609,0.0169696165447101,0.00440135598317654,0.00322631369281432 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce1,100,0.0522418040459827,0.0237023483543194,0.110613345334664,0.102505230126881,0.0654897528880323,0.0449303771041478 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce2,100,0.105522314741199,0.0511561123537146,0.242162396717556,0.14765016798871,0.135159974061662,0.0858040654534871 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce3,100,0.105522314741199,0.0511561123537146,0.242162396717556,0.14765016798871,0.135159974061662,0.0858040654534871 +lichen,lichen,north,,,Physcia.adscendens,CCWhiteSpruce4,100,0.105522314741199,0.0511561123537146,0.242162396717556,0.14765016798871,0.135159974061662,0.0858040654534871 +lichen,lichen,north,,,Physcia.adscendens,CCPineR,100,0.00384567346978985,0.00202896611344181,0.00806445173467276,0.0171492164111918,0.00470253563796471,0.00309505788220613 +lichen,lichen,north,,,Physcia.adscendens,CCPine1,100,0.00501253362558876,0.00298298325083644,0.0110733473825161,0.0265625131932835,0.0066162049509765,0.00469631944316543 +lichen,lichen,north,,,Physcia.adscendens,CCPine2,100,0.0255688669110923,0.00930926521923675,0.0567707364910576,0.0515635294496696,0.0306615904269179,0.0208033557317916 +lichen,lichen,north,,,Physcia.adscendens,CCPine3,100,0.0255688669110923,0.00930926521923675,0.0567707364910576,0.0515635294496696,0.0306615904269179,0.0208033557317916 +lichen,lichen,north,,,Physcia.adscendens,CCPine4,100,0.0255688669110923,0.00930926521923675,0.0567707364910576,0.0515635294496696,0.0306615904269179,0.0208033557317916 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduousR,100,0.0272039977096528,0.0129538323130716,0.0555795689221703,0.0555525290793276,0.0319167744007033,0.0192426536902108 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous1,100,0.0454638526667675,0.0283210883010449,0.0968222961618394,0.0846489827961707,0.0561726558457389,0.0319420684761516 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous2,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous3,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,CCDeciduous4,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwoodR,100,0.0272039977096528,0.0129538323130716,0.0555795689221703,0.0555525290793276,0.0319167744007033,0.0192426536902108 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood1,100,0.0454638526667675,0.0283210883010449,0.0968222961618394,0.0846489827961707,0.0561726558457389,0.0319420684761516 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood2,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood3,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,CCMixedwood4,100,0.0609233836324821,0.0248154700139839,0.153000952988122,0.0932548262463118,0.082315899279834,0.0643108271557279 +lichen,lichen,north,,,Physcia.adscendens,EnSeismic,100,0.00659406178070458,0.00236114219661377,0.0139409746493518,0.0189402458111425,0.00788639503252848,0.00583777040554358 +lichen,lichen,north,,,Physcia.adscendens,EnSoftLin,100,0.0141041862116304,0.00595513213481449,0.0409404414884516,0.0280436433302379,0.0205212516136275,0.0161509659346523 +lichen,lichen,north,,,Physcia.adscendens,TrSoftLin,100,0.00472140901602521,0.00222730141810934,0.0109079315601621,0.0196590192362782,0.00609748278489262,0.00481609039844263 +lichen,lichen,north,,,Physcia.adscendens,HardLin,100,0.0218051220715684,0.0100965353647845,0.0510122721673549,0.0348874368867459,0.0281942923025502,0.0226396832920791 +lichen,lichen,north,,,Physcia.adscendens,UrbInd,100,0.0160523621689502,0.00640547861913982,0.0375962988686445,0.038226183628617,0.0193146360184344,0.0132195945552441 +lichen,lichen,north,,,Physcia.adscendens,Wellsites,100,0.00615367641789696,0.0028741898277116,0.015263962187802,0.0195364714768302,0.0079395880786983,0.00650565962013218 +lichen,lichen,north,,,Physcia.adscendens,Crop,100,0.0120869601820759,0.00612323902383242,0.0243981620567889,0.0187347369810745,0.0144856106616434,0.00930677208515324 +lichen,lichen,north,,,Physcia.adscendens,TameP,100,0.0204466283474073,0.0101330773830998,0.039264438279333,0.0320140311491714,0.0259619834455349,0.0241927148274088 +lichen,lichen,north,,,Physcia.adscendens,RoughP,100,0.0841076154076175,0.0416423806327602,0.185625789588896,0.120604736486396,0.102522104785208,0.0675623539085792 +lichen,lichen,south,,,Cladonia.chlorophaea,Loamy,100,0.0470382368224669,0.0180508004504727,0.0812120556291711,0.0597277251451078,0.0489246583582674,0.0275828824331243 +lichen,lichen,south,,,Cladonia.chlorophaea,SandyLoam,100,0.0294159624291714,0.0140418351868119,0.0663465917876924,0.0655647445815341,0.036135501365487,0.0246942020919657 +lichen,lichen,south,,,Cladonia.chlorophaea,ClaySub,100,0.0102144647706691,0.00386942063858962,0.0234587618383477,0.0361988055512762,0.0123245754176545,0.00794143394601473 +lichen,lichen,south,,,Cladonia.chlorophaea,RapidDrain,100,0.0347146353175341,0.00894070275013158,0.0871921266685349,0.0671288270967656,0.0439885299931287,0.0374777184384543 +lichen,lichen,south,,,Cladonia.chlorophaea,Blowout,100,0.0260751887694143,0.0119035000063196,0.0539982591219273,0.065567183985177,0.0296394777508318,0.0181413115117231 +lichen,lichen,south,,,Cladonia.chlorophaea,ThinBreak,100,0.0154521378064151,0.0055727716424229,0.029230497001701,0.0456180486741436,0.0164371178440853,0.00936153234574576 +lichen,lichen,south,,,Cladonia.chlorophaea,Other,100,0.00437103626630467,0.00201150759791279,0.00913600046309438,0.0188250605196629,0.00532386167882648,0.0037824664185394 +lichen,lichen,south,,,Cladonia.chlorophaea,EnSeismic,100,0.0073240316114717,0.00254407463822843,0.0201364130877845,0.0232927646410083,0.00977283341715917,0.0082444911146095 +lichen,lichen,south,,,Cladonia.chlorophaea,EnSoftLin,100,0.00491355066333481,0.00183589931506604,0.0111483928464446,0.0175964661762687,0.00627764706437926,0.00450989447792197 +lichen,lichen,south,,,Cladonia.chlorophaea,TrSoftLin,100,0.00490713543082027,0.00199690183036351,0.0124417128147278,0.0210304145687519,0.00661202638787834,0.00554943197428193 +lichen,lichen,south,,,Cladonia.chlorophaea,HardLin,100,0.00352177766852602,0.00120049806924111,0.00848524223723042,0.0168326781004455,0.00440358943710259,0.00382045067158302 +lichen,lichen,south,,,Cladonia.chlorophaea,UrbInd,100,0.00366505759709876,0.00116503635255661,0.0103423957935515,0.0171046511598148,0.00471471347160245,0.00411408206060922 +lichen,lichen,south,,,Cladonia.chlorophaea,Wellsites,100,0.0241912224039378,0.00414471588363865,0.0918351741696928,0.075570998415282,0.037000294860236,0.0354305720497369 +lichen,lichen,south,,,Cladonia.chlorophaea,Crop,100,0.000608005662772326,0.000258427683192614,0.00130462212591467,0.00219321929279424,0.000768385371893047,0.00059165711926264 +lichen,lichen,south,,,Cladonia.chlorophaea,TameP,100,0.00795103658630074,0.00237408500184907,0.0193039322342188,0.0222832297619207,0.00979192526658487,0.00748795843891711 +lichen,lichen,south,,,Cladonia.chlorophaea,RoughP,100,0.00708614653443702,0.00250893643245598,0.0169954226962896,0.0232570250948312,0.00875832422247919,0.00719463673179495 +lichen,lichen,south,,,Physcia.adscendens,Loamy,100,0.168208527306778,0.0598646958016293,0.319897427736289,0.191539524792095,0.180117160683903,0.107357355301827 +lichen,lichen,south,,,Physcia.adscendens,SandyLoam,100,0.570353631519762,0.258831931733487,0.787390463545698,0.47212665072262,0.541880009619477,0.198872038599933 +lichen,lichen,south,,,Physcia.adscendens,ClaySub,100,0.0656704353476676,0.0256627695967851,0.150279722572859,0.0930616688338325,0.0827146851761154,0.0609777725703621 +lichen,lichen,south,,,Physcia.adscendens,RapidDrain,100,0.378506259303759,0.182995431621068,0.673666469569668,0.299819326285583,0.402982602526182,0.185362480858664 +lichen,lichen,south,,,Physcia.adscendens,Blowout,100,0.0536100844794234,0.0211646972361691,0.168129691514032,0.0590335560161137,0.0722538666086673,0.0576406530054671 +lichen,lichen,south,,,Physcia.adscendens,ThinBreak,100,0.116991312755031,0.0385161694780312,0.315035193269789,0.0887993397036373,0.144757960932273,0.108403148448878 +lichen,lichen,south,,,Physcia.adscendens,Other,100,0.262230199397096,0.100584390056568,0.451691414412498,0.253161029743585,0.271423306289971,0.132516235274568 +lichen,lichen,south,,,Physcia.adscendens,EnSeismic,100,0.360218625117077,0.128469305364939,0.626672813057688,0.392066598196877,0.362662750843482,0.192664286912793 +lichen,lichen,south,,,Physcia.adscendens,EnSoftLin,100,0.133940372413769,0.0389353892024766,0.359306453960241,0.199606327527873,0.171905445772777,0.146343737468989 +lichen,lichen,south,,,Physcia.adscendens,TrSoftLin,100,0.391970468191306,0.100042240143942,0.67957428500072,0.384440449804642,0.378771561805723,0.209888164525893 +lichen,lichen,south,,,Physcia.adscendens,HardLin,100,0.0641604677746357,0.0214841331850674,0.159287731719984,0.0903428321717492,0.0868401041410498,0.0756254941824357 +lichen,lichen,south,,,Physcia.adscendens,UrbInd,100,0.197455524910675,0.0366421963181283,0.551893015628847,0.133640114131234,0.25068856405129,0.206503484848292 +lichen,lichen,south,,,Physcia.adscendens,Wellsites,100,0.231288933408061,0.031569281095045,0.621610091636328,0.19463004648108,0.278006439788254,0.229882150305352 +lichen,lichen,south,,,Physcia.adscendens,Crop,100,0.00105503719263599,0.000411567868472465,0.00231798650685899,0.00200214957457342,0.00128751317992452,0.000804819401711763 +lichen,lichen,south,,,Physcia.adscendens,TameP,100,0.0142277140273736,0.00547962937151365,0.0286187701293379,0.0147630929337545,0.0166198976863809,0.0111840855476261 +lichen,lichen,south,,,Physcia.adscendens,RoughP,100,0.0101092169552584,0.00419236221575344,0.0196240498624118,0.0124711875346818,0.0113001117971998,0.00633411112610968 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Decid,100,0.0235785269817257,0.00796109023840367,0.0812138022494898,0.0244438161537447,0.0338000507199132,0.0315903318856099 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Mixedwood,100,0.0142645091767728,0.00623877287773729,0.0330713725846217,0.018244077073362,0.0174651581718716,0.0118384384329346 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Pine,100,0.0226424577410673,0.0117166918822613,0.0422479150077301,0.0218156856543157,0.025331426845894,0.0126824969701464 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Spruce,100,0.0228432310409643,0.00794206722318919,0.0632626534523409,0.0249676695779629,0.0305577923557961,0.0253111597606287 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedBog,100,0.0113816712023043,0.00367079704939337,0.0229044393240435,0.0163246075462524,0.0130278037787565,0.00793649558981784 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedFen,100,0.0101012236163807,0.0052616679134441,0.0232135931241339,0.0162033353768527,0.0129934127800193,0.0097835212640621 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,TreedSwamp,100,0.0113274380320751,0.00527221022443333,0.0245585285641555,0.0169257400685579,0.013416696527713,0.00815474158502054 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GrassHerb,100,0.0110547562933583,0.00498587816917442,0.0240454393257742,0.0195189698246484,0.0125907288477091,0.00681757392168273 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Shrub,100,0.00950173147671643,0.00393177462135218,0.0226852965965145,0.0199070300314277,0.0110507311030393,0.00667259010426987 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,GraminoidFen,100,0.00743638596560827,0.00266104494502514,0.0145439947027821,0.0145397395835169,0.00819165455023253,0.0048615079460615 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,Marsh,100,0.00743638596560827,0.00266104494502514,0.0145439947027821,0.0145397395835169,0.00819165455023253,0.0048615079460615 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyBog,100,0.00462668703166207,0.00161435975652113,0.00932558349183425,0.0106853868570127,0.00515774804238873,0.00312585253108214 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbyFen,100,0.00462668703166207,0.00161435975652113,0.00932558349183425,0.0106853868570127,0.00515774804238873,0.00312585253108214 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,ShrubbySwamp,100,0.00712301374575447,0.00238740133263279,0.0138553277639541,0.0133868586272888,0.00775103789030851,0.00487676811567532 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecidR,100,0.0328699975043429,0.0102239444723827,0.13193121391764,0.0474178063842245,0.0566062304192511,0.065210401189626 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid1,100,0.0712247319564649,0.018371629399623,0.244007366125491,0.0714275332775695,0.107345056214751,0.111195010438518 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid2,100,0.0281532301668832,0.00767092494260468,0.108647346313864,0.0474178063842245,0.0419015711660971,0.0452460377624158 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid3,100,0.0303251496620085,0.00864021392058095,0.136704853283697,0.0474178063842245,0.049648859010962,0.0544220204861751 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCDecid4,100,0.0303251496620085,0.00864021392058095,0.136704853283697,0.0474178063842245,0.049648859010962,0.0544220204861751 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwoodR,100,0.0303251496620085,0.00864021392058095,0.136704853283697,0.0474178063842245,0.0494983671246604,0.0544657940858157 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood1,100,0.029788663758466,0.00824760082663261,0.131825192611319,0.0474178063842245,0.0485019616856877,0.0531132332637826 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood2,100,0.0325820027781826,0.00877134429777262,0.209255683936447,0.0474178063842245,0.0686116210711899,0.0836047028477783 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood3,100,0.0303251496620085,0.00864021392058095,0.136704853283697,0.0474178063842245,0.049648859010962,0.0544220204861751 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCMixedwood4,100,0.0303251496620085,0.00864021392058095,0.136704853283697,0.0474178063842245,0.049648859010962,0.0544220204861751 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPineR,100,0.0390609151572816,0.00963934407535739,0.134993983615958,0.0434754323748698,0.0582331683838389,0.058018956437177 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,CCPine1,100,0.0274519759342987,0.00774140739667266,0.0888133128751994,0.0353491995914119,0.039676266132394,0.0390067701990028 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+mite,mite,north,,,Ceratozetes.gracilis,TreedSwamp,100,0.0571232276355526,0.0167364323472507,0.131332194481884,0.061421923343376,0.0670468534349344,0.0486580608586327 +mite,mite,north,,,Ceratozetes.gracilis,GraminoidFen,100,0.0152548501241494,0.00657431240869516,0.0320099350729634,0.0246160759474848,0.0177516957716873,0.0112886480550593 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbyFen,100,0.012790916744018,0.00422250716717059,0.0321403921303354,0.0231774355740017,0.0157525951218134,0.0112506677465594 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbyBog,100,0.00251576467475831,0.00133843466603127,0.00516415738080671,0.00434888507766517,0.00302067403466159,0.00185345588284203 +mite,mite,north,,,Ceratozetes.gracilis,ShrubbySwamp,100,0.0565717304693906,0.0286292756682262,0.0990203462667022,0.0620598776562816,0.0613444498689728,0.029935808055033 +mite,mite,north,,,Ceratozetes.gracilis,Marsh,100,0.0145514928690108,0.00574459355391164,0.0379936736138477,0.0139708169973481,0.0190468822609791,0.0146275650599231 +mite,mite,north,,,Ceratozetes.gracilis,Shrub,100,0.0332814472668413,0.0123136430836594,0.0643416637818544,0.0326917133555118,0.0380541795117723,0.021558633556997 +mite,mite,north,,,Ceratozetes.gracilis,Grass,100,0.0128310777959623,0.00550499885522012,0.0260229246819418,0.0198424321202836,0.0157256883238104,0.0119850936877812 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruceR,100,0.00146268468764183,0.000710213035711564,0.00301899518262035,0.00296318377307484,0.00188194588358498,0.00166301932719051 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce1,100,0.00905613496183356,0.00416074642472444,0.0241458856094004,0.0154489388605393,0.0118456798698586,0.0100351329889517 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce2,100,0.0109116985154183,0.00458645596287481,0.0253074142280324,0.0202021550024924,0.0128784787576326,0.00914521061798094 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce3,100,0.0109116985154183,0.00458645596287481,0.0253074142280324,0.0202021550024924,0.0128784787576326,0.00914521061798094 +mite,mite,north,,,Ceratozetes.gracilis,CCWhiteSpruce4,100,0.0109116985154183,0.00458645596287481,0.0253074142280324,0.0202021550024924,0.0128784787576326,0.00914521061798094 +mite,mite,north,,,Ceratozetes.gracilis,CCPineR,100,0.00122610739235735,0.000657953262856708,0.00281839327040506,0.00270898722191647,0.00165837271068416,0.00161237203052584 +mite,mite,north,,,Ceratozetes.gracilis,CCPine1,100,0.00310326636584989,0.00167795877643985,0.00683676811738885,0.00560263822791497,0.00398286522968953,0.00372579352520519 +mite,mite,north,,,Ceratozetes.gracilis,CCPine2,100,0.0054512052513153,0.00207313806769111,0.0111132780176104,0.00839874476683232,0.00670023799371426,0.00595007777464844 +mite,mite,north,,,Ceratozetes.gracilis,CCPine3,100,0.0054512052513153,0.00207313806769111,0.0111132780176104,0.00839874476683232,0.00670023799371426,0.00595007777464844 +mite,mite,north,,,Ceratozetes.gracilis,CCPine4,100,0.0054512052513153,0.00207313806769111,0.0111132780176104,0.00839874476683232,0.00670023799371426,0.00595007777464844 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduousR,100,0.00687765085534013,0.0034270746388475,0.0164988929454391,0.0124894467727164,0.00968594021151222,0.00909453958406985 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous1,100,0.0173489411977172,0.00763102575536225,0.0418604859906182,0.0315697398121216,0.0225447234443475,0.0189236387834596 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous2,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous3,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,CCDeciduous4,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwoodR,100,0.00687765085534013,0.0034270746388475,0.0164988929454391,0.0124894467727164,0.00968594021151222,0.00909453958406985 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood1,100,0.0173489411977172,0.00763102575536225,0.0418604859906182,0.0315697398121216,0.0225447234443475,0.0189236387834596 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood2,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood3,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,CCMixedwood4,100,0.00959633734472561,0.00312543838273353,0.0385505271636749,0.0142578278538103,0.0152840426582839,0.0149784405457595 +mite,mite,north,,,Ceratozetes.gracilis,EnSeismic,100,0.0277805577491213,0.00637106851181518,0.060001765583835,0.0431427656629786,0.0313424165359436,0.0242550899509154 +mite,mite,north,,,Ceratozetes.gracilis,EnSoftLin,100,0.0132510823493658,0.00506379509506233,0.0276827225715731,0.0191349522872354,0.0154630835530774,0.0110060153676669 +mite,mite,north,,,Ceratozetes.gracilis,TrSoftLin,100,0.00847152124348901,0.001981623301087,0.0205838740936514,0.0104216422917097,0.0103141449049363,0.00987869049476466 +mite,mite,north,,,Ceratozetes.gracilis,HardLin,100,0.00767431940633337,0.00392219816814452,0.0212253029346371,0.0147237570029223,0.0111186665146697,0.00813642421740542 +mite,mite,north,,,Ceratozetes.gracilis,UrbInd,100,0.0454196926707864,0.0192262184908953,0.121583158097333,0.0792581753031336,0.0547364893015369,0.0401884464691352 +mite,mite,north,,,Ceratozetes.gracilis,Wellsites,100,0.0123184135494451,0.00461400877643937,0.0255403526101597,0.0243796022869871,0.0148883411767009,0.0102298328981295 +mite,mite,north,,,Ceratozetes.gracilis,Crop,100,0.0195361298842956,0.00703111740247097,0.0418857836594653,0.0325207137703129,0.0237797951505881,0.0176327275835036 +mite,mite,north,,,Ceratozetes.gracilis,TameP,100,0.0242521147591876,0.0081195856884088,0.0574260434716671,0.0432297466703646,0.0291354505932595,0.0191865050629809 +mite,mite,north,,,Ceratozetes.gracilis,RoughP,100,0.123680974046506,0.0409093272253682,0.232639598807331,0.16378251919553,0.134302500686086,0.08740131028841 +mite,mite,north,,,Trhypochthonius.tectorum,WhiteSpruce,100,0.0238889093832923,0.00677586413873274,0.100787499449532,0.0454100702942058,0.0420442265554613,0.0451269291031079 +mite,mite,north,,,Trhypochthonius.tectorum,Pine,100,0.0339577483105446,0.0121819963331035,0.0782739281895976,0.0540245549102675,0.0434541434132161,0.0391411185399141 +mite,mite,north,,,Trhypochthonius.tectorum,Deciduous,100,0.0210041831128162,0.00801778158357188,0.0750184428300513,0.0467769583351974,0.0340296486333793,0.0385639954096542 +mite,mite,north,,,Trhypochthonius.tectorum,Mixedwood,100,0.0208441620719432,0.00700191413030664,0.0533652220798533,0.0465669285383791,0.0302252851481188,0.0306746778875878 +mite,mite,north,,,Trhypochthonius.tectorum,BlackSpruce,100,0.0500448394246835,0.0143944435118653,0.230471026803588,0.0781669036443615,0.0830879004244384,0.102730121384394 +mite,mite,north,,,Trhypochthonius.tectorum,TreedFen,100,0.0467064288157986,0.0077656122977763,0.181973920183836,0.0660128866775939,0.0777815741523759,0.100765681382413 +mite,mite,north,,,Trhypochthonius.tectorum,TreedSwamp,100,0.0469484511742001,0.014078772695213,0.15984172868998,0.059434391666355,0.077641623550171,0.0978082049469084 +mite,mite,north,,,Trhypochthonius.tectorum,GraminoidFen,100,0.0289441123417292,0.00751318280485393,0.0854461731082165,0.0533255128164798,0.0464748131619959,0.0573846958841634 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyFen,100,0.037856153917241,0.0101865962678451,0.161071004918341,0.056016511718773,0.0697612096351034,0.0898780896583694 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbyBog,100,0.0171592547887325,0.00453611636600998,0.0512339691933683,0.0562597597884134,0.0272654526148224,0.03471465084243 +mite,mite,north,,,Trhypochthonius.tectorum,ShrubbySwamp,100,0.0111089986741876,0.00230029703513256,0.0403263172259942,0.0398679512796629,0.0195416068549834,0.0262059324545975 +mite,mite,north,,,Trhypochthonius.tectorum,Marsh,100,0.0140258042868618,0.00477629074901272,0.0547176460493879,0.0433187130955129,0.0256163978076967,0.0307011392202382 +mite,mite,north,,,Trhypochthonius.tectorum,Shrub,100,0.00938773132538067,0.00238098282110676,0.0513247455709765,0.0407470625842792,0.0203482950402998,0.0283122879851832 +mite,mite,north,,,Trhypochthonius.tectorum,Grass,100,0.0487852223961219,0.0101273385373973,0.210553122174105,0.0536916558688223,0.0903378110942337,0.11814334218981 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruceR,100,0.0802864046430631,0.0185251859927411,0.254732744914542,0.0911261638218472,0.114511008326704,0.11447660404141 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce1,100,0.0198833518520177,0.00577801882197554,0.0628107912643764,0.0461306170397789,0.0349306194643836,0.056705277021363 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce2,100,0.0238356169835986,0.00868828042532228,0.0972409014614257,0.0461306170397789,0.0456204921889688,0.0666739799861715 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce3,100,0.0238356169835986,0.00868828042532228,0.0972409014614257,0.0461306170397789,0.0456204921889688,0.0666739799861715 +mite,mite,north,,,Trhypochthonius.tectorum,CCWhiteSpruce4,100,0.0238356169835986,0.00868828042532228,0.0972409014614257,0.0461306170397789,0.0456204921889688,0.0666739799861715 +mite,mite,north,,,Trhypochthonius.tectorum,CCPineR,100,0.154291035002302,0.0509243111334446,0.367287646080455,0.158981687296497,0.194025505391199,0.153260871632453 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine1,100,0.0508260637688376,0.0130803943499074,0.129534091367484,0.0624999970758866,0.0715981110832687,0.0927840977482612 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine2,100,0.0422708861324968,0.0141115714453009,0.155567566228181,0.0624999970758866,0.0660941427393879,0.0838154363079195 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine3,100,0.0422708861324968,0.0141115714453009,0.155567566228181,0.0624999970758866,0.0660941427393879,0.0838154363079195 +mite,mite,north,,,Trhypochthonius.tectorum,CCPine4,100,0.0422708861324968,0.0141115714453009,0.155567566228181,0.0624999970758866,0.0660941427393879,0.0838154363079195 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduousR,100,0.0283435401399313,0.00894741212967256,0.133988479924369,0.0758256609216894,0.0545780825035799,0.0742196211411867 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous1,100,0.0107995016910687,0.00377648922748416,0.0461751787360658,0.0461306170397789,0.0196746907168441,0.0224908462582121 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous2,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous3,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,CCDeciduous4,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwoodR,100,0.0283435401399313,0.00894741212967256,0.133988479924369,0.0758256609216894,0.0545780825035799,0.0742196211411867 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood1,100,0.0107995016910687,0.00377648922748416,0.0461751787360658,0.0461306170397789,0.0196746907168441,0.0224908462582121 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood2,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood3,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,CCMixedwood4,100,0.0141020249176101,0.00370065867625562,0.0490190517639091,0.0461306170397789,0.0235594689724711,0.0286896500163611 +mite,mite,north,,,Trhypochthonius.tectorum,EnSeismic,100,0.028535923865639,0.00654700382576224,0.10899122611451,0.0834089416573685,0.0520707787114312,0.0829025351162604 +mite,mite,north,,,Trhypochthonius.tectorum,EnSoftLin,100,0.0207534836465149,0.00434458988956942,0.0674153628372626,0.0478802872049836,0.0323543621599538,0.036332890893197 +mite,mite,north,,,Trhypochthonius.tectorum,TrSoftLin,100,0.00548727259661542,0.00192485734419254,0.0204931678352081,0.0468035425561821,0.0109160230773211,0.0151657553646535 +mite,mite,north,,,Trhypochthonius.tectorum,HardLin,100,0.0211814625298449,0.00616904287083367,0.0725892792624827,0.0353500369895466,0.0415415657075242,0.0758890373295071 +mite,mite,north,,,Trhypochthonius.tectorum,UrbInd,100,0.0121013512327328,0.00324232298738685,0.0368432632325332,0.0335752758675474,0.0184284373461177,0.0202282872861996 +mite,mite,north,,,Trhypochthonius.tectorum,Wellsites,100,0.0340517340984264,0.00857837185563149,0.166697427228183,0.0399206342672845,0.0598251395875998,0.080362113489787 +mite,mite,north,,,Trhypochthonius.tectorum,Crop,100,0.0095829988916377,0.0031138348217075,0.0310444687691104,0.0276062157536913,0.014657335104793,0.0183966857790212 +mite,mite,north,,,Trhypochthonius.tectorum,TameP,100,0.0188152242653272,0.0062828814517384,0.0895951679853885,0.0396030587559356,0.034353823720597,0.0421704154279756 +mite,mite,north,,,Trhypochthonius.tectorum,RoughP,100,0.0309530601920883,0.00755156266409433,0.0907216339686541,0.0714106623632365,0.0480909208188323,0.0560782396271878 +mite,mite,south,,,Ceratozetes.gracilis,Loamy,100,0.00888798646696409,0.00244435345922289,0.0202198727643725,0.00882687291847061,0.00972890960498466,0.00682696527957138 +mite,mite,south,,,Ceratozetes.gracilis,SandyLoam,100,0.003127749324314,0.0013772410000535,0.00701251647778737,0.0034847088953633,0.00369359005465551,0.00232208939649853 +mite,mite,south,,,Ceratozetes.gracilis,ClaySub,100,0.00181322900789458,0.000726048059463813,0.00365192496510208,0.00262320814741028,0.00198374409228241,0.00114971132328832 +mite,mite,south,,,Ceratozetes.gracilis,RapidDrain,100,0.00559528919649271,0.00217249748492683,0.0130539015568707,0.00608021031756068,0.0066877385441151,0.00495312346825161 +mite,mite,south,,,Ceratozetes.gracilis,Blowout,100,0.00155835861745863,0.000681058215008114,0.00344766266892219,0.00237550963076549,0.00187221820792357,0.00112923985604015 +mite,mite,south,,,Ceratozetes.gracilis,ThinBreak,100,0.00168087840836476,0.000692353159792071,0.00349659670508648,0.00242897446172947,0.00199908267061752,0.00124777708896489 +mite,mite,south,,,Ceratozetes.gracilis,Other,100,0.00211381317232151,0.00093541381100829,0.0044029845128222,0.00263971632746513,0.00241226581782114,0.00148885606285439 +mite,mite,south,,,Ceratozetes.gracilis,EnSeismic,100,0.00874895433780201,0.002554683646595,0.0405897107005413,0.00718827301556243,0.0163277035094911,0.0224571233824888 +mite,mite,south,,,Ceratozetes.gracilis,EnSoftLin,100,0.00890340794809456,0.002554683646595,0.0386448747470565,0.00718827301556243,0.0158684227423162,0.0199146959687439 +mite,mite,south,,,Ceratozetes.gracilis,TrSoftLin,100,0.0112028087471026,0.00311000612812068,0.0323865495848314,0.00782010538323901,0.0152167804935489,0.0135126337322947 +mite,mite,south,,,Ceratozetes.gracilis,HardLin,100,0.0014057817890851,0.00053451774665277,0.00304989792503979,0.00235911183402676,0.00162402635417045,0.00101042614119221 +mite,mite,south,,,Ceratozetes.gracilis,UrbInd,100,0.00151803544189791,0.00059630252388441,0.00373286986994329,0.00204648635172349,0.00192597196383251,0.00135818320652997 +mite,mite,south,,,Ceratozetes.gracilis,Wellsites,100,0.00080869240080573,0.000306563625907172,0.00200380208468222,0.00170188942786697,0.000987659927946696,0.000712031986343264 +mite,mite,south,,,Ceratozetes.gracilis,Crop,100,0.00151471438815518,0.000378860473194127,0.00367270218697332,0.00259320087178522,0.00174772672682963,0.00131993451339457 +mite,mite,south,,,Ceratozetes.gracilis,TameP,100,0.0014300437071179,0.000651767154659221,0.00304533626066793,0.00302380446706365,0.00167873365730462,0.00105433769178139 +mite,mite,south,,,Ceratozetes.gracilis,RoughP,100,0.00144073667885981,0.000618583291677521,0.00350930283898099,0.00240069830914299,0.00173235891879787,0.00125936713901792 +mite,mite,south,,,Trhypochthonius.tectorum,Loamy,100,0.0367143049710681,0.00701217047928515,0.0919580856152098,0.0544473280466744,0.0443274790642027,0.036546203378427 +mite,mite,south,,,Trhypochthonius.tectorum,SandyLoam,100,0.0303309838571669,0.00616890189708524,0.0835745553884545,0.0309629294988475,0.0383016425942173,0.0343976001924653 +mite,mite,south,,,Trhypochthonius.tectorum,ClaySub,100,0.0288473403572705,0.00484018053724867,0.0872965705868749,0.0372855553100201,0.0369343663154119,0.036754240369821 +mite,mite,south,,,Trhypochthonius.tectorum,RapidDrain,100,0.0181344081726155,0.00327248346712422,0.0799432845423079,0.0193187162515081,0.0312227000818001,0.0322961206589436 +mite,mite,south,,,Trhypochthonius.tectorum,Blowout,100,0.0233941786615412,0.00457510609928149,0.0602050081921705,0.0258250448201751,0.0316029939765164,0.0281384703098839 +mite,mite,south,,,Trhypochthonius.tectorum,ThinBreak,100,0.0202552075979793,0.00355800050548867,0.0594093131209152,0.0215938033932772,0.0278170654762204,0.0257018377338745 +mite,mite,south,,,Trhypochthonius.tectorum,Other,100,0.0184949389659365,0.00280407600846032,0.0670522161262652,0.0209154741630786,0.0265851961911507,0.0259255210398143 +mite,mite,south,,,Trhypochthonius.tectorum,EnSeismic,100,0.0118095551573089,0.00208334445950065,0.0484082565364264,0.012071708052853,0.0194708400245614,0.0223161826955657 +mite,mite,south,,,Trhypochthonius.tectorum,EnSoftLin,100,0.0116357369734631,0.00160923074215746,0.0357552882216713,0.012071708052853,0.015230166005003,0.0141647837002603 +mite,mite,south,,,Trhypochthonius.tectorum,TrSoftLin,100,0.00884402890727169,0.00117139556107792,0.0272032716545896,0.00950883665281393,0.0116658276803315,0.0112187569565196 +mite,mite,south,,,Trhypochthonius.tectorum,HardLin,100,0.0165874436745049,0.00268470867509706,0.0496743490074107,0.0233658844622869,0.0251928048312843,0.0256017681325439 +mite,mite,south,,,Trhypochthonius.tectorum,UrbInd,100,0.0143733924790559,0.00174422812831114,0.0420562093089619,0.0233658844622869,0.0207088038209328,0.0223811312528854 +mite,mite,south,,,Trhypochthonius.tectorum,Wellsites,100,0.0198800749681581,0.00261285422323671,0.0637497678775946,0.0247924008862883,0.0283722203668297,0.0322434546058089 +mite,mite,south,,,Trhypochthonius.tectorum,Crop,100,0.0295559091360234,0.00506271883428897,0.0800909895480595,0.0344211245391687,0.040959838922507,0.0519280945473962 +mite,mite,south,,,Trhypochthonius.tectorum,TameP,100,0.0262658840501719,0.00348984260113771,0.0705604401155201,0.0317175484607103,0.0355859488751512,0.0333722443123814 +mite,mite,south,,,Trhypochthonius.tectorum,RoughP,100,0.0178342707097809,0.0017775101296245,0.0538944671894847,0.0201534578604257,0.0236671489469203,0.0257127974472374 +vascular_plant,vascular_plant,north,,,Galium.boreale,WhiteSpruce,100,0.0406364711760466,0.024432400608394,0.0735877772424009,0.0466370647602642,0.0453153927037044,0.0199850438855153 +vascular_plant,vascular_plant,north,,,Galium.boreale,Pine,100,0.0532889916477588,0.0258949204336685,0.103144991015341,0.0500593438765839,0.0606904900176882,0.0324539223864822 +vascular_plant,vascular_plant,north,,,Galium.boreale,Deciduous,100,0.281827119177462,0.176563094293058,0.455420992739487,0.215897634677168,0.295321726585173,0.108474257040571 +vascular_plant,vascular_plant,north,,,Galium.boreale,Mixedwood,100,0.0495083839795879,0.0308905560453585,0.0962910471315652,0.032872236484059,0.0560317598029402,0.0265669759770954 +vascular_plant,vascular_plant,north,,,Galium.boreale,BlackSpruce,100,0.0219900193512547,0.011187818266249,0.0372555628483933,0.022750121589903,0.0234900422896059,0.0114311299039281 +vascular_plant,vascular_plant,north,,,Galium.boreale,TreedFen,100,0.005664753328586,0.00247172514242911,0.010964451557248,0.00488295833356585,0.00646041615864636,0.00395436872493464 +vascular_plant,vascular_plant,north,,,Galium.boreale,TreedSwamp,100,0.121860825285082,0.0494149389786994,0.309520416769837,0.118774832996189,0.150322837952888,0.103749972553239 +vascular_plant,vascular_plant,north,,,Galium.boreale,GraminoidFen,100,0.011078334584939,0.0058753824345125,0.0189644591425603,0.0130058711269843,0.0123120717707632,0.00595945305084021 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyFen,100,0.0161420040455243,0.007763655136263,0.0306998811391024,0.0134413437619274,0.0187387483123099,0.0129064626652876 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbyBog,100,0.00336881423342325,0.00184139211712952,0.00705994111694341,0.00381694456221479,0.00389744016613414,0.00212343860331987 +vascular_plant,vascular_plant,north,,,Galium.boreale,ShrubbySwamp,100,0.0635856948459077,0.0243873484141993,0.131852588109847,0.0601778189466999,0.0757200101955674,0.0518102794230402 +vascular_plant,vascular_plant,north,,,Galium.boreale,Marsh,100,0.0318015503603987,0.014011564829858,0.0727811622372801,0.0248817213967334,0.0384181562188247,0.0249913907062824 +vascular_plant,vascular_plant,north,,,Galium.boreale,Shrub,100,0.0770904543785596,0.0471691708646277,0.143147563044462,0.0509427447460396,0.0872084959078027,0.0365817588364762 +vascular_plant,vascular_plant,north,,,Galium.boreale,Grass,100,0.0302490617883455,0.017889239903115,0.0586843547979908,0.0157402788563787,0.0353995040287846,0.0197144904991473 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruceR,100,0.368381396527085,0.167883603830231,0.581867237074953,0.383065851974248,0.370071127530807,0.180664404429456 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce1,100,0.411270188241308,0.20033163189925,0.665384994946832,0.381159706709511,0.434565159670877,0.175801323352964 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce2,100,0.17284418370329,0.0627069570418277,0.348990690783895,0.134073305928807,0.196526746193483,0.121769059383779 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce3,100,0.17284418370329,0.0627069570418277,0.348990690783895,0.134073305928807,0.196526746193483,0.121769059383779 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCWhiteSpruce4,100,0.17284418370329,0.0627069570418277,0.348990690783895,0.134073305928807,0.196526746193483,0.121769059383779 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPineR,100,0.157938649629151,0.0327771703166428,0.329374909002883,0.1582478760585,0.176469549644906,0.140194393602757 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine1,100,0.118828656696021,0.0534659081441041,0.309800020339729,0.105728116532866,0.163278319499174,0.122013088375482 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine2,100,0.0392039154630525,0.0138740313080983,0.115334818346406,0.034845885680375,0.0561862775437978,0.0457768761778183 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine3,100,0.0392039154630525,0.0138740313080983,0.115334818346406,0.034845885680375,0.0561862775437978,0.0457768761778183 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCPine4,100,0.0392039154630525,0.0138740313080983,0.115334818346406,0.034845885680375,0.0561862775437978,0.0457768761778183 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduousR,100,0.256218409698027,0.106848222409007,0.483232978894399,0.215698096756669,0.274263009783108,0.138854949582254 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous1,100,0.503781633813905,0.300960421196329,0.719639788372486,0.517792427897605,0.513786753797041,0.162148715897719 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous2,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous3,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCDeciduous4,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwoodR,100,0.256218409698027,0.106848222409007,0.483232978894399,0.215698096756669,0.274263009783108,0.138854949582254 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood1,100,0.503781633813905,0.300960421196329,0.719639788372486,0.517792427897605,0.513786753797041,0.162148715897719 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood2,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood3,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,CCMixedwood4,100,0.490094870027293,0.268681744244487,0.701647046579095,0.411079620974547,0.47511300640485,0.165809580087983 +vascular_plant,vascular_plant,north,,,Galium.boreale,EnSeismic,100,0.0447231725291052,0.0154203623448521,0.104562591661785,0.0550597930196374,0.0550842654013337,0.0430936196974975 +vascular_plant,vascular_plant,north,,,Galium.boreale,EnSoftLin,100,0.0331555893632907,0.01313777238049,0.0733341794332837,0.0330658481820695,0.039515903657269,0.0271128571053298 +vascular_plant,vascular_plant,north,,,Galium.boreale,TrSoftLin,100,0.0398760432029926,0.0163413184161205,0.106412543769927,0.0426724289112729,0.0526903960257627,0.0410888528268838 +vascular_plant,vascular_plant,north,,,Galium.boreale,HardLin,100,0.0178076550892007,0.00669694603194619,0.041638177285176,0.0152195497846251,0.021552770565625,0.0144598054664896 +vascular_plant,vascular_plant,north,,,Galium.boreale,UrbInd,100,0.0286098851414283,0.0125235468588679,0.0742154128585255,0.0260231381636217,0.0377054161197193,0.032160568131836 +vascular_plant,vascular_plant,north,,,Galium.boreale,Wellsites,100,0.0255400351602719,0.00988243909792701,0.0575002811529633,0.0190579138992947,0.0310813038514187,0.0240495361468735 +vascular_plant,vascular_plant,north,,,Galium.boreale,Crop,100,0.0145537241631187,0.00628964876391729,0.036160778844838,0.012042036542853,0.0183960438205953,0.0129477133333037 +vascular_plant,vascular_plant,north,,,Galium.boreale,TameP,100,0.0140644483194045,0.00655892471428829,0.0317040214771332,0.0172878421770899,0.0174183759665504,0.0111387524702324 +vascular_plant,vascular_plant,north,,,Galium.boreale,RoughP,100,0.133174223592681,0.0545462644703534,0.264954718526141,0.0947839598426263,0.149718623447008,0.0918819609941682 +vascular_plant,vascular_plant,north,,,Vicia.americana,WhiteSpruce,100,0.00251027900520123,0.00164991085579479,0.00390244851787178,0.00381959988064463,0.00267035625435841,0.000867360843230661 +vascular_plant,vascular_plant,north,,,Vicia.americana,Pine,100,0.0153503434136499,0.00885451117792131,0.0243688426517038,0.0155059259418671,0.0161029179599375,0.00683800906834199 +vascular_plant,vascular_plant,north,,,Vicia.americana,Deciduous,100,0.419421597694074,0.239684247353598,0.621661749028741,0.436765018936612,0.420315754406288,0.13393712157682 +vascular_plant,vascular_plant,north,,,Vicia.americana,Mixedwood,100,0.052294766408359,0.0289500576898682,0.113061214660311,0.0505004500386359,0.0642489874890908,0.0415663699732736 +vascular_plant,vascular_plant,north,,,Vicia.americana,BlackSpruce,100,0.0162418161220206,0.00701829039532333,0.0343383245703967,0.0187255304615284,0.0187207377735035,0.0123667251239954 +vascular_plant,vascular_plant,north,,,Vicia.americana,TreedFen,100,0.00447851051964635,0.00221576931863574,0.00924593035330575,0.00626918066404668,0.00522416083898629,0.00307253956051145 +vascular_plant,vascular_plant,north,,,Vicia.americana,TreedSwamp,100,0.0142871810921381,0.00682070456789427,0.0281074216675821,0.0202149765066307,0.0165420758753645,0.00976372601561956 +vascular_plant,vascular_plant,north,,,Vicia.americana,GraminoidFen,100,0.0108154972227127,0.00650221247056675,0.0227609626838313,0.0149408384704638,0.0128261860978962,0.00684162975997794 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyFen,100,0.0102686331644645,0.00597356020661879,0.0197476447180266,0.0155413131969093,0.0118611298590721,0.00589780139697636 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbyBog,100,0.00185065258005169,0.00124757651084344,0.00331756089844198,0.00288035092196388,0.00214370724128913,0.000968201032575416 +vascular_plant,vascular_plant,north,,,Vicia.americana,ShrubbySwamp,100,0.0129683367589856,0.00525189312975082,0.0327196330178087,0.0195540890683284,0.0172140210778564,0.0162007959376514 +vascular_plant,vascular_plant,north,,,Vicia.americana,Marsh,100,0.0104892145198997,0.00545845392598319,0.0225824067085653,0.0162897049172689,0.0125806927941162,0.00750370867744065 +vascular_plant,vascular_plant,north,,,Vicia.americana,Shrub,100,0.0236114958026734,0.0142677880398034,0.0342623680806641,0.0238622589247824,0.0240888258171648,0.00842173191389099 +vascular_plant,vascular_plant,north,,,Vicia.americana,Grass,100,0.0254031104705107,0.0155866905121358,0.0376537202637608,0.0294286596923736,0.026151444686092,0.0094390107980375 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruceR,100,0.0277264834057184,0.0117727948171068,0.0596145419591051,0.0418211090236362,0.033859347459514,0.0215263901379933 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce1,100,0.0675931558101908,0.0326614224540736,0.185750552436853,0.0594047036921747,0.0908999236601139,0.0620221211056168 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce2,100,0.0627971349416707,0.0315716253405118,0.127946820633424,0.055631413305491,0.0733666112852037,0.0410477647590759 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce3,100,0.0627971349416707,0.0315716253405118,0.127946820633424,0.055631413305491,0.0733666112852037,0.0410477647590759 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCWhiteSpruce4,100,0.0627971349416707,0.0315716253405118,0.127946820633424,0.055631413305491,0.0733666112852037,0.0410477647590759 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPineR,100,0.0122293443257411,0.00440223331662349,0.0353725176067376,0.0235999426201235,0.0167076434920998,0.0124348289525301 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine1,100,0.0193553210963329,0.0101768952522565,0.0448775009109177,0.0169483992172514,0.0252535211260991,0.02103941970595 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine2,100,0.0103218269924744,0.00509199623702222,0.0242735144099207,0.01169621704846,0.0130588247003094,0.00955581893871992 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine3,100,0.0103218269924744,0.00509199623702222,0.0242735144099207,0.01169621704846,0.0130588247003094,0.00955581893871992 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCPine4,100,0.0103218269924744,0.00509199623702222,0.0242735144099207,0.01169621704846,0.0130588247003094,0.00955581893871992 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduousR,100,0.0332579977380115,0.0182659195382321,0.0626831609174158,0.0399505806676464,0.0396369943159418,0.0226662210266941 +vascular_plant,vascular_plant,north,,,Vicia.americana,CCDeciduous1,100,0.181098296853137,0.0863203030724733,0.360407840701453,0.273903518006007,0.202560783588598,0.103156031415569 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+bird,bird,south,,,AMRO,insample_deviance_explained,100,0.20456669751244,0.19886704308408,0.209968346698447,0.188178656802463,0.204169027699141,0.00484022064757973 +bird,bird,south,,,AMRO,insample_rmse,100,0.704055422104146,0.698240883747808,0.709262142555106,0.712606323131588,0.704414393762008,0.00475015990019353 +bird,bird,south,,,AMRO,insample_spearman,100,0.402626815855378,0.397389085779604,0.407740214069718,0.384637823518389,0.40209491543156,0.00464860768740981 +bird,bird,south,,,AMRO,insample_calibration_slope,100,1.2284178654582,1.20538510947961,1.2518762219641,1.23044997339321,1.22657656852759,0.0208765584421352 +bird,bird,south,,,AMRO,insample_prevalence,100,0.25752346479229,0.255659699239778,0.259556057034696,0.256218172635832,0.257669910644742,0.00161159361854837 +bird,bird,south,,,AMRO,insample_n,100,23760,23758,23763,23761,23760.32,1.82507783146612 +bird,bird,south,,,AMRO,oob_auc,100,0.733252794525821,0.731585449944469,0.735292465618472,0.729836682499663,0.733380844233259,0.00139363071838391 +bird,bird,south,,,AMRO,oob_deviance_explained,100,0.162466600679214,0.160491329367784,0.165109019025557,0.156757861298744,0.16270274797029,0.00205766281673827 +bird,bird,south,,,AMRO,oob_rmse,100,0.71440191416034,0.71191824763699,0.71687061072575,0.715479709938808,0.714340905677359,0.00185537584679173 +bird,bird,south,,,AMRO,oob_spearman,100,0.35968907884779,0.357167753963821,0.362786146695851,0.354241476771466,0.359773980563133,0.00215072316465783 +bird,bird,south,,,AMRO,oob_calibration_slope,100,1.07010066075288,1.03433936218138,1.10350639211668,1.10584756707492,1.06879371226934,0.0262633874537082 +bird,bird,south,,,AMRO,oob_prevalence,100,0.26017221379495,0.259454025231392,0.260830833719381,0.260633551457466,0.26012050791978,0.000569461942508158 +bird,bird,south,,,AMRO,oob_n,100,67241,67238,67243,67240,67240.68,1.82507783146612 +bird,bird,south,,,YEWA,insample_auc,100,0.784483544062035,0.776586417047854,0.7881960660183,0.787947644764914,0.783644504485506,0.00461083012927805 +bird,bird,south,,,YEWA,insample_deviance_explained,100,0.334047782635228,0.320933998025156,0.339076547141964,0.331865793831291,0.331988786882638,0.00781636452718194 +bird,bird,south,,,YEWA,insample_rmse,100,0.582259554213727,0.575800935520534,0.588998926367633,0.587695573722515,0.582763366908602,0.00566201674518016 +bird,bird,south,,,YEWA,insample_spearman,100,0.381283627554889,0.370159875592947,0.385576436016817,0.384453738255781,0.379849916777746,0.00603565284928966 +bird,bird,south,,,YEWA,insample_calibration_slope,100,0.964620497501342,0.948355664110041,0.974121401282687,0.953168949085808,0.96206487814589,0.0147267784696778 +bird,bird,south,,,YEWA,insample_prevalence,100,0.172348484848485,0.171041113242132,0.173828864851214,0.171625773326038,0.172377316880205,0.00118884919754683 +bird,bird,south,,,YEWA,insample_n,100,23760,23758,23763,23761,23760.32,1.82507783146612 +bird,bird,south,,,YEWA,oob_auc,100,0.75859090884813,0.754750489308156,0.761457970260799,0.759756451617164,0.758279406260712,0.00263062835898332 +bird,bird,south,,,YEWA,oob_deviance_explained,100,0.263113685866443,0.257764495917321,0.267424903043654,0.267606218266052,0.262727711833365,0.00363274907984787 +bird,bird,south,,,YEWA,oob_rmse,100,0.616426126267209,0.614111738839488,0.619134081672824,0.614673190827697,0.61656291982298,0.00222960842223415 +bird,bird,south,,,YEWA,oob_spearman,100,0.348395130042867,0.343702814786019,0.352232483508196,0.350464716028413,0.348022943932441,0.00342760811803946 +bird,bird,south,,,YEWA,oob_calibration_slope,100,0.896073209032596,0.867281776985515,0.921804669450382,0.903851052419204,0.894186118608259,0.0219679482089084 +bird,bird,south,,,YEWA,oob_prevalence,100,0.175369194390327,0.174846078343892,0.175831105150298,0.175624628197501,0.175359024838626,0.000420107615836888 +bird,bird,south,,,YEWA,oob_n,100,67241,67238,67243,67240,67240.68,1.82507783146612 +bryophyte,bryophyte,north,,,Bryum.All,insample_auc,100,0.860750835101291,0.854346096125665,0.867331697707867,0.770386041257282,0.85895656793192,0.0123148367998489 +bryophyte,bryophyte,north,,,Bryum.All,insample_deviance_explained,100,0.286105233699871,0.274159398858828,0.297056758916846,0.150171305539755,0.28303270037142,0.0192812568333994 +bryophyte,bryophyte,north,,,Bryum.All,insample_rmse,100,0.394595531147658,0.390356424781526,0.398713773416915,0.440271657458748,0.395534211253345,0.00651426862590322 +bryophyte,bryophyte,north,,,Bryum.All,insample_spearman,100,0.613002938998001,0.600978088072884,0.623082539027521,0.458868674189629,0.60906403524693,0.0209872137493265 +bryophyte,bryophyte,north,,,Bryum.All,insample_calibration_slope,100,1.40414695121354,1.37750226446616,1.43600347687194,1.53493777553577,1.40612541223433,0.0292842267692435 +bryophyte,bryophyte,north,,,Bryum.All,insample_prevalence,100,0.399349043162305,0.393690846676296,0.405271234894856,0.400041220115416,0.399694475254376,0.00482485437151544 +bryophyte,bryophyte,north,,,Bryum.All,insample_n,100,3072,3037,3101.1,4852,3089.55,179.568583729522 +bryophyte,bryophyte,north,,,Bryum.All,oob_auc,99,0.653059091044856,0.640987411590984,0.670093231304764,,0.655026955747169,0.0116090833890595 +bryophyte,bryophyte,north,,,Bryum.All,oob_deviance_explained,99,0.0286057230342556,0.0106780243283777,0.0473871955281015,,0.0284186770253805,0.0148548287335231 +bryophyte,bryophyte,north,,,Bryum.All,oob_rmse,99,0.478454601217645,0.472687651926197,0.483481065333659,,0.478281236340462,0.00434702928858173 +bryophyte,bryophyte,north,,,Bryum.All,oob_spearman,99,0.260650588120615,0.237673944093193,0.288891288290437,,0.26311994860128,0.0197212262698666 +bryophyte,bryophyte,north,,,Bryum.All,oob_calibration_slope,99,0.638586207434546,0.575921122117689,0.704052084496017,,0.642518389645565,0.0557147639082828 +bryophyte,bryophyte,north,,,Bryum.All,oob_prevalence,99,0.401248581157775,0.390844052298067,0.411007337376053,,0.40063385096374,0.00831606439643734 +bryophyte,bryophyte,north,,,Bryum.All,oob_n,100,1780,1750.9,1815,0,1762.45,179.568583729522 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_auc,100,0.878585564653745,0.870243978210172,0.88263857869175,0.765269449728448,0.875763764425765,0.0133142052791284 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_deviance_explained,100,0.330473021121297,0.31371576766504,0.340655601892139,0.154994400826678,0.326187752890712,0.0221218979413285 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_rmse,100,0.383873935210623,0.380170460199672,0.38980302353665,0.444072388004376,0.385432503520235,0.00766902272693121 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_spearman,100,0.651364423093466,0.636055527078404,0.658179974223676,0.456256931473654,0.646306252232035,0.0229476452445592 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_calibration_slope,100,1.31042286989922,1.28648958148539,1.3370287626485,1.33142004866925,1.31264156117692,0.0202821588856423 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_prevalence,100,0.441423922595881,0.434027652325691,0.448036090018821,0.441055234954658,0.441321190043275,0.00550036887512568 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,insample_n,100,3065,3034.8,3098.1,4852,3083.68,180.313356872603 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_auc,99,0.706340643181722,0.693601854810055,0.723737814943763,,0.70796988873474,0.0118084163608549 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_deviance_explained,99,0.0815541394769718,0.0596435246412435,0.104103618015747,,0.0818640122321037,0.0184602338788213 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_rmse,99,0.466593059678893,0.459425058602977,0.472831918543652,,0.466321974730625,0.00535568716249071 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_spearman,99,0.35434129368489,0.333037593180691,0.385367228947737,,0.357596650240031,0.0203216115127356 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_calibration_slope,99,0.766066392533162,0.696444229911468,0.834146431447173,,0.767953184201104,0.0533385254290507 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_prevalence,99,0.440387906446092,0.428865082471199,0.453160994868052,,0.440591948010038,0.00954929827120406 +bryophyte,bryophyte,north,,,Ceratodon.purpureus,oob_n,100,1787,1753.9,1817.2,0,1768.32,180.313356872603 +bryophyte,bryophyte,south,,,Bryum.All,insample_auc,100,0.903412834688365,0.881441946155368,0.916666280263654,0.792790433094654,0.899680396377794,0.016947846041035 +bryophyte,bryophyte,south,,,Bryum.All,insample_deviance_explained,100,0.391322989835044,0.335547132813543,0.429175890015421,0.178811163710994,0.384513162713245,0.039556622923155 +bryophyte,bryophyte,south,,,Bryum.All,insample_rmse,100,0.354619888025851,0.34282665972425,0.374035231070847,0.425550790707136,0.357262728245898,0.0133261030946034 +bryophyte,bryophyte,south,,,Bryum.All,insample_spearman,100,0.674768775821245,0.636597003735496,0.69649271609731,0.489841722503616,0.668382913170593,0.0283857393848222 +bryophyte,bryophyte,south,,,Bryum.All,insample_calibration_slope,100,1.26497817453757,1.22900010566727,1.31750544920251,1.46714141245107,1.26965289000259,0.0397440058447065 +bryophyte,bryophyte,south,,,Bryum.All,insample_prevalence,100,0.37019021854078,0.360595240622412,0.379679386889781,0.370562770562771,0.370026059340774,0.00737507386315862 +bryophyte,bryophyte,south,,,Bryum.All,insample_n,100,1461,1441,1483.1,2310,1469.48,86.5891821456149 +bryophyte,bryophyte,south,,,Bryum.All,oob_auc,99,0.717679510877293,0.694351618270539,0.737528013176391,,0.716941529511395,0.0156953434128475 +bryophyte,bryophyte,south,,,Bryum.All,oob_deviance_explained,99,0.0650728636887593,0.0306281290039554,0.105002768572264,,0.0667320748012587,0.0292167461711735 +bryophyte,bryophyte,south,,,Bryum.All,oob_rmse,99,0.458015294985342,0.447955638912244,0.466447415788911,,0.457447746394544,0.00760568393389273 +bryophyte,bryophyte,south,,,Bryum.All,oob_spearman,99,0.363383527651412,0.325104024726652,0.398614048988405,,0.363005319484067,0.0263984675258909 +bryophyte,bryophyte,south,,,Bryum.All,oob_calibration_slope,99,0.688593585630258,0.624828330616893,0.777413739976418,,0.698279547338477,0.0650160610353477 +bryophyte,bryophyte,south,,,Bryum.All,oob_prevalence,99,0.371203599550056,0.355314877874469,0.387708127053306,,0.371529356420389,0.012786200422401 +bryophyte,bryophyte,south,,,Bryum.All,oob_n,100,849,826.9,869,0,840.52,86.5891821456149 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_auc,100,0.930885230595275,0.908254562843243,0.944935736428851,0.888769191549551,0.928185383185136,0.0150545589329677 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_deviance_explained,100,0.462997631793216,0.390699543526778,0.512476511162228,0.342125264548208,0.457281677464603,0.0464100931338642 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_rmse,100,0.300079462020683,0.28440623548817,0.320794634669083,0.337158290865724,0.301994626488104,0.0144081328351644 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_spearman,100,0.637286613356248,0.602591913789686,0.658184545108263,0.575027343164341,0.633291210113568,0.0232240640973378 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_calibration_slope,100,1.21384115038971,1.17526134742352,1.25652222599894,1.28779177380718,1.21658118832855,0.0321839213595873 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_prevalence,100,0.23977643361205,0.230206220419202,0.24915207746165,0.23982683982684,0.239916446255905,0.00713405567006193 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,insample_n,100,1462,1439.9,1485.5,2310,1470.38,86.7389884723826 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_auc,99,0.774025826546835,0.752541041767457,0.790762436072888,,0.772914974814589,0.0151079744984551 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_deviance_explained,99,0.133140004747628,0.0689481421444543,0.167935513286406,,0.123767359771574,0.0369827492184537 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_rmse,99,0.393253791450194,0.383917152034581,0.407137508817809,,0.394499669925445,0.00964593803591031 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_spearman,99,0.404122633381624,0.371003795748782,0.429139347920511,,0.403260860470833,0.0219177529559471 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_calibration_slope,99,0.729716704064096,0.646755011213507,0.849682537437586,,0.739730174013669,0.0785963175321414 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_prevalence,99,0.24,0.22333963288802,0.255865292031658,,0.239661978853052,0.0123710992661133 +bryophyte,bryophyte,south,,,Ceratodon.purpureus,oob_n,100,848,824.5,870.1,0,839.62,86.7389884723826 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_auc,100,0.904778443950245,0.899496634385687,0.909510291780191,0.835898082239764,0.903859149330388,0.00800863478115937 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_deviance_explained,100,0.404834463608788,0.394619630842205,0.417912629268786,0.268343143859901,0.403454133811611,0.0167527922015474 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_rmse,100,0.356791427648164,0.352547820614698,0.360579348393022,0.404727052714958,0.357202107429536,0.00589334181381166 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_spearman,100,0.681875825821922,0.672688201173356,0.690086657320471,0.566138044181707,0.680786957451843,0.013663966916657 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_calibration_slope,100,1.19745067455464,1.17457014578556,1.21562263670227,1.17381324555617,1.19643392953246,0.0151644853980776 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_prevalence,100,0.384437187559081,0.380547590781089,0.390534077268186,0.384787472035794,0.385176413599833,0.00409185516764567 +lichen,lichen,north,,,Cladonia.chlorophaea,insample_n,100,3676.5,3643.5,3708.1,5811,3697.98,214.895651445303 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_auc,99,0.788813726628731,0.778832055731388,0.796353281711309,,0.788161502145912,0.00767719562492634 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_deviance_explained,99,0.195118593629834,0.173361400580534,0.214190354122477,,0.194883163894391,0.0160909190473989 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_rmse,99,0.427061513180184,0.421663000905147,0.432947464823685,,0.427188711429445,0.00444939796285324 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_spearman,99,0.486325885353479,0.470890089790622,0.49936570553779,,0.485467802684752,0.0130677526199981 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_calibration_slope,99,0.86694487019919,0.8252378220685,0.909673840706794,,0.866158981478038,0.034764248464668 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_prevalence,99,0.38539741219963,0.374872643000928,0.392180977534085,,0.384118981262911,0.00709581761955854 +lichen,lichen,north,,,Cladonia.chlorophaea,oob_n,100,2134.5,2102.9,2167.5,0,2113.02,214.895651445303 +lichen,lichen,north,,,Physcia.adscendens,insample_auc,100,0.941251033590853,0.937805710565769,0.944797239626203,0.896074560283454,0.940475414977836,0.00589503067582772 +lichen,lichen,north,,,Physcia.adscendens,insample_deviance_explained,100,0.532839016223246,0.519287823549474,0.542849102899646,0.402358655211678,0.530479909045203,0.0179422598567502 +lichen,lichen,north,,,Physcia.adscendens,insample_rmse,100,0.305694233142747,0.301764470580042,0.310557503082561,0.353013016928338,0.306633541293184,0.00654200479166593 +lichen,lichen,north,,,Physcia.adscendens,insample_spearman,100,0.743427773472439,0.737750013840861,0.74963412622599,0.667337063054066,0.742191527950781,0.0102610559801421 +lichen,lichen,north,,,Physcia.adscendens,insample_calibration_slope,100,1.11944550189643,1.10918142638201,1.13244624057551,1.09325260996237,1.11953879175005,0.00890694689875838 +lichen,lichen,north,,,Physcia.adscendens,insample_prevalence,100,0.384489533269728,0.377838704868109,0.390009815932809,0.384099122354156,0.384317673219895,0.0047397879995898 +lichen,lichen,north,,,Physcia.adscendens,insample_n,100,3672,3638.7,3709,5811,3693.16,215.702035411834 +lichen,lichen,north,,,Physcia.adscendens,oob_auc,99,0.866210491241432,0.857701272077384,0.873177550965357,,0.865993876222527,0.00606165991254939 +lichen,lichen,north,,,Physcia.adscendens,oob_deviance_explained,99,0.329524042152685,0.306686057283094,0.349136640586121,,0.328851125998104,0.0168388772972718 +lichen,lichen,north,,,Physcia.adscendens,oob_rmse,99,0.376273020576028,0.369855525906688,0.383560725247639,,0.376679721084689,0.00509138905111 +lichen,lichen,north,,,Physcia.adscendens,oob_spearman,99,0.616057232688368,0.602818402991963,0.629204629777753,,0.616458653505332,0.0108526020913429 +lichen,lichen,north,,,Physcia.adscendens,oob_calibration_slope,99,0.927256634257089,0.896327919335921,0.958852724948581,,0.92738790210228,0.0246798151056494 +lichen,lichen,north,,,Physcia.adscendens,oob_prevalence,99,0.383356708742403,0.373863819973773,0.394833611223034,,0.383735741049292,0.00819358771364491 +lichen,lichen,north,,,Physcia.adscendens,oob_n,100,2139,2102,2172.3,0,2117.84,215.702035411834 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_auc,100,0.969196319637298,0.955930418126417,0.979423567714196,0.934063944264331,0.967896472490609,0.0117668888956329 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_deviance_explained,100,0.568503847977498,0.499712419786973,0.633148989237857,0.406902937508697,0.564509317613325,0.0581473689502527 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_rmse,100,0.199091243663268,0.182618639861455,0.215727457694121,0.235975729845345,0.200011490851093,0.0138445374475412 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_spearman,100,0.471267391841209,0.451071245586496,0.486521754969465,0.436551106027585,0.470041014155934,0.0155455994162628 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_calibration_slope,100,1.22052295159613,1.17000538961232,1.28879890610079,1.33649314585924,1.22585563751965,0.0454221056571096 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_prevalence,100,0.093062874358488,0.0871251477911935,0.0985096364127046,0.092924126172208,0.0927572998597921,0.00440698461079555 +lichen,lichen,south,,,Cladonia.chlorophaea,insample_n,100,1483.5,1457,1509.1,2346,1491.36,88.3595181315768 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_auc,99,0.850455181467982,0.827851200478883,0.872009630142455,,0.849290772592792,0.0176202351044425 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_deviance_explained,99,0.177141778658554,0.112426803906516,0.242332711587698,,0.176825289298818,0.0542828860143858 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_rmse,99,0.272912826918925,0.260111227874521,0.286609793364363,,0.273703472026061,0.0107504182722404 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_spearman,99,0.351484217566068,0.324737768491444,0.378828084024038,,0.351363625820997,0.0215284449602079 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_calibration_slope,99,0.693795773116624,0.564610196123408,0.834541872601329,,0.698799078016506,0.103604829556656 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_prevalence,99,0.0926553672316384,0.0833333333333333,0.102941033138401,,0.0932003095021628,0.00766332811400026 +lichen,lichen,south,,,Cladonia.chlorophaea,oob_n,100,862.5,836.9,889,0,854.64,88.3595181315768 +lichen,lichen,south,,,Physcia.adscendens,insample_auc,100,0.972952382815757,0.959036646672365,0.980260656368501,0.949810964083176,0.970930631155549,0.00892824434808262 +lichen,lichen,south,,,Physcia.adscendens,insample_deviance_explained,100,0.638864781902315,0.578139840191437,0.687005947057947,0.534078102964625,0.635800740871211,0.0438935609997689 +lichen,lichen,south,,,Physcia.adscendens,insample_rmse,100,0.232389096585956,0.215979198605,0.254276512015419,0.269598106245282,0.234324769689114,0.0152032181787301 +lichen,lichen,south,,,Physcia.adscendens,insample_spearman,100,0.672640779683733,0.650260746085353,0.687408888675138,0.640882056423092,0.669599952033417,0.0154958746138815 +lichen,lichen,south,,,Physcia.adscendens,insample_calibration_slope,100,1.1417232240648,1.11492568151879,1.17195640445399,1.17634966452876,1.14285837368768,0.0212582928893483 +lichen,lichen,south,,,Physcia.adscendens,insample_prevalence,100,0.214722124199446,0.205436679722394,0.223097894761383,0.215686274509804,0.214581356605682,0.00686172110100964 +lichen,lichen,south,,,Physcia.adscendens,insample_n,100,1480.5,1463,1508.1,2346,1490.81,88.2081668955359 +lichen,lichen,south,,,Physcia.adscendens,oob_auc,99,0.877215865751335,0.859095066010743,0.89383388072601,,0.877163563525782,0.0126030403712817 +lichen,lichen,south,,,Physcia.adscendens,oob_deviance_explained,99,0.31798495165514,0.272217011496732,0.377637242480393,,0.317623423220654,0.042472425212529 +lichen,lichen,south,,,Physcia.adscendens,oob_rmse,99,0.331026110204424,0.316661855214941,0.344327812642802,,0.331446363488847,0.0103290758466635 +lichen,lichen,south,,,Physcia.adscendens,oob_spearman,99,0.537653006293554,0.513197106025736,0.567204718190065,,0.538705823751013,0.0206332320221482 +lichen,lichen,south,,,Physcia.adscendens,oob_calibration_slope,99,0.856632122894682,0.79387373141238,0.95608088676043,,0.871542450756956,0.0618693210405731 +lichen,lichen,south,,,Physcia.adscendens,oob_prevalence,99,0.217582417582418,0.203154716242863,0.232991265333397,,0.217536066561435,0.011825901143924 +lichen,lichen,south,,,Physcia.adscendens,oob_n,100,865.5,837.9,883,0,855.19,88.2081668955359 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_auc,100,0.911774717717531,0.890603784741847,0.927905153977473,0.868976601251561,0.90961059273532,0.0146197526011226 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_deviance_explained,100,0.474477246728944,0.419994080349897,0.516989619079518,0.367300741000527,0.469117563365226,0.0389593833861448 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_rmse,100,0.279343654656081,0.269443045028467,0.294553610700961,0.306532346072908,0.281061988003962,0.0100137276988549 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_spearman,100,0.591324236419026,0.561315387896344,0.613102922177592,0.528970499717187,0.588160563888286,0.0215531068545048 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_calibration_slope,100,1.09584680754463,1.06329748458638,1.13267074684617,1.09094115862962,1.09729557424834,0.028132855118615 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_prevalence,100,0.225366262673778,0.220070866141732,0.230634088644114,0.22526523562793,0.225265109443517,0.00465839538219897 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,insample_n,100,2564.5,2538.9,2588.1,4053,2577.75,150.218989976284 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_auc,99,0.821428385626662,0.802453887813542,0.83759300742141,,0.820639069047807,0.0127217258835261 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_deviance_explained,99,0.254496875668112,0.199142462280306,0.297576340283418,,0.251478771959065,0.0367728712717857 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_rmse,99,0.330438289750014,0.321887940902648,0.341257878296469,,0.330901164123889,0.00750706123660353 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_spearman,99,0.45980905376975,0.433861396318411,0.480688521171462,,0.458772946214259,0.0183544780837477 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_calibration_slope,99,0.840462535371227,0.772163372995721,0.938048003504367,,0.851584086970899,0.0684112644866059 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_prevalence,99,0.224915824915825,0.215935838563886,0.234336783397599,,0.225278900992558,0.00808238984604556 +mammal,mammal_summer,north,summer,hurdle,Coyote_Summer,oob_n,100,1488.5,1464.9,1514.1,0,1475.25,150.218989976284 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_auc,100,0.820425794306634,0.78552786524354,0.838255869011219,0.668807488521141,0.815338176251575,0.0250504248641488 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_deviance_explained,100,0.2489545966202,0.194231589093032,0.277960151805884,0.0667954919785909,0.243397568063171,0.036488665292489 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_rmse,100,0.383036022965412,0.374903698887327,0.398787595789181,0.431921753845721,0.384692889993193,0.0102162881067399 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_spearman,100,0.510598980881487,0.453331076010541,0.53754273995832,0.25845081116616,0.500384062642609,0.0415632436869877 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_calibration_slope,100,1.29961967349354,1.23370797458472,1.38182332333617,1.44751799028067,1.30325536310967,0.060096131841816 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_prevalence,100,0.321224265570394,0.314927013046706,0.329608505982353,0.321243523316062,0.321726728813055,0.00570583516475525 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,insample_n,100,2562.5,2537.8,2585.2,4053,2576.41,150.50897453023 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_auc,99,0.634254195541455,0.619707342565451,0.650298241911308,,0.635085440649985,0.0131126997438952 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_deviance_explained,99,0.0135637309229262,-0.0141180129709603,0.0386738640865521,,0.0132436761322501,0.021674664198592 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_rmse,99,0.443743668723333,0.437597343604364,0.449722664495419,,0.443383893544107,0.00504550893111906 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_spearman,99,0.204084240207481,0.179007895797705,0.23055508991377,,0.206417711439697,0.0213572459951488 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_calibration_slope,99,0.568533401647722,0.483536459730426,0.673884687361195,,0.576320140640839,0.0771215658372557 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_prevalence,99,0.321309285237141,0.306674120479106,0.332295711996362,,0.320409946399226,0.00981841561898746 +mammal,mammal_summer,north,summer,hurdle,Moose_Summer,oob_n,100,1490.5,1467.8,1515.2,0,1476.59,150.50897453023 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_auc,100,0.894533494388052,0.801315301305873,0.929200204737729,0.736208619664332,0.879840598846594,0.0507794776103749 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_deviance_explained,100,0.300487787295475,0.151654232115592,0.398513132823051,0.0743048901222631,0.287604077605592,0.0924587185251642 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_rmse,100,0.332396171731139,0.304010451423247,0.372804638499492,0.405302941526172,0.336446194942974,0.0298707779494931 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_spearman,100,0.570265075135495,0.440313595908013,0.651388236319208,0.331591042359753,0.55411219231966,0.0813618518905458 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_calibration_slope,100,1.37183403657582,1.30893971574758,1.51892940616619,2.05704525126745,1.42502306115702,0.196729103359121 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_prevalence,100,0.690265486725664,0.677858804026463,0.705124366147928,0.691079812206573,0.69073390484255,0.0105889276646668 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,insample_n,100,675,663,685.2,1065,678.22,40.0901962876691 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_auc,99,0.596972426417178,0.567881288584832,0.624637263170821,,0.595962769717672,0.0238764812027253 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_deviance_explained,99,-0.0697625710722276,-0.182670008415495,0.00635074373350757,,-0.0811849503658602,0.0734227229062604 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_rmse,99,0.445374413409278,0.426161691429689,0.463856607484013,,0.44495261848586,0.0129116091714645 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_spearman,99,0.126416442567202,0.0696340225691521,0.169871017129625,,0.124483219813603,0.0391412414944334 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_calibration_slope,99,0.364892415187113,0.221618178227047,0.566513944765117,,0.379211839372363,0.153569301038242 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_prevalence,99,0.69250645994832,0.665628476084538,0.714359162688211,,0.691755730213825,0.0182750869466842 +mammal,mammal_summer,south,summer,hurdle,Coyote_Summer,oob_n,100,390,379.8,402,0,386.78,40.0901962876691 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_auc,100,0.97151925299944,0.939459944085013,0.98764132576405,0.936824600234356,0.967429058052971,0.0181502921514196 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_deviance_explained,100,0.659021524175874,0.528224039301437,0.7504892430478,0.514510257414488,0.651285091548835,0.0807730704268706 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_rmse,100,0.229750518910537,0.191221063863993,0.264824479192085,0.269467710928516,0.22774877241607,0.0273364409979995 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_spearman,100,0.628515506345372,0.581169007566879,0.651753511233768,0.581351058648935,0.621748949735446,0.0269424589421401 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_calibration_slope,100,1.23713218210583,1.17596897608925,1.37924226129202,1.30017294621111,1.25857130786737,0.07571436792035 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_prevalence,100,0.182355333743735,0.168834754036547,0.195212578714749,0.182159624413146,0.182097557830322,0.00986022769722504 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,insample_n,100,674,660.9,691.1,1065,678.58,40.7453734127625 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_auc,99,0.805412191379551,0.768099146066396,0.837562170724838,,0.804017448502231,0.025943871830539 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_deviance_explained,99,0.172205566443671,0.0447014545043693,0.273624247486093,,0.160548642849082,0.10026101048484 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_rmse,99,0.337467499764299,0.323361324966895,0.355793234921183,,0.339069060402783,0.0152697937685546 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_spearman,99,0.406094708270621,0.353068783329426,0.449396795640829,,0.404848644049951,0.03683291475114 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_calibration_slope,99,0.769305796320821,0.647785267299317,0.936118407292539,,0.786567375689633,0.120207690859448 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_prevalence,99,0.181578947368421,0.160028119078184,0.205617057719676,,0.182250919667934,0.0169141196650609 +mammal,mammal_summer,south,summer,hurdle,Moose_Summer,oob_n,100,391,373.9,404.1,0,386.42,40.7453734127625 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_auc,100,0.925198533678592,0.902133756087115,0.939514625878721,0.877681659131004,0.922305244389882,0.0154522814398905 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_deviance_explained,100,0.500648256297997,0.436643205190307,0.550310056845031,0.373322015940387,0.496197861651407,0.0476833537159412 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_rmse,100,0.256992856843048,0.244097753240389,0.273394367580414,0.28590578738551,0.258533412146019,0.0118609499269263 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_spearman,100,0.586986295467602,0.555100303241885,0.609028528770158,0.517677298316643,0.583295490508839,0.0232203863839146 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_calibration_slope,100,1.10438030862046,1.05931807903334,1.1586320516316,1.06149717888556,1.1064107351618,0.0389720348994676 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_prevalence,100,0.201888432073211,0.197431539212855,0.208159731764965,0.201356917858008,0.202485373586251,0.0045069479986566 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,insample_n,100,2609,2585,2637.1,4127,2624.81,152.9496976133 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_auc,99,0.843067321751097,0.828198896523552,0.856934416533408,,0.842942191796387,0.0109590024861483 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_deviance_explained,99,0.283312529531377,0.234276149778729,0.322216090977644,,0.280958277693207,0.0334609810121195 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_rmse,99,0.304639322732983,0.293605161930096,0.314753477745454,,0.304089831755496,0.00808113395661579 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_spearman,99,0.468190341946313,0.448569338529668,0.48697792894466,,0.467449375825245,0.0146063789831663 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_calibration_slope,99,0.840621292750524,0.757047001806974,0.933652682824847,,0.843358894002471,0.0692567000459022 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_prevalence,99,0.200259235255995,0.189775542999326,0.208169005020511,,0.199411477918602,0.00778894989308338 +mammal,mammal_winter,north,winter,hurdle,Coyote_Winter,oob_n,100,1518,1489.9,1542,0,1502.19,152.9496976133 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_auc,100,0.87763912752661,0.840221675336566,0.898608874728016,0.809771013388151,0.874269795829627,0.0234958828990025 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_deviance_explained,100,0.362135114661574,0.29027425757547,0.414545970706447,0.232011775387871,0.356821468311309,0.0493654973527271 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_rmse,100,0.284036125807797,0.272088008026609,0.297503799901774,0.307576413390527,0.284433430560904,0.01019915733954 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_spearman,100,0.467772991934655,0.423036581809657,0.493806435155137,0.3833151284687,0.462114568682383,0.0290835432514804 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_calibration_slope,100,1.27273241155849,1.22274193285368,1.34440154637467,1.34372982749975,1.27972427699523,0.0528727096338532 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_prevalence,100,0.149990410433449,0.143887902486318,0.155025771607528,0.148776350860189,0.149556674913188,0.00428400474177712 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,insample_n,100,2610,2586.7,2642.1,4127,2627.97,153.021715960695 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_auc,99,0.695958651534868,0.672621681803972,0.716874273868958,,0.695501784288885,0.0164288157104579 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_deviance_explained,99,0.0645506962569552,0.014682441144234,0.098736320768384,,0.0604805132849499,0.0350085053782696 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_rmse,99,0.333661180485603,0.325852518730561,0.342841940028767,,0.333701697578064,0.00744283501315964 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_spearman,99,0.242069925558972,0.214932025914692,0.267367964480576,,0.242578715922122,0.0208183758265192 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_calibration_slope,99,0.61981584799944,0.502773659514253,0.772712761214176,,0.630655950052366,0.113008709577489 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_prevalence,99,0.146603900470746,0.138208405767461,0.157249189724539,,0.147431774997664,0.00743974221077868 +mammal,mammal_winter,north,winter,hurdle,Moose_Winter,oob_n,100,1517,1484.9,1540.3,0,1499.03,153.021715960695 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_auc,100,0.901361974092304,0.845789801751495,0.92711845599861,0.755383862639498,0.892882667502942,0.0345038440285371 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_deviance_explained,100,0.375266846290075,0.24303817941246,0.442573971021155,0.114500866431879,0.360445744294166,0.0788727879988768 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_rmse,100,0.311308248631551,0.288787131280615,0.351306858569106,0.39109950084017,0.316273744964095,0.0244141898332567 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_spearman,100,0.677578220117135,0.564357877299532,0.728360965337539,0.400978098349965,0.659597748364795,0.0659415592655855 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_calibration_slope,100,1.27684840745666,1.20833341405297,1.37908020262761,1.55965933436895,1.28556599612963,0.0699769030963394 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_prevalence,100,0.603312544835565,0.587842923920052,0.618115052537349,0.604735883424408,0.603077490652041,0.012677090847138 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,insample_n,100,695,682,708.1,1098,699.19,41.3864992869936 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_auc,99,0.667270816916207,0.641180766588286,0.699138996057074,,0.669806093106235,0.0232725537251214 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_deviance_explained,99,-0.027263706775954,-0.128253407663235,0.0425807553781052,,-0.0396997037121253,0.0777088529926294 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_rmse,99,0.424351118128312,0.407424178696317,0.438720205330233,,0.423682846819838,0.011734916490837 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_spearman,99,0.267182101272392,0.218119683356443,0.315242089892095,,0.266291379294965,0.0402891398801104 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_calibration_slope,99,0.529723903027709,0.423052936740596,0.712456624157512,,0.553909984926851,0.121108673398382 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_prevalence,99,0.6075,0.580323143750253,0.635349582154713,,0.607575707802926,0.0220264746278348 +mammal,mammal_winter,south,winter,hurdle,Coyote_Winter,oob_n,100,403,389.9,416,0,398.81,41.3864992869936 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_auc,100,0.967885505507319,0.921538103327448,0.988354195664501,0.925009356287425,0.962615081704256,0.0251216812266664 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_deviance_explained,100,0.636773122912478,0.44395713587034,0.773599488548877,0.450534136207375,0.62894669627842,0.12173803121732 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_rmse,100,0.159774250134059,0.124675721373994,0.195866016966557,0.196086545215843,0.159231653058844,0.0255299793717917 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_spearman,100,0.451337904895187,0.419574598453514,0.484889949251536,0.416178543501863,0.45112730809635,0.0277640009248088 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_calibration_slope,100,1.29524426914348,1.13121917047016,1.59132906498503,1.4868566766033,1.33878598244062,0.226165819616788 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_prevalence,100,0.0873239436619718,0.0790283819028552,0.0939931596468854,0.0874316939890711,0.0868006891304234,0.00618273855118738 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,insample_n,100,696,681,709.1,1098,699.13,41.7903993130895 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_auc,99,0.800576860578486,0.762828295311803,0.834845006730435,,0.800558633684272,0.0285979666927487 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_deviance_explained,99,0.121548998759858,-0.0248428299299088,0.213404695115249,,0.0995088005867491,0.11501694104136 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_rmse,99,0.237309862058593,0.216361617118551,0.259132712398143,,0.236521168795958,0.0153201724100525 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_spearman,99,0.295028586290827,0.256377921928257,0.332331691190773,,0.294497802082868,0.029911018553896 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_calibration_slope,99,0.530361000817909,0.362529351031964,0.853189249553992,,0.585911352760746,0.232671761848022 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_prevalence,99,0.0876288659793814,0.0760837438423646,0.101576468326444,,0.0885136759760043,0.0105262059033636 +mammal,mammal_winter,south,winter,hurdle,Moose_Winter,oob_n,100,402,388.9,417,0,398.87,41.7903993130895 +mite,mite,north,,,Ceratozetes.gracilis,insample_auc,100,0.909327739788385,0.898295798005266,0.914891958448598,0.879196801481044,0.907043889611802,0.00870200973088782 +mite,mite,north,,,Ceratozetes.gracilis,insample_deviance_explained,100,0.403771575250676,0.378370164138707,0.41547874451647,0.329917728855628,0.398786646954949,0.0210171853534378 +mite,mite,north,,,Ceratozetes.gracilis,insample_rmse,100,0.307130118009922,0.302480745731959,0.315101921922439,0.327478225349051,0.30825637701875,0.00624148273954997 +mite,mite,north,,,Ceratozetes.gracilis,insample_spearman,100,0.575470708536924,0.559958774382645,0.584240912133556,0.533499852838133,0.572450469673348,0.0129715681822604 +mite,mite,north,,,Ceratozetes.gracilis,insample_calibration_slope,100,1.18351990232526,1.16149143897715,1.20118806530397,1.18613386986737,1.18251681170071,0.0168735573918492 +mite,mite,north,,,Ceratozetes.gracilis,insample_prevalence,100,0.208199871528185,0.202330059472997,0.21373147884126,0.208369812642269,0.208198118294499,0.00445679417236687 +mite,mite,north,,,Ceratozetes.gracilis,insample_n,100,3611.5,3576.4,3648.1,5711,3631.96,212.045922222789 +mite,mite,north,,,Ceratozetes.gracilis,oob_auc,99,0.806131933136721,0.792623601619346,0.818220976898695,,0.806295402611114,0.00992054611555048 +mite,mite,north,,,Ceratozetes.gracilis,oob_deviance_explained,99,0.19377503442638,0.166046170408365,0.21570093333694,,0.191754787703825,0.0204648567289581 +mite,mite,north,,,Ceratozetes.gracilis,oob_rmse,99,0.360097966110522,0.354444333495806,0.368876391488214,,0.361155909102041,0.00571160628568465 +mite,mite,north,,,Ceratozetes.gracilis,oob_spearman,99,0.429809828012529,0.41333851426135,0.451946649028186,,0.431044101221282,0.0153357199541496 +mite,mite,north,,,Ceratozetes.gracilis,oob_calibration_slope,99,0.864655306190071,0.798886176866742,0.927349471033689,,0.861876012921052,0.0500309998693346 +mite,mite,north,,,Ceratozetes.gracilis,oob_prevalence,99,0.208786017949929,0.199496646948345,0.218887953819956,,0.208656017476228,0.00767785572051809 +mite,mite,north,,,Ceratozetes.gracilis,oob_n,100,2099.5,2062.9,2134.6,0,2079.04,212.045922222789 +mite,mite,north,,,Trhypochthonius.tectorum,insample_auc,100,0.863673934445079,0.816266771038265,0.886573144002259,0.742294572159045,0.857850162128431,0.0312048803029742 +mite,mite,north,,,Trhypochthonius.tectorum,insample_deviance_explained,100,0.264201554489884,0.18449031455167,0.305535374088773,0.101139121714597,0.257317710970107,0.0485143589804375 +mite,mite,north,,,Trhypochthonius.tectorum,insample_rmse,100,0.25825527801336,0.249664846441306,0.271099586159296,0.282703023024446,0.259292387504661,0.00860616155016088 +mite,mite,north,,,Trhypochthonius.tectorum,insample_spearman,100,0.369573565824735,0.320922304599559,0.392939240766442,0.246806765495324,0.363906699826072,0.0315451643889571 +mite,mite,north,,,Trhypochthonius.tectorum,insample_calibration_slope,100,1.38664524960245,1.32302316707819,1.46204500508715,1.41475626215778,1.39030566776818,0.0589222508627874 +mite,mite,north,,,Trhypochthonius.tectorum,insample_prevalence,100,0.0955235096257067,0.0915774802199236,0.0988495023046604,0.0956049728593941,0.0953138578226632,0.00288206269115545 +mite,mite,north,,,Trhypochthonius.tectorum,insample_n,100,3611,3575.8,3647.3,5711,3631.94,211.752896775769 +mite,mite,north,,,Trhypochthonius.tectorum,oob_auc,99,0.667527292447714,0.644572094782193,0.686064813342124,,0.665184229755438,0.0172640323824809 +mite,mite,north,,,Trhypochthonius.tectorum,oob_deviance_explained,99,0.0167338542659414,-0.0182323388253784,0.0447468789304627,,0.0144500399800461,0.0256341992322116 +mite,mite,north,,,Trhypochthonius.tectorum,oob_rmse,99,0.292436458401399,0.284015690402029,0.301405099244964,,0.292179710928398,0.00671035110935829 +mite,mite,north,,,Trhypochthonius.tectorum,oob_spearman,99,0.17073333162517,0.147172233554151,0.18935072448227,,0.16858099776949,0.0179070285704446 +mite,mite,north,,,Trhypochthonius.tectorum,oob_calibration_slope,99,0.57826399932546,0.470655828974985,0.726812030743792,,0.595569629739231,0.110595200177801 +mite,mite,north,,,Trhypochthonius.tectorum,oob_prevalence,99,0.095769409576941,0.0898898158460644,0.102527927842943,,0.096111042002143,0.00496473000095631 +mite,mite,north,,,Trhypochthonius.tectorum,oob_n,100,2100,2063.7,2135.2,0,2079.06,211.752896775769 +mite,mite,south,,,Ceratozetes.gracilis,insample_auc,100,0.986765004572361,0.974180479038864,0.99287302427454,0.959411982871978,0.984615823577687,0.00886756408227993 +mite,mite,south,,,Ceratozetes.gracilis,insample_deviance_explained,100,0.70218570643152,0.617392855395126,0.761932212349389,0.529264846155788,0.693146049022954,0.0631387865670042 +mite,mite,south,,,Ceratozetes.gracilis,insample_rmse,100,0.132245909332834,0.118133670085524,0.149958312593657,0.166987484618412,0.133820478163648,0.0135687068098702 +mite,mite,south,,,Ceratozetes.gracilis,insample_spearman,100,0.386069172482797,0.370081037795608,0.400683758501307,0.366804257536114,0.385397621980831,0.0133559181047898 +mite,mite,south,,,Ceratozetes.gracilis,insample_calibration_slope,100,1.15997936993964,1.10002171764128,1.23789070088429,1.24357646470276,1.16517360788634,0.0527935431045261 +mite,mite,south,,,Ceratozetes.gracilis,insample_prevalence,100,0.0560369998468874,0.0512751399543853,0.0605680889804702,0.0562843842573,0.0558342783814166,0.00341063730227376 +mite,mite,south,,,Ceratozetes.gracilis,insample_n,100,1494,1472,1519,2363,1504.67,88.4284856293891 +mite,mite,south,,,Ceratozetes.gracilis,oob_auc,99,0.902682610058668,0.874854560260005,0.928502701996783,,0.901844532414924,0.0216361440724748 +mite,mite,south,,,Ceratozetes.gracilis,oob_deviance_explained,99,0.347827376587171,0.236810638371402,0.411108738067346,,0.330780195224121,0.0753392761473243 +mite,mite,south,,,Ceratozetes.gracilis,oob_rmse,99,0.192380932993314,0.179108653407005,0.2051160748126,,0.192202393211148,0.0110292959603335 +mite,mite,south,,,Ceratozetes.gracilis,oob_spearman,99,0.326342891849055,0.298736626366107,0.349349865319114,,0.32245131905129,0.0212659251249868 +mite,mite,south,,,Ceratozetes.gracilis,oob_calibration_slope,99,0.87674650317474,0.743359812931304,1.06941952313602,,0.888429300017967,0.139283918897388 +mite,mite,south,,,Ceratozetes.gracilis,oob_prevalence,99,0.0567536889897843,0.0492060040243461,0.0647286476351338,,0.0570889464388298,0.00591758129066131 +mite,mite,south,,,Ceratozetes.gracilis,oob_n,100,869,844,891,0,858.33,88.4284856293891 +mite,mite,south,,,Trhypochthonius.tectorum,insample_auc,100,0.949232278207763,0.914781865354271,0.965101173431294,0.914916030391233,0.942540831326144,0.0238035871844828 +mite,mite,south,,,Trhypochthonius.tectorum,insample_deviance_explained,100,0.464433592868204,0.364927286746816,0.54121564082682,0.352939682757835,0.453087456682336,0.0706442151638304 +mite,mite,south,,,Trhypochthonius.tectorum,insample_rmse,100,0.20977523624945,0.197565009869838,0.232064554538718,0.231947697035794,0.213269400975798,0.013596785738332 +mite,mite,south,,,Trhypochthonius.tectorum,insample_spearman,100,0.427913317959974,0.394697403417868,0.449704298638125,0.397329229215489,0.423499692816767,0.0240401833959736 +mite,mite,south,,,Trhypochthonius.tectorum,insample_calibration_slope,100,1.2794969398515,1.20026441739418,1.37665322765741,1.40288536179909,1.28867046361471,0.0892543559054016 +mite,mite,south,,,Trhypochthonius.tectorum,insample_prevalence,100,0.0834614879480407,0.0777956447270506,0.0898914722165834,0.0833685992382565,0.0833494515789424,0.00446413642909666 +mite,mite,south,,,Trhypochthonius.tectorum,insample_n,100,1491,1464.9,1513.1,2363,1499.18,89.0711190141016 +mite,mite,south,,,Trhypochthonius.tectorum,oob_auc,99,0.751542904290429,0.713820207039337,0.777598264291814,,0.746917263060253,0.0265881332146051 +mite,mite,south,,,Trhypochthonius.tectorum,oob_deviance_explained,99,0.0545443409622509,-0.018407249101713,0.113699194950318,,0.0497906481589603,0.0554967165535712 +mite,mite,south,,,Trhypochthonius.tectorum,oob_rmse,99,0.271068722113407,0.257522099366599,0.281853501799364,,0.270325742252726,0.0116866509251221 +mite,mite,south,,,Trhypochthonius.tectorum,oob_spearman,99,0.237422449015688,0.201959315429382,0.266730667826291,,0.235888080751441,0.0256377279590639 +mite,mite,south,,,Trhypochthonius.tectorum,oob_calibration_slope,99,0.594946821442774,0.468356154537902,0.803379342029423,,0.62060412264267,0.13823362102148 +mite,mite,south,,,Trhypochthonius.tectorum,oob_prevalence,99,0.0830489192263936,0.0720677621944575,0.0927861264477562,,0.0833571385533332,0.00771043845051548 +mite,mite,south,,,Trhypochthonius.tectorum,oob_n,100,872,849.9,898.1,0,863.82,89.0711190141016 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_auc,100,0.939760773416995,0.93652687286732,0.94293632215169,0.931214977657458,0.939605314734249,0.00271199422847415 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_deviance_explained,100,0.527149493070159,0.51493896598837,0.535729597940362,0.496002555058527,0.525563786236342,0.00930049245032951 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_rmse,100,0.310590753942128,0.306360061447658,0.315096782032049,0.322504202857685,0.310851415529104,0.00366007429305407 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_spearman,100,0.751326801954827,0.745384218587837,0.756337345440111,0.736834310219465,0.750959884550424,0.00484970169512799 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_calibration_slope,100,1.13204608303089,1.12250577545758,1.14267682308411,1.13943602876807,1.13255445197247,0.00802530530246625 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_prevalence,100,0.417040220010148,0.411257497538122,0.423685039429209,0.418242653476869,0.417566474780968,0.0050643333322286 +vascular_plant,vascular_plant,north,,,Galium.boreale,insample_n,100,4347,4323.8,4387.3,6874,4375.74,253.599884491577 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_auc,99,0.872524642455618,0.863428912922734,0.881930909430859,,0.87258376603153,0.00719941198916777 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_deviance_explained,99,0.348233168829294,0.325385072062935,0.371832192153539,,0.348644565616112,0.0189748501829749 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_rmse,99,0.375136834692228,0.368534023040528,0.38235165758621,,0.375393601457564,0.00599633650549551 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_spearman,99,0.637036018962252,0.620691530058306,0.65283359709593,,0.636794765109797,0.0125510787206098 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_calibration_slope,99,0.958133646473041,0.92692228713702,0.992582366405029,,0.960056208750791,0.0269846031386761 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_prevalence,99,0.42032967032967,0.408683029891007,0.430237615488184,,0.419398251813656,0.00874413998553782 +vascular_plant,vascular_plant,north,,,Galium.boreale,oob_n,100,2527,2486.7,2550.2,0,2498.26,253.599884491577 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_auc,100,0.938066230616263,0.93466745380117,0.940765655037438,0.928669885197567,0.937883495982973,0.00261554276151318 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_deviance_explained,100,0.516370072001264,0.505398206886071,0.526395342170198,0.484030970750928,0.515752167924371,0.00857907189029831 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_rmse,100,0.312758159421144,0.308636873725279,0.317184609253966,0.324741983588447,0.312516150008243,0.00345248668737259 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_spearman,100,0.735946864639038,0.730342034710404,0.740271483843431,0.719908133920423,0.735344360742431,0.00438206537637849 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_calibration_slope,100,1.13473008388671,1.12554143849423,1.14752543331478,1.13878608073771,1.13558210387584,0.00858543146862226 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_prevalence,100,0.377306878145649,0.372421470873602,0.383305291434879,0.377654931626418,0.377645635778588,0.00438562694718228 +vascular_plant,vascular_plant,north,,,Vicia.americana,insample_n,100,4351.5,4320.7,4383,6874,4375,253.690696906626 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_auc,99,0.871964519669983,0.864283107305172,0.879005006667844,,0.871629800214266,0.00629998315238523 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_deviance_explained,99,0.345314647183275,0.323859955708158,0.364870997825013,,0.343842743833649,0.0164066570145479 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_rmse,99,0.373832258803346,0.367013795603874,0.379700983106331,,0.373475639287597,0.0053233683727772 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_spearman,99,0.62435530332502,0.610277228673368,0.637680237480784,,0.624028981092336,0.0104768972182375 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_calibration_slope,99,0.959665823686938,0.92650117413497,0.991309482909245,,0.959574494451586,0.0246908964409727 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_prevalence,99,0.378367511057499,0.367908590365397,0.386595299016258,,0.377659774447659,0.00761588200173284 +vascular_plant,vascular_plant,north,,,Vicia.americana,oob_n,100,2522.5,2491,2553.3,0,2499,253.690696906626 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_auc,100,0.986704969329381,0.979533220569407,0.989594337860071,0.980256010171059,0.985523291756382,0.00408676711608706 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_deviance_explained,100,0.749634866257846,0.697474297915498,0.777014359931384,0.697836785401464,0.742884606236648,0.0299284440654052 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_rmse,100,0.194859434196921,0.183707196804742,0.216077793854085,0.215973925593421,0.197428145105221,0.0123241923503004 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_spearman,100,0.699360308765215,0.686653721494632,0.710108884225799,0.691462681901474,0.699034762364981,0.00941840192405528 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_calibration_slope,100,1.07856186814639,1.06478649972684,1.09298381781877,1.09735250260365,1.07838374038271,0.0104546439444931 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_prevalence,100,0.222355073854372,0.213781211105625,0.230552475073514,0.222054380664653,0.222167047029424,0.00682281409228088 +vascular_plant,vascular_plant,south,,,Galium.boreale,insample_n,100,1673.5,1649.8,1699,2648,1684.04,99.2542821507089 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_auc,99,0.93629736811707,0.922265824587745,0.94862767247126,,0.935466867788935,0.00953296499310888 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_deviance_explained,99,0.49791286682729,0.44322146187945,0.548663690883074,,0.496194586992175,0.0432834070478286 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_rmse,99,0.279128650636913,0.264433712557584,0.295681488183885,,0.279381936535024,0.0107258468123027 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_spearman,99,0.625285019721037,0.603938231212719,0.652713669011679,,0.626461972733005,0.0182531682869174 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_calibration_slope,99,0.928916699764072,0.882191846559735,0.973043061931934,,0.92877810888497,0.0389250381936702 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_prevalence,99,0.221428571428571,0.207598481204393,0.237028340402618,,0.221907015900446,0.0118908871510374 +vascular_plant,vascular_plant,south,,,Galium.boreale,oob_n,100,974.5,949,998.2,0,963.96,99.2542821507089 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_auc,100,0.968802636784843,0.956926936369881,0.973362114010131,0.9569840862423,0.967095049123024,0.00609559323849012 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_deviance_explained,100,0.630108997284086,0.58293145546025,0.653316166063214,0.572523255866958,0.624943754524849,0.0272660597720208 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_rmse,100,0.247714732938359,0.23857395813262,0.263267863347227,0.268895273372996,0.249626206578659,0.00995195499208994 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_spearman,100,0.713435109458004,0.697889532573135,0.725573817290587,0.698100498601086,0.712912903715989,0.0107220828355382 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_calibration_slope,100,1.13468322785417,1.11678679186851,1.15605057068114,1.1566388543954,1.13538206735364,0.015851354562755 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_prevalence,100,0.264335131120709,0.2545896459474,0.271697484166548,0.264350453172205,0.263746825699997,0.00674142412337554 +vascular_plant,vascular_plant,south,,,Vicia.americana,insample_n,100,1674,1653.9,1694.3,2648,1683.75,98.5369104816704 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_auc,99,0.877127030064345,0.862715509334491,0.892135864241849,,0.876767722891666,0.0115677071028947 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_deviance_explained,99,0.341919731518599,0.298372241457468,0.384201573064222,,0.34087480014258,0.0337341995472539 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_rmse,99,0.340577856787243,0.329862089128158,0.350602021076886,,0.340475869816327,0.00968108929086648 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_spearman,99,0.577382080456278,0.554907248023024,0.599171435505004,,0.575993602559692,0.018732275202976 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_calibration_slope,99,0.905264611303315,0.848062279269341,0.957034518134028,,0.906027766800523,0.0424924285263109 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_prevalence,99,0.26440329218107,0.251305848210322,0.281129701184139,,0.265369246565671,0.0116510729352179 +vascular_plant,vascular_plant,south,,,Vicia.americana,oob_n,100,974,953.7,994.1,0,964.25,98.5369104816704